Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G26135 Arabidopsis thaliana HOM05D004978 ORTHO05D005621 1.2e-28 129.0 61 100.0
AL6G31360 Arabidopsis lyrata HOM05D004978 ORTHO05D005621 9.4e-13 76.3 39 87.2
AT5G19840 Arabidopsis thaliana HOM05D004978 ORTHO05D005621 3.6e-12 74.3 39 87.2
BraA03t10282Z Brassica rapa HOM05D004978 ORTHO05D005621 1.4e-11 72.4 48 70.8
A03p09660 Brassica napus HOM05D004978 ORTHO05D005621 1.8e-11 72.0 39 82.1
Sp6g24570 Schrenkiella parvula HOM05D004978 ORTHO05D005621 2.3e-11 71.6 39 82.1
Carub.0006s1818 Capsella rubella HOM05D004978 ORTHO05D005621 3.0e-11 71.2 41 75.6
CARHR193040 Cardamine hirsuta HOM05D004978 ORTHO05D005621 3.0e-11 71.2 37 86.5
BcaB01g04828 Brassica carinata HOM05D004978 ORTHO05D005621 6.7e-11 70.1 37 83.8
C03p11220 Brassica napus HOM05D004978 ORTHO05D005621 6.7e-11 70.1 37 83.8
BolC3t13593H Brassica oleracea HOM05D004978 ORTHO05D005621 6.7e-11 70.1 37 83.8
Aa31LG9G14570 Aethionema arabicum HOM05D004978 ORTHO05D005621 2.6e-10 68.2 41 73.2
BcaB01g04842 Brassica carinata HOM05D004978 ORTHO05D005621 3.3e-10 67.8 34 85.3
Thhalv10013262m.g Eutrema salsugineum HOM05D004978 ORTHO05D005621 5.7e-10 67.0 39 76.9
Potri.005G215200 Populus trichocarpa HOM05D004978 ORTHO05D005621 1.8e-08 62.0 54 57.4
GSVIVG01003121001 Vitis vinifera HOM05D004978 ORTHO05D005621 1.8e-08 62.0 37 73.0
Sabra05G0164500 Salix brachista HOM05D004978 ORTHO05D005621 5.3e-08 60.5 54 57.4
Eucgr.K03324 Eucalyptus grandis HOM05D004978 ORTHO05D005621 6.9e-08 60.1 40 65.0
Duzib133G0140 Durio zibethinus HOM05D004978 ORTHO05D005621 1.2e-07 59.3 39 69.2
COL.COLO4_09187 Corchorus olitorius HOM05D004978 ORTHO05D005621 1.5e-07 58.9 33 78.8
CANSAT25G0263 Cannabis sativa HOM05D004978 ORTHO05D005621 2.6e-07 58.2 44 59.1
Thecc.01G271500 Theobroma cacao HOM05D004978 ORTHO05D005621 2.6e-07 58.2 39 66.7
Sed0016751 Sechium edule HOM05D004978 ORTHO05D005621 3.4e-07 57.8 49 49.0
Cfa006202 Carpinus fangiana HOM05D004978 ORTHO05D005621 4.5e-07 57.4 37 64.9
Haze_04642 Corylus avellana HOM05D004978 ORTHO05D005621 4.5e-07 57.4 37 64.9
MD11G1278700 Malus domestica HOM05D004978 ORTHO05D005621 4.5e-07 57.4 59 50.8
Cpa.g.sc52.119 Carica papaya HOM05D004978 ORTHO05D005621 7.7e-07 56.6 37 64.9
ClCG09G007410 Citrullus lanatus HOM05D004978 ORTHO05D005621 7.7e-07 56.6 37 62.2
EL10Ac5g10492 Beta vulgaris HOM05D004978 ORTHO05D005621 1.0e-06 56.2 35 71.4
Ciclev10019332m.g Citrus clementina HOM05D004978 ORTHO05D005621 1.0e-06 56.2 33 75.8
Rhsim01G0272000 Rhododendron simsii HOM05D004978 ORTHO05D005621 1.0e-06 56.2 45 53.3
TWI75G1276 Tripterygium wilfordii HOM05D004978 ORTHO05D005621 1.0e-06 56.2 36 66.7
PGR044G1133 Punica granatum HOM05D004978 ORTHO05D005621 1.3e-06 55.8 34 70.6
Cc01_g19000 Coffea canephora HOM05D004978 ORTHO05D005621 1.7e-06 55.5 37 64.9
Gohir.A08G063900 Gossypium hirsutum HOM05D004978 ORTHO05D005621 1.7e-06 55.5 39 64.1
Gohir.D08G072400 Gossypium hirsutum HOM05D004978 ORTHO05D005621 2.2e-06 55.1 39 64.1
Gorai.004G076600 Gossypium raimondii HOM05D004978 ORTHO05D005621 2.2e-06 55.1 39 64.1
QL12p042266 Quercus lobata HOM05D004978 ORTHO05D005621 2.2e-06 55.1 37 62.2
Sc05g0001310 Simmondsia chinensis HOM05D004978 ORTHO05D005621 2.2e-06 55.1 39 59.0
AUR62011971 Chenopodium quinoa HOM05D004978 ORTHO05D005621 2.9e-06 54.7 35 71.4
AUR62032283 Chenopodium quinoa HOM05D004978 ORTHO05D005621 2.9e-06 54.7 35 71.4
Nn1g02459 Nelumbo nucifera HOM05D004978 ORTHO05D005621 2.9e-06 54.7 41 61.0
MELO3C015807.2 Cucumis melo HOM05D004978 ORTHO05D005621 3.8e-06 54.3 37 59.5
CsaV3_7G027890 Cucumis sativus L. HOM05D004978 ORTHO05D005621 3.8e-06 54.3 37 59.5
Lsat_1_v5_gn_8_93980 Lactuca sativa HOM05D004978 ORTHO05D005621 3.8e-06 54.3 52 50.0
Lalb_Chr02g0142521 Lupinus albus HOM05D004978 ORTHO05D005621 6.5e-06 53.5 40 60.0
TAR636G0163 Trochodendron aralioides HOM05D004978 ORTHO05D005621 6.5e-06 53.5 36 66.7


User provided reference genes

Program Settings