Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G25805 Arabidopsis thaliana HOM05D006863 ORTHO05D009101 2.4e-195 685.3 336 100.0
AL5G14420 Arabidopsis lyrata HOM05D006863 ORTHO05D009101 3.9e-177 624.8 337 91.7
Sp2g15050 Schrenkiella parvula HOM05D006863 ORTHO05D009101 8.7e-169 597.0 334 86.8
Carub.0005s0363 Capsella rubella HOM05D006863 ORTHO05D009101 3.3e-168 595.1 338 87.9
Thhalv10004539m.g Eutrema salsugineum HOM05D006863 ORTHO05D009101 5.1e-161 571.2 337 84.3
BcaC04g21415 Brassica carinata HOM05D006863 ORTHO05D005487 1.1e-158 563.5 332 82.5
BolC9t56057H Brassica oleracea HOM05D006863 ORTHO05D005487 1.1e-158 563.5 332 82.5
C09p32050 Brassica napus HOM05D006863 ORTHO05D009101 5.3e-158 561.2 332 82.2
BraA09t38093Z Brassica rapa HOM05D006863 ORTHO05D005487 4.5e-157 558.1 333 81.1
A09p25060 Brassica napus HOM05D006863 ORTHO05D005487 1.1e-155 553.5 333 80.8
Aa31LG2G6540 Aethionema arabicum HOM05D006863 ORTHO05D009101 5.3e-150 534.6 342 78.4
BcaB07g30631 Brassica carinata HOM05D001825 ORTHO05D009101 1.2e-149 533.5 310 83.9
THA.LOC104825705 Tarenaya hassleriana HOM05D006863 ORTHO05D009101 2.9e-140 502.3 341 73.0
Gohir.1Z049378 Gossypium hirsutum HOM05D006863 ORTHO05D009101 7.0e-118 427.9 293 68.9
Gohir.A13G053600 Gossypium hirsutum HOM05D006863 ORTHO05D009101 7.0e-118 427.9 293 68.9
Gorai.013G081400 Gossypium raimondii HOM05D006863 ORTHO05D009101 2.7e-117 426.0 293 68.6
Gohir.D13G071100 Gossypium hirsutum HOM05D006863 ORTHO05D009101 5.9e-117 424.9 293 68.6
Prupe.1G308400 Prunus persica HOM05D006863 ORTHO05D009101 2.9e-116 422.5 315 65.1
Thecc.02G357800 Theobroma cacao HOM05D006863 ORTHO05D009101 3.8e-116 422.2 276 72.1
RcHm_v2.0_Chr4g0435511 Rosa chinensis HOM05D006863 ORTHO05D009101 1.5e-115 420.2 270 74.4
Atru.chr11.1297 Acer truncatum HOM05D006863 ORTHO05D009101 2.1e-114 416.4 276 71.7
CANSAT56G0117 Cannabis sativa HOM05D006863 ORTHO05D009101 3.6e-114 415.6 282 69.9
Cpa.g.sc1.191 Carica papaya HOM05D006863 ORTHO05D009101 6.1e-114 414.8 303 67.7
TPR.G38252 Trifolium pratense HOM05D006863 ORTHO05D009101 6.1e-114 414.8 277 71.1
Dinv04484 Davidia involucrata HOM05D006863 ORTHO05D009101 8.0e-114 414.5 256 72.3
HanXRQChr17g0552211 Helianthus annuus HOM05D006863 ORTHO05D009101 4.0e-113 412.1 283 66.4
MD13G1044100 Malus domestica HOM05D006863 ORTHO05D009101 5.2e-113 411.8 290 66.9
Lalb_Chr17g0342021 Lupinus albus HOM05D006863 ORTHO05D009101 8.8e-113 411.0 336 60.4
Duzib251G0889 Durio zibethinus HOM05D006863 ORTHO05D009101 7.5e-112 407.9 303 66.0
Ciclev10031676m.g Citrus clementina HOM05D006863 ORTHO05D009101 2.8e-111 406.0 339 61.4
Medtr5g054910 Medicago truncatula HOM05D006863 ORTHO05D009101 2.8e-111 406.0 328 61.9
QL01p043996 Quercus lobata HOM05D006863 ORTHO05D009101 3.7e-111 405.6 254 73.2
GSVIVG01011920001 Vitis vinifera HOM05D006863 ORTHO05D009101 6.3e-111 404.8 277 68.2
Manes.14G100000 Manihot esculenta HOM05D006863 ORTHO05D009101 1.1e-110 404.1 274 67.5
CSS0023691 Camellia sinensis var. sinensis HOM05D006863 ORTHO05D009101 1.4e-110 403.7 293 64.2
Potri.010G127200 Populus trichocarpa HOM05D006863 ORTHO05D009101 1.4e-110 403.7 285 68.1
TAR371G0467 Trochodendron aralioides HOM05D006863 ORTHO05D009101 1.4e-110 403.7 289 66.4
CsaV3_6G003370 Cucumis sativus L. HOM05D006863 ORTHO05D009101 5.4e-110 401.7 273 69.2
Lj3C1017T9 Lonicera japonica HOM05D006863 ORTHO05D009101 7.0e-110 401.4 316 63.0
PGSC0003DMG401015876 Solanum tuberosum HOM05D006863 ORTHO05D009101 9.1e-110 401.0 257 68.9
ClCG08G005160 Citrullus lanatus HOM05D006863 ORTHO05D009101 1.2e-109 400.6 295 65.4
ECA246G5009 Erigeron canadensis HOM05D006863 ORTHO05D009101 2.7e-109 399.4 257 69.6
Nitab4.5_0000280g0240 Nicotiana tabacum HOM05D006863 ORTHO05D009101 3.5e-109 399.1 256 69.1
Phvul.002G082500 Phaseolus vulgaris HOM05D006863 ORTHO05D009101 5.9e-109 398.3 287 65.5
arahy.Tifrunner.gnm1.ann1.S0U20I Arachis hypogaea HOM05D006863 ORTHO05D009101 7.7e-109 397.9 282 67.0
Sed0022103 Sechium edule HOM05D006863 ORTHO05D009101 7.7e-109 397.9 272 66.5
Sabra10G0096600 Salix brachista HOM05D006863 ORTHO05D009101 1.3e-108 397.1 287 66.9
arahy.Tifrunner.gnm1.ann1.2EV214 Arachis hypogaea HOM05D006863 ORTHO05D009101 1.7e-108 396.7 282 66.7
Glyma.08G260300 Glycine max HOM05D006863 ORTHO05D009101 2.3e-108 396.4 291 66.0
Lj2g0005111 Lotus japonicus HOM05D006863 ORTHO05D009101 2.3e-108 396.4 265 70.6
Rhsim09G0110000 Rhododendron simsii HOM05D006863 ORTHO05D009101 3.8e-108 395.6 289 65.4
FAN12G1275 Fragaria x ananassa HOM05D006863 ORTHO05D009101 5.0e-108 395.2 270 71.5
Lsat_1_v5_gn_3_59660 Lactuca sativa HOM05D006863 ORTHO05D009101 5.0e-108 395.2 308 59.4
Sopen04g002190 Solanum pennellii HOM05D006863 ORTHO05D009101 6.6e-108 394.8 257 68.1
EL10Ac6g14444 Beta vulgaris HOM05D006863 ORTHO05D009101 1.1e-107 394.0 274 69.3
Nitab4.5_0009260g0040 Nicotiana tabacum HOM05D006863 ORTHO05D009101 1.9e-107 393.3 256 68.8
Solyc04g007110.4 Solanum lycopersicum HOM05D006863 ORTHO05D009101 2.5e-107 392.9 258 68.6
Eucgr.G02336 Eucalyptus grandis HOM05D006863 ORTHO05D009101 4.2e-107 392.1 263 69.6
Cc11_g10350 Coffea canephora HOM05D006863 ORTHO05D009101 5.5e-107 391.7 280 65.0
Migut.L01080 Erythranthe guttata HOM05D006863 ORTHO05D009101 7.2e-107 391.3 258 69.0
VMungo1215G1485 Vigna mungo HOM05D006863 ORTHO05D009101 4.7e-106 388.7 310 60.6
PGR119G0754 Punica granatum HOM05D006863 ORTHO05D009101 1.4e-105 387.1 280 67.9
AUR62035252 Chenopodium quinoa HOM05D006863 ORTHO05D009101 1.2e-104 384.0 326 59.2
SalBow8G2780 Salvia bowleyana HOM05D006863 ORTHO05D009101 3.4e-104 382.5 254 67.7
Peaxi162Scf00086g00919 Petunia axillaris HOM05D006863 ORTHO05D009101 8.3e-103 377.9 283 61.5
CARHR146720 Cardamine hirsuta HOM05D006863 ORTHO05D009101 1.1e-102 377.5 197 90.9
arahy.Tifrunner.gnm1.ann1.PE9U7E Arachis hypogaea HOM05D006863 ORTHO05D009101 5.4e-102 375.2 316 58.9
Aqoxy3G00331 Aquilegia oxysepala HOM05D006863 ORTHO05D009101 9.2e-102 374.4 255 68.6
vmacro10546 Vaccinium macrocarpon HOM05D006863 ORTHO05D009101 9.2e-102 374.4 348 54.0
MSTRG.824 Avicennia marina HOM05D006863 ORTHO05D009101 2.0e-101 373.2 287 59.9
Ah.03g137770 Amaranthus hybridus HOM05D006863 ORTHO05D005487 3.5e-101 372.5 313 58.8
CiPaw.15G005400 Carya illinoinensis HOM05D006863 ORTHO05D009101 3.9e-100 369.0 225 74.7
FvH4_4g27661 Fragaria vesca HOM05D006863 ORTHO05D009101 6.6e-100 368.2 226 76.5
MBI12_g32420_MAGBIO Magnolia biondii HOM05D006863 ORTHO05D009101 4.7e-98 362.1 252 64.7
Os04g0462300 Oryza sativa ssp. japonica HOM05D006863 ORTHO05D009101 4.7e-98 362.1 252 65.1
PSO447G0382 Papaver somniferum HOM05D006863 ORTHO05D009101 4.0e-97 359.0 250 63.6
PSO210G1549 Papaver somniferum HOM05D006863 ORTHO05D009101 8.9e-97 357.8 249 64.7
SGA_v2.0_scaffold32G13125 Striga asiatica HOM05D006863 ORTHO05D009101 3.4e-96 355.9 338 52.4
Actinidia14870 Actinidia chinensis HOM05D006863 ORTHO05D009101 4.4e-96 355.5 243 67.5
HPP92_023480 Vanilla planifolia HOM05D006863 ORTHO05D009101 4.9e-95 352.1 264 61.7
Nn4g23802 Nelumbo nucifera HOM05D006863 ORTHO05D009101 2.0e-93 346.7 253 64.4
Peaxi162Scf00086g00918 Petunia axillaris HOM05D006863 ORTHO05D009101 7.0e-86 321.6 257 59.1
DCAR_026725 Daucus carota HOM05D006863 ORTHO05D009101 6.2e-82 308.5 277 54.9
Psat4g144720 Pisum sativum HOM05D006863 ORTHO05D009101 6.2e-82 308.5 202 69.3
unitig_22.g6873 Utricularia gibba HOM05D001580 ORTHO05D009101 1.1e-81 307.8 257 56.8
Mapoly0073s0050 Marchantia polymorpha HOM05D006863 ORTHO05D009101 1.3e-79 300.8 260 57.3
TWI75G0199 Tripterygium wilfordii HOM05D006863 ORTHO05D009101 3.2e-78 296.2 182 75.3
ATR0141G001 Amborella trichopoda HOM05D006863 ORTHO05D009101 1.2e-77 294.3 241 57.7
AUR62002895 Chenopodium quinoa HOM05D006863 ORTHO05D009101 4.6e-77 292.4 192 71.4
FAN22G1855 Fragaria x ananassa HOM05D006863 ORTHO05D009101 1.1e-75 287.7 182 73.1
Zm00001eb080610 Zea mays HOM05D006863 ORTHO05D009101 1.9e-75 287.0 228 60.5
SEGI_08911 Sequoiadendron giganteum HOM05D006863 ORTHO05D009101 1.6e-74 283.9 222 59.5
SEGI_20209 Sequoiadendron giganteum HOM05D006863 ORTHO05D009101 1.6e-74 283.9 222 59.5
Pp3c1_42010 Physcomitrium patens HOM05D006863 ORTHO05D009101 2.8e-74 283.1 266 51.1
Haze_17458 Corylus avellana HOM05D006863 ORTHO05D009101 2.6e-72 276.6 253 56.5
SMO111G0216 Selaginella moellendorffii HOM05D006863 ORTHO05D009101 4.6e-69 265.8 268 47.0
Glyma.20G042600 Glycine max HOM05D006863 ORTHO05D009101 7.8e-69 265.0 164 72.0
AUR62002896 Chenopodium quinoa HOM05D006863 ORTHO05D009101 1.3e-68 264.2 184 66.3
Sc04g0006570 Simmondsia chinensis HOM05D006863 ORTHO05D009101 3.1e-65 253.1 182 65.9
MELO3C011551.2 Cucumis melo HOM05D006863 ORTHO05D009101 7.6e-64 248.4 168 66.1
AagrBONN_evm.TU.Sc2ySwM_117.2959 Anthoceros agrestis HOM05D006863 ORTHO05D009101 1.1e-59 234.6 215 50.7
CSS0005134 Camellia sinensis var. sinensis HOM05D006863 ORTHO05D009101 9.9e-56 221.5 273 42.9
CSS0013896 Camellia sinensis var. sinensis HOM05D006863 ORTHO05D009101 9.9e-56 221.5 273 42.9
Ca_27358_v3 Cicer arietinum L. HOM05D006863 ORTHO05D009101 1.2e-53 214.5 194 55.7
COL.COLO4_07899 Corchorus olitorius HOM05D006863 ORTHO05D009101 1.6e-53 214.2 279 43.7
Gorai.012G052200 Gossypium raimondii HOM05D006863 ORTHO05D009101 8.1e-50 201.8 131 67.9
Hund25085 Selenicereus undatus HOM05D006863 ORTHO05D009101 6.9e-49 198.7 153 62.7
Gohir.D04G047100 Gossypium hirsutum HOM05D006863 ORTHO05D009101 9.0e-49 198.4 131 67.2
Gohir.D11G195601 Gossypium hirsutum HOM05D006863 ORTHO05D009101 7.4e-43 178.7 131 64.1
SMO358G0636 Selaginella moellendorffii HOM05D006863 ORTHO05D009101 3.8e-39 166.4 241 37.8
MD16G1044900 Malus domestica HOM05D006863 ORTHO05D009101 9.4e-30 135.2 91 69.2
CDE11G0826 Ceratophyllum demersum HOM05D006863 ORTHO05D009101 7.4e-27 125.6 128 46.9
PRCOL_00006784 Prasinoderma coloniale HOM05D006863 ORTHO05D002945 2.8e-26 123.6 271 35.1
MCO04G047 Micromonas commoda HOM05D006863 ORTHO05D002945 9.1e-25 118.6 271 32.5
Oeu042053.1 Olea europaea HOM05D006863 ORTHO05D009101 2.1e-21 107.5 74 60.8
Cre02.g088500 Chlamydomonas reinhardtii HOM05D002745 ORTHO05D002945 6.1e-21 105.9 256 30.5
Sc04g0006560 Simmondsia chinensis HOM05D006863 ORTHO05D009101 2.0e-19 100.9 74 62.2
Haze_17459 Corylus avellana HOM05D006863 ORTHO05D044797 4.2e-06 56.6 46 58.7


User provided reference genes

Program Settings