Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G27610 Arabidopsis thaliana HOM05D005909 ORTHO05D007481 1.2e-217 759.6 390 100.0
AL5G17030 Arabidopsis lyrata HOM05D005909 ORTHO05D007481 6.5e-200 700.7 391 92.6
Carub.0005s0605 Capsella rubella HOM05D005909 ORTHO05D007481 6.7e-189 664.1 392 87.8
CARHR148990 Cardamine hirsuta HOM05D005909 ORTHO05D007481 3.7e-179 631.7 387 83.5
Sp2g12680 Schrenkiella parvula HOM05D005909 ORTHO05D007481 5.3e-178 627.9 387 81.7
BcaC06g34207 Brassica carinata HOM05D005909 ORTHO05D007481 1.2e-177 626.7 382 83.2
AL5G10170 Arabidopsis lyrata HOM05D005909 ORTHO05D007481 2.0e-177 625.9 390 81.8
CARHR143760 Cardamine hirsuta HOM05D005909 ORTHO05D007481 1.0e-176 623.6 390 80.8
C07p31670 Brassica napus HOM05D005909 ORTHO05D007481 2.9e-176 622.1 383 83.0
BolC7t43706H Brassica oleracea HOM05D005909 ORTHO05D007481 2.9e-176 622.1 383 83.0
Thhalv10000909m.g Eutrema salsugineum HOM05D005909 ORTHO05D007481 3.2e-175 618.6 387 82.9
BraA06t27329Z Brassica rapa HOM05D005909 ORTHO05D007481 7.2e-175 617.5 392 80.9
A06p44550 Brassica napus HOM05D005909 ORTHO05D007481 8.0e-174 614.0 388 81.2
AT2G01220 Arabidopsis thaliana HOM05D005909 ORTHO05D007481 5.2e-173 611.3 386 80.3
Aa31LG2G8670 Aethionema arabicum HOM05D005909 ORTHO05D007481 3.0e-165 585.5 385 78.4
THA.LOC104823950 Tarenaya hassleriana HOM05D005909 ORTHO05D007481 9.5e-159 563.9 386 73.6
GSVIVG01011843001 Vitis vinifera HOM05D005909 ORTHO05D007481 6.4e-147 524.6 380 68.4
Nn4g23953 Nelumbo nucifera HOM05D005909 ORTHO05D007481 1.2e-145 520.4 385 66.8
Lsat_1_v5_gn_3_62021 Lactuca sativa HOM05D005909 ORTHO05D007481 1.6e-145 520.0 384 67.4
QL01p010815 Quercus lobata HOM05D005909 ORTHO05D007481 2.0e-145 519.6 385 66.5
QL93p0145_0024 Quercus lobata HOM05D005909 ORTHO05D007481 2.0e-145 519.6 385 66.5
Prupe.1G316800 Prunus persica HOM05D005909 ORTHO05D007481 4.6e-145 518.5 379 67.8
CSS0033004 Camellia sinensis var. sinensis HOM05D005909 ORTHO05D007481 1.3e-144 516.9 385 66.8
Lj5g0016761 Lotus japonicus HOM05D005909 ORTHO05D007481 3.0e-144 515.8 385 65.2
Sabra10G0090400 Salix brachista HOM05D005909 ORTHO05D007481 3.0e-144 515.8 385 65.7
TWI79G1572 Tripterygium wilfordii HOM05D005909 ORTHO05D007481 3.9e-144 515.4 384 64.6
PGR119G2457 Punica granatum HOM05D005909 ORTHO05D007481 5.0e-144 515.0 385 65.5
COL.COLO4_32148 Corchorus olitorius HOM05D005909 ORTHO05D007481 1.9e-143 513.1 385 65.5
Potri.010G120200 Populus trichocarpa HOM05D005909 ORTHO05D007481 2.5e-143 512.7 387 65.9
Atru.chr11.237 Acer truncatum HOM05D005909 ORTHO05D007481 3.3e-143 512.3 385 65.7
MBI16_g44832_MAGBIO Magnolia biondii HOM05D005909 ORTHO05D007481 9.5e-143 510.8 385 66.2
TAR622G1259 Trochodendron aralioides HOM05D005909 ORTHO05D007481 9.5e-143 510.8 385 65.5
CiPaw.05G242600 Carya illinoinensis HOM05D005909 ORTHO05D007481 1.2e-142 510.4 383 65.3
Hma1.2p1_1314F.1_g274990 Hydrangea macrophylla HOM05D005909 ORTHO05D007481 2.1e-142 509.6 385 65.5
Nitab4.5_0002112g0090 Nicotiana tabacum HOM05D005909 ORTHO05D007481 2.8e-142 509.2 385 67.3
HanXRQChr15g0477421 Helianthus annuus HOM05D005909 ORTHO05D007481 4.7e-142 508.4 387 66.4
MD16G1037200 Malus domestica HOM05D005909 ORTHO05D007481 4.7e-142 508.4 385 67.0
Hma1.2p1_2306F.1_g319360 Hydrangea macrophylla HOM05D005909 ORTHO05D007481 6.2e-142 508.1 385 65.2
vmacro10599 Vaccinium macrocarpon HOM05D005909 ORTHO05D007481 6.2e-142 508.1 385 66.2
Eucgr.G02238 Eucalyptus grandis HOM05D005909 ORTHO05D007481 8.1e-142 507.7 380 65.8
Duzib248G1493 Durio zibethinus HOM05D005909 ORTHO05D007481 1.1e-141 507.3 393 65.1
ECA246G0525 Erigeron canadensis HOM05D005909 ORTHO05D007481 1.1e-141 507.3 382 66.8
Gohir.D02G171900 Gossypium hirsutum HOM05D005909 ORTHO05D007481 1.1e-141 507.3 387 65.6
Actinidia14921 Actinidia chinensis HOM05D005909 ORTHO05D007481 1.8e-141 506.5 385 66.2
FvH4_4g26720 Fragaria vesca HOM05D005909 ORTHO05D007481 3.1e-141 505.8 377 66.0
RcHm_v2.0_Chr4g0434411 Rosa chinensis HOM05D005909 ORTHO05D007481 5.2e-141 505.0 382 65.4
Ciclev10015519m.g Citrus clementina HOM05D005909 ORTHO05D007481 6.8e-141 504.6 385 64.2
Gorai.005G193400 Gossypium raimondii HOM05D005909 ORTHO05D007481 2.0e-140 503.1 393 64.6
TPR.G4906 Trifolium pratense HOM05D005909 ORTHO05D007481 2.0e-140 503.1 385 64.9
Nitab4.5_0000694g0120 Nicotiana tabacum HOM05D005909 ORTHO05D007481 2.6e-140 502.7 385 66.5
Rhsim09G0103900 Rhododendron simsii HOM05D005909 ORTHO05D007481 2.6e-140 502.7 401 63.3
Gohir.A03G148900 Gossypium hirsutum HOM05D005909 ORTHO05D007481 5.8e-140 501.5 394 65.0
CAN.G610.24 Capsicum annuum HOM05D005909 ORTHO05D007481 3.7e-139 498.8 385 65.5
Ca_06889_v3 Cicer arietinum L. HOM05D005909 ORTHO05D007481 3.7e-139 498.8 385 63.9
Aqoxy3G04056 Aquilegia oxysepala HOM05D005909 ORTHO05D007481 6.4e-139 498.0 385 63.9
Medtr1g109590 Medicago truncatula HOM05D005909 ORTHO05D007481 6.4e-139 498.0 385 63.6
PSO782G5715 Papaver somniferum HOM05D005909 ORTHO05D007481 6.4e-139 498.0 383 65.3
Glyma.20G120600 Glycine max HOM05D005909 ORTHO05D007481 1.1e-138 497.3 385 63.1
Lalb_Chr21g0308731 Lupinus albus HOM05D005909 ORTHO05D007481 1.1e-138 497.3 383 64.2
Solyc05g008870.3 Solanum lycopersicum HOM05D005909 ORTHO05D007481 1.4e-138 496.9 385 66.0
Sopen05g004630 Solanum pennellii HOM05D005909 ORTHO05D007481 1.4e-138 496.9 385 66.0
arahy.Tifrunner.gnm1.ann1.IU6D7D Arachis hypogaea HOM05D005909 ORTHO05D007481 2.4e-138 496.1 384 65.1
Phvul.007G032000 Phaseolus vulgaris HOM05D005909 ORTHO05D007481 5.4e-138 495.0 385 64.4
DCAR_007264 Daucus carota HOM05D005909 ORTHO05D007481 7.1e-138 494.6 380 65.0
VMungo0720G1068 Vigna mungo HOM05D005909 ORTHO05D007481 1.2e-137 493.8 381 64.0
arahy.Tifrunner.gnm1.ann1.W577BF Arachis hypogaea HOM05D005909 ORTHO05D007481 2.1e-137 493.0 380 64.7
CDE08G1136 Ceratophyllum demersum HOM05D005909 ORTHO05D007481 2.1e-137 493.0 384 63.5
Psat6g224680 Pisum sativum HOM05D005909 ORTHO05D007481 1.7e-136 490.0 385 63.6
Cfa015837 Carpinus fangiana HOM05D005909 ORTHO05D007481 3.0e-136 489.2 385 63.6
Cc11_g09670 Coffea canephora HOM05D005909 ORTHO05D007481 1.5e-135 486.9 385 63.4
SalBow8G3248 Salvia bowleyana HOM05D005909 ORTHO05D007481 1.5e-135 486.9 383 63.2
CsaV3_5G028790 Cucumis sativus L. HOM05D005909 ORTHO05D007481 9.5e-135 484.2 385 61.6
Hund20744 Selenicereus undatus HOM05D005909 ORTHO05D007481 1.6e-134 483.4 377 61.8
AUR62037268 Chenopodium quinoa HOM05D005909 ORTHO05D007481 3.6e-134 482.3 384 61.2
MSTRG.13555 Avicennia marina HOM05D005909 ORTHO05D007481 6.2e-134 481.5 385 62.9
Sed0017467 Sechium edule HOM05D005909 ORTHO05D007481 2.3e-133 479.6 385 61.0
Sc14g0007280 Simmondsia chinensis HOM05D005909 ORTHO05D007481 2.3e-133 479.6 386 62.2
SalBow8G0352 Salvia bowleyana HOM05D005909 ORTHO05D007481 1.2e-132 477.2 390 61.8
AUR62002812 Chenopodium quinoa HOM05D005909 ORTHO05D007481 2.6e-132 476.1 384 60.7
MELO3C005340.2 Cucumis melo HOM05D005909 ORTHO05D007481 2.6e-132 476.1 385 60.5
Lj6A753G52 Lonicera japonica HOM05D005909 ORTHO05D007481 7.6e-132 474.6 385 62.1
ATR0807G244 Amborella trichopoda HOM05D005909 ORTHO05D007481 1.3e-131 473.8 383 61.1
HPP92_024514 Vanilla planifolia HOM05D005909 ORTHO05D007481 4.9e-131 471.9 380 62.4
EL10Ac6g14305 Beta vulgaris HOM05D005909 ORTHO05D007481 4.1e-130 468.8 384 58.6
PSO063G1187 Papaver somniferum HOM05D005909 ORTHO05D007481 1.1e-127 460.7 348 67.0
Cpa.g.sc65.66 Carica papaya HOM05D005909 ORTHO05D007481 1.9e-127 459.9 385 61.0
Haze_00654 Corylus avellana HOM05D005909 ORTHO05D007481 1.9e-127 459.9 516 49.4
Zm00001eb360650 Zea mays HOM05D005909 ORTHO05D007481 1.9e-127 459.9 383 60.8
Dinv16136 Davidia involucrata HOM05D005909 ORTHO05D007481 5.6e-127 458.4 384 61.5
unitig_699.g19483 Utricularia gibba HOM05D005909 ORTHO05D007481 8.4e-123 444.5 383 60.8
Migut.E00369 Erythranthe guttata HOM05D005909 ORTHO05D007481 1.1e-122 444.1 426 55.6
Ah.03g138370 Amaranthus hybridus HOM05D005909 ORTHO05D007481 1.6e-121 440.3 356 61.0
Peaxi162Scf00179g00534 Petunia axillaris HOM05D005909 ORTHO05D007481 3.9e-120 435.6 385 59.5
Carub.0005s0021 Capsella rubella HOM05D005909 ORTHO05D007481 4.4e-116 422.2 271 78.6
Manes.06G064900 Manihot esculenta HOM05D005909 ORTHO05D007481 9.9e-116 421.0 309 66.3
Thecc.02G222000 Theobroma cacao HOM05D005909 ORTHO05D007481 3.8e-115 419.1 311 68.2
ClCG01G005900 Citrullus lanatus HOM05D005909 ORTHO05D007481 4.9e-115 418.7 385 56.6
FAN07G1481 Fragaria x ananassa HOM05D005909 ORTHO05D007481 6.4e-115 418.3 352 60.5
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 1.3e-110 404.1 380 53.9
Mapoly0100s0051 Marchantia polymorpha HOM05D005909 ORTHO05D007481 1.1e-109 401.0 381 54.1
SMO196G0003 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 2.1e-105 386.7 400 50.5
Pp3c3_16750 Physcomitrium patens HOM05D005909 ORTHO05D007481 4.6e-105 385.6 387 51.4
Pp3c12_7340 Physcomitrium patens HOM05D005909 ORTHO05D007481 7.9e-105 384.8 380 52.4
FAN12G0127 Fragaria x ananassa HOM05D005909 ORTHO05D007481 8.7e-104 381.3 291 64.9
FAN22G0620 Fragaria x ananassa HOM05D005909 ORTHO05D007481 1.5e-100 370.5 291 63.2
Oeu027686.1 Olea europaea HOM05D005909 ORTHO05D007481 1.5e-100 370.5 391 52.2
Actinidia16683 Actinidia chinensis HOM05D005909 ORTHO05D007481 2.2e-99 366.7 313 62.3
FAN12G0185 Fragaria x ananassa HOM05D005909 ORTHO05D007481 3.5e-97 359.4 307 59.9
Dinv31596 Davidia involucrata HOM05D005909 ORTHO05D007481 3.7e-94 349.4 331 56.2
Carub.0005s0593 Capsella rubella HOM05D005909 ORTHO05D007481 4.1e-93 345.9 240 76.7
CANSAT01G0643 Cannabis sativa HOM05D005909 ORTHO05D007481 1.0e-88 331.3 265 61.1
Os01g0691500 Oryza sativa ssp. japonica HOM05D005909 ORTHO05D007481 2.4e-85 320.1 270 61.1
TAR622G0977 Trochodendron aralioides HOM05D005909 ORTHO05D007481 2.2e-83 313.5 233 67.0
FAN17G2694 Fragaria x ananassa HOM05D005909 ORTHO05D007481 3.8e-83 312.8 382 47.6
SGA_v2.0_scaffold14G06904 Striga asiatica HOM05D005909 ORTHO05D007481 3.4e-76 289.7 230 64.8
MCO06G004 Micromonas commoda HOM05D005909 ORTHO05D007481 9.4e-58 228.4 394 35.3
Cre06.g278116 Chlamydomonas reinhardtii HOM05D005909 ORTHO05D007481 7.5e-55 218.8 433 34.9
PGSC0003DMG401030529 Solanum tuberosum HOM05D005909 ORTHO05D007481 7.7e-52 208.8 153 69.3
PRCOL_00006609 Prasinoderma coloniale HOM05D005909 ORTHO05D007481 1.3e-51 208.0 431 33.9
SGA_v2.0_scaffold14G06901 Striga asiatica HOM05D005909 ORTHO05D007481 1.1e-50 204.9 142 67.6
SEGI_08541 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 4.1e-45 186.4 152 59.2
Oeu027687.1 Olea europaea HOM05D005909 ORTHO05D007481 3.0e-40 170.2 115 73.0
SEGI_29486 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 1.8e-32 144.4 107 61.7
CBR_g39317 Chara braunii HOM05D005909 ORTHO05D007481 1.1e-29 135.2 184 42.4
BcaC06g31323 Brassica carinata HOM05D005909 ORTHO05D007481 2.0e-23 114.4 68 85.3
SMO265G0018 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 2.7e-20 104.0 154 38.3
SMO163G0092 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 3.0e-19 100.5 149 38.3
CiPaw.05G241800 Carya illinoinensis HOM05D005909 ORTHO05D007481 6.8e-16 89.4 64 65.6
arahy.Tifrunner.gnm1.ann1.XNS652 Arachis hypogaea HOM05D005909 ORTHO05D007481 4.4e-15 86.7 146 37.7
SMO146G0235 Selaginella moellendorffii HOM05D020292 ORTHO05D030583 6.0e-12 76.3 111 37.8
CBR_g39316 Chara braunii HOM05D000019 ORTHO05D000002 2.5e-10 70.9 70 47.1
SEGI_32432 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 4.3e-10 70.1 68 52.9
TPR.G28941 Trifolium pratense HOM05D000324 ORTHO05D004875 1.6e-09 68.2 114 39.5
Gohir.D12G121400 Gossypium hirsutum HOM05D005909 ORTHO05D046826 2.8e-09 67.4 35 82.9
SMO199G0001 Selaginella moellendorffii HOM05D006925 ORTHO05D008830 1.2e-07 62.0 88 36.4
Gorai.008G132300 Gossypium raimondii HOM05D005909 ORTHO05D046826 2.6e-07 60.8 34 76.5


User provided reference genes

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