Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G27420 Arabidopsis thaliana HOM05D006554 ORTHO05D008778 3.0e-134 481.9 245 100.0
AL5G16780 Arabidopsis lyrata HOM05D006554 ORTHO05D008778 6.9e-115 417.5 243 87.2
Carub.0005s0577 Capsella rubella HOM05D006554 ORTHO05D008778 4.2e-104 381.7 244 80.7
Sp2g16620 Schrenkiella parvula HOM05D006554 ORTHO05D008778 7.7e-82 307.8 241 69.7
Thhalv10004828m.g Eutrema salsugineum HOM05D006554 ORTHO05D008778 1.1e-80 303.9 245 68.2
CARHR148770 Cardamine hirsuta HOM05D006554 ORTHO05D008778 2.9e-73 279.3 240 63.3
C02p54190 Brassica napus HOM05D006554 ORTHO05D008778 3.2e-64 249.2 238 58.0
BolC2t11482H Brassica oleracea HOM05D006554 ORTHO05D008778 9.4e-64 247.7 238 58.4
BcaC03g17463 Brassica carinata HOM05D006554 ORTHO05D017433 1.2e-63 247.3 238 57.6
A02p35470 Brassica napus HOM05D006554 ORTHO05D017433 2.0e-61 240.0 238 58.4
BraA02t08548Z Brassica rapa HOM05D006554 ORTHO05D017433 7.5e-61 238.0 238 57.6
Sp7g01270 Schrenkiella parvula HOM05D006554 ORTHO05D008778 4.1e-59 232.3 240 52.9
Carub.0007s3489 Capsella rubella HOM05D006554 ORTHO05D008778 2.7e-58 229.6 245 51.8
AT5G40600 Arabidopsis thaliana HOM05D006554 ORTHO05D008778 7.7e-58 228.0 245 51.4
AL7G49210 Arabidopsis lyrata HOM05D006554 ORTHO05D008778 3.2e-56 222.6 235 50.2
A04p13620 Brassica napus HOM05D004424 ORTHO05D005476 1.2e-55 220.7 240 51.7
BraA04t17023Z Brassica rapa HOM05D004424 ORTHO05D005476 1.2e-55 220.7 240 51.7
BolC4t26342H Brassica oleracea HOM05D006554 ORTHO05D008778 4.7e-55 218.8 240 50.8
C04p47410 Brassica napus HOM05D004424 ORTHO05D005476 1.0e-54 217.6 240 50.8
BolC4t27196H Brassica oleracea HOM05D006554 ORTHO05D008778 8.6e-49 198.0 236 47.0
CARHR261360 Cardamine hirsuta HOM05D006554 ORTHO05D008778 2.5e-48 196.4 244 46.7
Thhalv10027933m.g Eutrema salsugineum HOM05D006554 ORTHO05D008778 1.6e-47 193.7 240 45.0
Aa31LG9G1020 Aethionema arabicum HOM05D006554 ORTHO05D008778 6.4e-44 181.8 241 45.6
BcaB06g27536 Brassica carinata HOM05D006554 ORTHO05D008778 1.9e-35 153.7 154 52.6
BcaB07g30158 Brassica carinata HOM05D006554 ORTHO05D008778 3.2e-35 152.9 117 65.0
TPR.G1120 Trifolium pratense HOM05D006554 ORTHO05D008778 3.5e-26 122.9 285 34.7
Duzib147G0564 Durio zibethinus HOM05D006554 ORTHO05D008778 1.3e-25 120.9 279 32.3
Manes.15G153200 Manihot esculenta HOM05D006554 ORTHO05D008778 1.3e-25 120.9 309 31.1
Phvul.008G147100 Phaseolus vulgaris HOM05D006554 ORTHO05D008778 1.3e-25 120.9 283 32.5
Lalb_Chr22g0360641 Lupinus albus HOM05D006554 ORTHO05D008778 5.1e-25 119.0 267 32.2
Glyma.19G079100 Glycine max HOM05D006554 ORTHO05D008778 6.6e-25 118.6 283 33.6
ClCG05G012880 Citrullus lanatus HOM05D006554 ORTHO05D008778 1.1e-24 117.9 252 32.9
RcHm_v2.0_Chr2g0173581 Rosa chinensis HOM05D006554 ORTHO05D008778 1.5e-24 117.5 297 33.0
SGA_v2.0_scaffold135G34926 Striga asiatica HOM05D006554 ORTHO05D008778 1.5e-24 117.5 267 33.3
Gohir.D04G059400 Gossypium hirsutum HOM05D006554 ORTHO05D008778 1.9e-24 117.1 282 34.4
Gorai.012G066100 Gossypium raimondii HOM05D006554 ORTHO05D008778 1.9e-24 117.1 282 34.4
Medtr7g032890 Medicago truncatula HOM05D006554 ORTHO05D008778 1.9e-24 117.1 296 33.1
QL02p073734 Quercus lobata HOM05D006554 ORTHO05D008778 1.9e-24 117.1 206 33.5
MELO3C014791.2 Cucumis melo HOM05D006554 ORTHO05D008778 5.6e-24 115.5 249 33.3
Ciclev10015858m.g Citrus clementina HOM05D006554 ORTHO05D008778 7.3e-24 115.2 147 43.5
Prupe.3G295900 Prunus persica HOM05D006554 ORTHO05D008778 7.3e-24 115.2 314 32.2
Gohir.A05G353700 Gossypium hirsutum HOM05D006554 ORTHO05D008778 9.5e-24 114.8 282 33.0
Ah.03g136830 Amaranthus hybridus HOM05D003292 ORTHO05D004237 1.6e-23 114.0 265 31.3
CsaV3_3G027590 Cucumis sativus L. HOM05D006554 ORTHO05D008778 1.6e-23 114.0 249 32.9
FvH4_6g52060 Fragaria vesca HOM05D006554 ORTHO05D008778 1.6e-23 114.0 247 35.2
MD09G1020300 Malus domestica HOM05D006554 ORTHO05D008778 2.1e-23 113.6 312 30.4
Cfa007322 Carpinus fangiana HOM05D006554 ORTHO05D008778 4.7e-23 112.5 270 32.6
Glyma.16G067800 Glycine max HOM05D006554 ORTHO05D008778 8.1e-23 111.7 283 31.4
Lj1g0005465 Lotus japonicus HOM05D006554 ORTHO05D008778 8.1e-23 111.7 265 32.5
PGR083G2647 Punica granatum HOM05D006554 ORTHO05D008778 1.1e-22 111.3 246 33.7
Potri.003G101100 Populus trichocarpa HOM05D006554 ORTHO05D008778 1.4e-22 110.9 258 31.8
Hma1.2p1_0279F.1_g111960 Hydrangea macrophylla HOM05D006554 ORTHO05D008778 1.8e-22 110.5 220 37.3
Haze_14775 Corylus avellana HOM05D006554 ORTHO05D008778 3.1e-22 109.8 270 33.7
FAN09G2431 Fragaria x ananassa HOM05D006554 ORTHO05D008778 1.2e-21 107.8 255 33.3
FAN14G0519 Fragaria x ananassa HOM05D006554 ORTHO05D008778 1.2e-21 107.8 262 31.7
MSTRG.3126 Avicennia marina HOM05D006554 ORTHO05D008778 4.4e-21 105.9 287 32.1
Sed0003688 Sechium edule HOM05D006554 ORTHO05D008778 3.8e-20 102.8 252 31.7
arahy.Tifrunner.gnm1.ann1.1L0SFZ Arachis hypogaea HOM05D006554 ORTHO05D008778 6.4e-20 102.1 320 28.8
Sabra03G0068900 Salix brachista HOM05D006554 ORTHO05D008778 1.1e-19 101.3 136 39.7
TAR629G0722 Trochodendron aralioides HOM05D006554 ORTHO05D008778 1.4e-19 100.9 126 40.5
GSVIVG01032362001 Vitis vinifera HOM05D006554 ORTHO05D008778 1.4e-19 100.9 126 41.3
unitig_52.g17657 Utricularia gibba HOM05D006554 ORTHO05D008778 1.9e-19 100.5 230 33.5
FAN02G3632 Fragaria x ananassa HOM05D006554 ORTHO05D008778 3.2e-19 99.8 254 33.1
FAN05G3817 Fragaria x ananassa HOM05D006554 ORTHO05D008778 5.4e-19 99.0 261 31.4
CiPaw.04G030700 Carya illinoinensis HOM05D006554 ORTHO05D008778 7.1e-19 98.6 273 30.8
Dinv33413 Davidia involucrata HOM05D006554 ORTHO05D008778 2.1e-18 97.1 139 38.8
Migut.H00036 Erythranthe guttata HOM05D006554 ORTHO05D008778 3.5e-18 96.3 116 41.4
Cc07_g00120 Coffea canephora HOM05D006554 ORTHO05D008778 4.6e-18 95.9 200 31.0
Atru.chr6.2449 Acer truncatum HOM05D006554 ORTHO05D008778 6.0e-18 95.5 102 47.1
SalBow1G4569 Salvia bowleyana HOM05D006554 ORTHO05D008778 7.8e-18 95.1 264 30.3
EL10Ac5g11640 Beta vulgaris HOM05D006554 ORTHO05D008778 1.7e-17 94.0 117 43.6
FAN14G5462 Fragaria x ananassa HOM05D006554 ORTHO05D008778 1.7e-17 94.0 313 27.2
vmacro05891 Vaccinium macrocarpon HOM05D006554 ORTHO05D008778 2.3e-17 93.6 301 30.6
CANSAT64G1839 Cannabis sativa HOM05D006554 ORTHO05D008778 3.0e-17 93.2 312 29.2
Nitab4.5_0000040g0640 Nicotiana tabacum HOM05D006554 ORTHO05D008778 3.0e-17 93.2 210 31.0
Peaxi162Scf00080g01410 Petunia axillaris HOM05D006554 ORTHO05D008778 1.1e-16 91.3 165 34.5
AUR62028440 Chenopodium quinoa HOM05D006554 ORTHO05D008778 1.5e-16 90.9 117 41.0
RhsimUnG0087800 Rhododendron simsii HOM05D006554 ORTHO05D008778 1.5e-16 90.9 270 32.6
Prupe.3G207500 Prunus persica HOM05D006554 ORTHO05D008778 1.9e-16 90.5 291 30.2
Nn4g22538 Nelumbo nucifera HOM05D006554 ORTHO05D008778 2.5e-16 90.1 219 30.1
Aqoxy5G03668 Aquilegia oxysepala HOM05D006554 ORTHO05D008778 4.3e-16 89.4 117 36.8
Thecc.04G022100 Theobroma cacao HOM05D006554 ORTHO05D008778 5.6e-16 89.0 120 39.2
RhsimUnG0005800 Rhododendron simsii HOM05D006554 ORTHO05D008778 9.6e-16 88.2 270 32.2
ATR0199G021 Amborella trichopoda HOM05D006554 ORTHO05D008778 1.2e-15 87.8 214 33.6
BcaC06g30992 Brassica carinata HOM05D000131 ORTHO05D008778 1.2e-15 87.8 77 63.6
Nitab4.5_0004496g0080 Nicotiana tabacum HOM05D006554 ORTHO05D008778 2.8e-15 86.7 214 29.9
Eucgr.J02264 Eucalyptus grandis HOM05D006554 ORTHO05D008778 2.4e-14 83.6 117 41.0
SHI53794 Sapria himalayana HOM05D006554 ORTHO05D008778 2.4e-14 83.6 163 31.3
Sopen02g017020 Solanum pennellii HOM05D006554 ORTHO05D008778 2.4e-14 83.6 213 29.6
CSS0050446 Camellia sinensis var. sinensis HOM05D006554 ORTHO05D008778 4.0e-14 82.8 155 34.8
Solyc02g067900.3 Solanum lycopersicum HOM05D006554 ORTHO05D008778 5.2e-14 82.4 164 32.3
PGSC0003DMG400006964 Solanum tuberosum HOM05D006554 ORTHO05D008778 5.2e-14 82.4 135 36.3
ECA246G2886 Erigeron canadensis HOM05D006554 ORTHO05D008778 6.9e-14 82.0 129 37.2
Lsat_1_v5_gn_0_6020 Lactuca sativa HOM05D006554 ORTHO05D008778 9.0e-14 81.6 179 33.0
Hund23035 Selenicereus undatus HOM05D006554 ORTHO05D008778 9.0e-14 81.6 273 28.6
Actinidia05967 Actinidia chinensis HOM05D006554 ORTHO05D008778 9.9e-13 78.2 317 27.8
HPP92_003738 Vanilla planifolia HOM05D006554 ORTHO05D008778 1.3e-12 77.8 140 35.7
VMungo1383G1633 Vigna mungo HOM05D006554 ORTHO05D008778 2.2e-12 77.0 103 40.8
PSO675G3751 Papaver somniferum HOM05D006554 ORTHO05D008778 5.4e-11 72.4 147 31.3
Oeu050455.2 Olea europaea HOM05D006554 ORTHO05D008778 7.1e-11 72.0 162 32.7
PSO541G1758 Papaver somniferum HOM05D006554 ORTHO05D008778 1.2e-10 71.2 147 31.3
CDE09G0234 Ceratophyllum demersum HOM05D006554 ORTHO05D008778 6.0e-10 68.9 92 40.2
CDE02G2727 Ceratophyllum demersum HOM05D003393 ORTHO05D003916 2.3e-09 67.0 116 32.8
CSS0049853 Camellia sinensis var. sinensis HOM05D006554 ORTHO05D008778 8.7e-09 65.1 69 46.4
Psat7g108920 Pisum sativum HOM05D006554 ORTHO05D008778 1.9e-08 63.9 214 33.2
SEGI_16878 Sequoiadendron giganteum HOM05D000336 ORTHO05D002705 9.6e-08 61.6 103 35.0
Cpa.g.sc130.63 Carica papaya HOM05D006554 ORTHO05D008778 3.1e-06 56.6 131 30.5
BcaNung00174 Brassica carinata HOM05D000169 ORTHO05D091542 4.0e-06 56.2 76 42.1


User provided reference genes

Program Settings