Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G26780 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 3.7e-219 764.6 400 100.0
Carub.0005s0483 Capsella rubella HOM05D005312 ORTHO05D006459 6.4e-203 710.7 402 93.5
AL5G15650 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 1.5e-199 699.5 400 91.2
Thhalv10004350m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 2.5e-191 672.2 402 87.3
Sp2g15910 Schrenkiella parvula HOM05D005312 ORTHO05D006459 2.5e-191 672.2 404 88.9
BraA02t08484Z Brassica rapa HOM05D005312 ORTHO05D006459 2.5e-186 655.6 405 86.7
A02p34780 Brassica napus HOM05D005312 ORTHO05D006459 1.6e-185 652.9 404 86.4
C02p53340 Brassica napus HOM05D005312 ORTHO05D006459 1.6e-185 652.9 402 86.8
BcaC03g17388 Brassica carinata HOM05D005312 ORTHO05D006459 2.1e-185 652.5 402 86.8
BolC2t11405H Brassica oleracea HOM05D005312 ORTHO05D006459 2.1e-185 652.5 402 86.8
BcaB07g30210 Brassica carinata HOM05D005312 ORTHO05D006459 1.0e-179 633.6 411 83.9
CARHR147850 Cardamine hirsuta HOM05D005312 ORTHO05D006459 1.7e-171 606.3 409 82.2
Aa31LG2G5770 Aethionema arabicum HOM05D005312 ORTHO05D006459 8.5e-171 604.0 390 80.0
Aa31LG1G1910 Aethionema arabicum HOM05D005312 ORTHO05D006459 1.5e-159 566.6 416 75.2
THA.LOC104805304 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 1.4e-157 560.1 421 75.8
THA.LOC104823996 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 1.6e-153 546.6 400 72.5
AL1G24500 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 3.0e-152 542.3 414 73.2
Atru.chr6.2642 Acer truncatum HOM05D005312 ORTHO05D006459 3.3e-151 538.9 423 71.2
AT1G12850 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 1.7e-150 536.6 376 74.7
CARHR013180 Cardamine hirsuta HOM05D005312 ORTHO05D006459 7.0e-149 531.2 415 72.3
Ciclev10015374m.g Citrus clementina HOM05D005312 ORTHO05D006459 2.6e-148 529.3 425 69.2
Carub.0001s1260 Capsella rubella HOM05D005312 ORTHO05D006459 2.2e-147 526.2 407 70.8
Dinv33289 Davidia involucrata HOM05D005312 ORTHO05D006459 1.1e-146 523.9 423 69.5
Sp1g11430 Schrenkiella parvula HOM05D005312 ORTHO05D006459 5.5e-146 521.5 411 71.8
Thhalv10007881m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 1.3e-142 510.4 409 71.6
A08p32570 Brassica napus HOM05D005312 ORTHO05D006459 7.0e-141 504.6 408 69.1
Cpa.g.sc70.78 Carica papaya HOM05D005312 ORTHO05D006459 7.0e-141 504.6 432 66.7
Hma1.2p1_0868F.1_g230570 Hydrangea macrophylla HOM05D005312 ORTHO05D006459 7.7e-140 501.1 424 65.1
Thecc.04G046000 Theobroma cacao HOM05D005312 ORTHO05D006459 1.3e-139 500.4 395 66.8
COL.COLO4_13349 Corchorus olitorius HOM05D005312 ORTHO05D006459 1.7e-139 500.0 395 66.8
Manes.11G077500 Manihot esculenta HOM05D005312 ORTHO05D006459 1.7e-139 500.0 424 68.2
C08p15720 Brassica napus HOM05D005312 ORTHO05D006459 2.9e-139 499.2 407 71.5
Peaxi162Scf00420g00087 Petunia axillaris HOM05D005312 ORTHO05D006459 3.8e-139 498.8 387 66.7
BolC8t49199H Brassica oleracea HOM05D005312 ORTHO05D006459 2.5e-138 496.1 407 70.8
QL02p069878 Quercus lobata HOM05D005312 ORTHO05D006459 3.2e-138 495.7 390 67.9
BraA08t35181Z Brassica rapa HOM05D005312 ORTHO05D006459 5.5e-138 495.0 406 69.2
CAN.G473.156 Capsicum annuum HOM05D005312 ORTHO05D006459 1.2e-137 493.8 385 65.7
Sopen02g039150 Solanum pennellii HOM05D005312 ORTHO05D006459 1.2e-137 493.8 381 66.4
BcaB03g13161 Brassica carinata HOM05D005312 ORTHO05D006459 1.6e-137 493.4 415 70.4
Solyc02g094480.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 1.6e-137 493.4 380 66.3
Duzib264G0870 Durio zibethinus HOM05D005312 ORTHO05D006459 2.1e-137 493.0 397 66.2
TWI32G0425 Tripterygium wilfordii HOM05D005312 ORTHO05D006459 2.1e-137 493.0 391 67.5
MD17G1007700 Malus domestica HOM05D005312 ORTHO05D006459 2.7e-137 492.7 429 66.0
Prupe.3G312600 Prunus persica HOM05D005312 ORTHO05D006459 2.7e-137 492.7 394 67.3
Migut.F00017 Erythranthe guttata HOM05D005312 ORTHO05D006459 8.0e-137 491.1 426 66.2
PGSC0003DMG400020194 Solanum tuberosum HOM05D005312 ORTHO05D006459 1.4e-136 490.3 385 65.5
CSS0036880 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 3.0e-136 489.2 388 65.5
Cfa007172 Carpinus fangiana HOM05D005312 ORTHO05D006459 5.2e-136 488.4 396 64.9
Manes.04G092300 Manihot esculenta HOM05D005312 ORTHO05D006459 1.5e-135 486.9 388 66.2
Sabra14G0109800 Salix brachista HOM05D005312 ORTHO05D006459 2.6e-135 486.1 376 66.5
Actinidia37728 Actinidia chinensis HOM05D005312 ORTHO05D006459 7.5e-135 484.6 424 65.1
MD09G1004000 Malus domestica HOM05D005312 ORTHO05D006459 7.5e-135 484.6 401 65.3
Potri.002G236600 Populus trichocarpa HOM05D005312 ORTHO05D006459 9.8e-135 484.2 373 67.0
Potri.014G145900 Populus trichocarpa HOM05D005312 ORTHO05D006459 9.8e-135 484.2 384 65.9
Duzib187G0698 Durio zibethinus HOM05D005312 ORTHO05D006459 1.3e-134 483.8 426 64.3
Glyma.02G066000 Glycine max HOM05D005312 ORTHO05D006459 1.7e-134 483.4 423 65.7
Sabra02G0180200 Salix brachista HOM05D005312 ORTHO05D006459 2.8e-134 482.6 384 65.4
Cc07_g01210 Coffea canephora HOM05D005312 ORTHO05D006459 6.3e-134 481.5 389 65.6
RcHm_v2.0_Chr2g0176401 Rosa chinensis HOM05D005312 ORTHO05D006459 1.1e-133 480.7 385 66.5
MSTRG.3045 Avicennia marina HOM05D005312 ORTHO05D006459 2.4e-133 479.6 431 63.1
SalBow4G2016 Salvia bowleyana HOM05D005312 ORTHO05D006459 5.4e-133 478.4 389 63.8
CANSAT64G1152 Cannabis sativa HOM05D005312 ORTHO05D006459 1.6e-132 476.9 397 63.5
Duzib147G0684 Durio zibethinus HOM05D005312 ORTHO05D006459 2.0e-132 476.5 396 63.6
Glyma.16G146900 Glycine max HOM05D005312 ORTHO05D006459 2.0e-132 476.5 391 65.7
Gohir.D07G239300 Gossypium hirsutum HOM05D005312 ORTHO05D006459 2.7e-132 476.1 397 64.2
Gorai.001G275400 Gossypium raimondii HOM05D005312 ORTHO05D006459 2.7e-132 476.1 397 64.2
Phvul.004G070300 Phaseolus vulgaris HOM05D005312 ORTHO05D006459 4.5e-132 475.3 391 64.7
Gohir.A07G232100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 5.9e-132 474.9 397 64.0
Sed0007531 Sechium edule HOM05D005312 ORTHO05D006459 1.0e-131 474.2 384 66.7
FAN05G1132 Fragaria x ananassa HOM05D005312 ORTHO05D006459 2.3e-131 473.0 385 65.7
Lj2g0017210 Lotus japonicus HOM05D005312 ORTHO05D006459 2.9e-131 472.6 397 64.5
CiPaw.03G003000 Carya illinoinensis HOM05D005312 ORTHO05D006459 3.8e-131 472.2 396 63.9
FvH4_6g54210 Fragaria vesca HOM05D005312 ORTHO05D006459 3.8e-131 472.2 385 65.5
FAN09G1737 Fragaria x ananassa HOM05D005312 ORTHO05D006459 3.8e-131 472.2 385 65.5
Lalb_Chr06g0173771 Lupinus albus HOM05D005312 ORTHO05D006459 5.0e-131 471.9 391 63.7
FAN14G0182 Fragaria x ananassa HOM05D005312 ORTHO05D006459 8.6e-131 471.1 385 65.2
vmacro22240 Vaccinium macrocarpon HOM05D005312 ORTHO05D006459 1.9e-130 469.9 389 64.8
Lj7A616T62 Lonicera japonica HOM05D005312 ORTHO05D006459 3.3e-130 469.2 383 64.0
TAR629G1483 Trochodendron aralioides HOM05D005312 ORTHO05D006459 3.3e-130 469.2 422 64.0
Psat1g097480 Pisum sativum HOM05D005312 ORTHO05D006459 4.3e-130 468.8 398 64.1
Rhsim10G0001700 Rhododendron simsii HOM05D005312 ORTHO05D006459 1.2e-129 467.2 388 63.9
Eucgr.G01940 Eucalyptus grandis HOM05D005312 ORTHO05D006459 1.6e-129 466.8 433 64.0
Oeu039797.1 Olea europaea HOM05D005312 ORTHO05D006459 1.6e-129 466.8 429 61.8
TAR371G0255 Trochodendron aralioides HOM05D005312 ORTHO05D006459 6.1e-129 464.9 428 61.0
DCAR_002973 Daucus carota HOM05D005312 ORTHO05D006459 1.8e-128 463.4 403 62.3
ClCG05G012720 Citrullus lanatus HOM05D005312 ORTHO05D006459 8.9e-128 461.1 386 64.0
FAN02G3987 Fragaria x ananassa HOM05D005312 ORTHO05D006459 8.9e-128 461.1 385 64.4
PGR083G1093 Punica granatum HOM05D005312 ORTHO05D006459 1.7e-126 456.8 375 64.8
TPR.G36663 Trifolium pratense HOM05D005312 ORTHO05D006459 4.9e-126 455.3 393 62.6
Lalb_Chr02g0156821 Lupinus albus HOM05D005312 ORTHO05D006459 6.4e-126 454.9 390 62.8
Ah.02g128920 Amaranthus hybridus HOM05D005312 ORTHO05D006459 1.1e-125 454.1 431 59.9
SGA_v2.0_scaffold44G16946 Striga asiatica HOM05D005312 ORTHO05D006459 1.8e-125 453.4 380 62.4
EL10As7g23753 Beta vulgaris HOM05D005312 ORTHO05D006459 4.1e-125 452.2 396 61.1
Sc03g0004830 Simmondsia chinensis HOM05D005312 ORTHO05D006459 1.2e-124 450.7 376 63.6
MELO3C014806.2 Cucumis melo HOM05D005312 ORTHO05D006459 2.7e-124 449.5 386 62.7
Nn4g22171 Nelumbo nucifera HOM05D005312 ORTHO05D006459 5.9e-124 448.4 421 59.9
arahy.Tifrunner.gnm1.ann1.ZY683S Arachis hypogaea HOM05D005312 ORTHO05D006459 1.7e-123 446.8 403 60.5
Medtr6g033275 Medicago truncatula HOM05D005312 ORTHO05D006459 3.9e-123 445.7 394 61.2
HanXRQChr14g0451381 Helianthus annuus HOM05D005312 ORTHO05D006459 7.3e-122 441.4 362 62.7
arahy.Tifrunner.gnm1.ann1.JN3C7K Arachis hypogaea HOM05D005312 ORTHO05D006459 2.1e-121 439.9 407 59.5
Nitab4.5_0025697g0010 Nicotiana tabacum HOM05D005312 ORTHO05D006459 1.4e-120 437.2 357 63.9
Oeu003422.1 Olea europaea HOM05D005312 ORTHO05D006459 1.8e-120 436.8 427 58.5
Lsat_1_v5_gn_2_94460 Lactuca sativa HOM05D005312 ORTHO05D006459 8.9e-120 434.5 409 61.1
MBI07_g40342_MAGBIO Magnolia biondii HOM05D005312 ORTHO05D006459 2.6e-119 433.0 378 62.7
Aqoxy5G03173 Aquilegia oxysepala HOM05D005312 ORTHO05D006459 4.4e-119 432.2 428 59.3
CSS0020784 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 9.8e-119 431.0 369 62.6
AUR62041074 Chenopodium quinoa HOM05D005312 ORTHO05D006459 8.3e-118 427.9 384 60.7
PSO478G3188 Papaver somniferum HOM05D005312 ORTHO05D006459 1.2e-116 424.1 435 59.3
PSO017G1316 Papaver somniferum HOM05D005312 ORTHO05D006459 4.6e-116 422.2 434 59.4
Gohir.D10G081000 Gossypium hirsutum HOM05D005312 ORTHO05D006459 9.5e-114 414.5 379 57.3
Gorai.011G088100 Gossypium raimondii HOM05D005312 ORTHO05D006459 9.5e-114 414.5 379 57.3
Gohir.A10G070100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.8e-112 410.2 376 56.6
Nitab4.5_0002172g0150 Nicotiana tabacum HOM05D005312 ORTHO05D006459 1.2e-108 397.5 392 56.1
CDE02G3855 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 2.7e-108 396.4 363 59.5
CDE06G1073 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 3.9e-107 392.5 405 57.5
ATR0582G189 Amborella trichopoda HOM05D005312 ORTHO05D006459 2.3e-104 383.3 413 52.5
AUR62037835 Chenopodium quinoa HOM05D005312 ORTHO05D006459 9.2e-101 371.3 322 61.5
SEGI_01379 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 4.3e-98 362.5 391 51.2
Zm00001eb170350 Zea mays HOM05D005312 ORTHO05D006459 5.6e-98 362.1 366 54.4
Os11g0522000 Oryza sativa ssp. japonica HOM05D005312 ORTHO05D006459 3.4e-95 352.8 371 51.5
GSVIVG01033003001 Vitis vinifera HOM05D005312 ORTHO05D006459 7.6e-95 351.7 296 62.5
ECA238G3491 Erigeron canadensis HOM05D000001 ORTHO05D000003 2.4e-85 320.1 320 55.6
Ca_26608_v3 Cicer arietinum L. HOM05D005312 ORTHO05D006459 1.5e-74 284.3 420 42.9
VMungo0464G0174 Vigna mungo HOM05D005312 ORTHO05D006459 3.2e-69 266.5 241 59.3
Pp3c21_20660 Physcomitrium patens HOM05D005312 ORTHO05D006459 7.9e-68 261.9 389 41.4
SEGI_20575 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 6.3e-65 252.3 313 46.3
unitig_37.g12041 Utricularia gibba HOM05D005312 ORTHO05D006459 5.9e-63 245.7 211 60.2
Actinidia19557 Actinidia chinensis HOM05D005312 ORTHO05D006459 3.1e-56 223.4 155 72.9
ECA246G2144 Erigeron canadensis HOM05D005312 ORTHO05D006459 6.9e-56 222.2 224 52.7
VMungo0464G1790 Vigna mungo HOM05D005312 ORTHO05D006459 7.7e-55 218.8 149 77.2
Haze_14938 Corylus avellana HOM05D005312 ORTHO05D006459 3.2e-53 213.4 159 69.2
CSS0007293 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 9.4e-53 211.8 190 70.5
HPP92_008243 Vanilla planifolia HOM05D005312 ORTHO05D006459 1.0e-51 208.4 225 53.3
unitig_37.g12040 Utricularia gibba HOM05D005312 ORTHO05D006459 1.3e-46 191.4 145 69.7
Nn3g16305 Nelumbo nucifera HOM05D005312 ORTHO05D006459 1.8e-43 181.0 205 51.2
CBR_g2835 Chara braunii HOM05D005312 ORTHO05D006459 1.7e-41 174.5 356 33.7
AagrBONN_evm.TU.Sc2ySwM_344.1953 Anthoceros agrestis HOM05D005312 ORTHO05D006459 3.7e-41 173.3 296 34.8
SGA_v2.0_scaffold173G39196 Striga asiatica HOM05D005312 ORTHO05D006459 3.0e-19 100.5 111 54.1
CARHR120940 Cardamine hirsuta HOM05D005312 ORTHO05D006459 8.3e-17 92.4 66 74.2
SEGI_29311 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 1.2e-15 88.6 75 57.3
C05p10420 Brassica napus HOM05D005312 ORTHO05D006459 5.4e-08 63.2 36 69.4
C08p14660 Brassica napus HOM05D023945 ORTHO05D042485 5.4e-08 63.2 47 61.7


User provided reference genes

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