Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G25717 Arabidopsis thaliana HOM05D004326 ORTHO05D004570 5.1e-15 83.2 41 100.0
A09p24960 Brassica napus HOM05D004326 ORTHO05D004570 5.1e-15 83.2 41 100.0
BraA09t38084Z Brassica rapa HOM05D004326 ORTHO05D004570 5.1e-15 83.2 41 100.0
Carub.0005s0354 Capsella rubella HOM05D004326 ORTHO05D004570 5.1e-15 83.2 41 100.0
A06p42560 Brassica napus HOM05D004326 ORTHO05D004570 2.6e-14 80.9 41 95.1
BraA06t27171Z Brassica rapa HOM05D004326 ORTHO05D004570 2.6e-14 80.9 41 95.1
BolC7t43991H Brassica oleracea HOM05D004326 ORTHO05D004570 8.2e-13 75.9 41 90.2
TWI79G1601 Tripterygium wilfordii HOM05D004326 ORTHO05D004570 7.0e-12 72.8 41 85.4
Glyma.01G088000 Glycine max HOM05D004326 ORTHO05D004570 7.7e-11 69.3 37 83.8
Glyma.02G100100 Glycine max HOM05D004326 ORTHO05D004570 7.7e-11 69.3 37 83.8
Prupe.1G305400 Prunus persica HOM05D004326 ORTHO05D004570 7.7e-11 69.3 37 86.5
PGR102G0365 Punica granatum HOM05D004326 ORTHO05D004570 7.7e-11 69.3 41 80.5
Gohir.D12G173600 Gossypium hirsutum HOM05D004326 ORTHO05D004570 1.0e-10 68.9 41 85.4
Gorai.008G186200 Gossypium raimondii HOM05D004326 ORTHO05D004570 1.0e-10 68.9 41 85.4
THA.LOC104805244 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 1.0e-10 68.9 41 87.8
THA.LOC104825713 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 1.0e-10 68.9 41 87.8
Gohir.A12G170400 Gossypium hirsutum HOM05D004326 ORTHO05D004570 1.3e-10 68.6 41 82.9
CAN.G184.91 Capsicum annuum HOM05D004326 ORTHO05D004570 2.2e-10 67.8 41 82.9
Duzib251G0285 Durio zibethinus HOM05D004326 ORTHO05D004570 2.2e-10 67.8 41 82.9
Gohir.D13G069701 Gossypium hirsutum HOM05D004326 ORTHO05D004570 2.2e-10 67.8 41 82.9
Gohir.A13G053100 Gossypium hirsutum HOM05D004326 ORTHO05D004570 2.9e-10 67.4 41 82.9
Atru.chr11.1355 Acer truncatum HOM05D004326 ORTHO05D004570 3.8e-10 67.0 41 82.9
TWI31G0110 Tripterygium wilfordii HOM05D004326 ORTHO05D004570 3.8e-10 67.0 42 81.0
Duzib268G0802 Durio zibethinus HOM05D004326 ORTHO05D004570 6.5e-10 66.2 41 80.5
Manes.06G072200 Manihot esculenta HOM05D004326 ORTHO05D004570 6.5e-10 66.2 41 80.5
Thecc.02G361000 Theobroma cacao HOM05D004326 ORTHO05D004570 6.5e-10 66.2 41 80.5
A06p08510 Brassica napus HOM05D004326 ORTHO05D004570 1.1e-09 65.5 41 82.9
A08p32390 Brassica napus HOM05D004326 ORTHO05D004570 1.1e-09 65.5 41 82.9
C05p10110 Brassica napus HOM05D004326 ORTHO05D004570 1.1e-09 65.5 41 82.9
BolC5t29757H Brassica oleracea HOM05D004326 ORTHO05D004570 1.1e-09 65.5 41 82.9
BolC8t49226H Brassica oleracea HOM05D004326 ORTHO05D004570 1.1e-09 65.5 41 82.9
BraA06t24046Z Brassica rapa HOM05D004326 ORTHO05D004570 1.1e-09 65.5 41 82.9
BraA08t35162Z Brassica rapa HOM05D004326 ORTHO05D004570 1.1e-09 65.5 41 82.9
Oeu058414.1 Olea europaea HOM05D004326 ORTHO05D004570 1.1e-09 65.5 41 78.0
CANSAT64G1998 Cannabis sativa HOM05D004326 ORTHO05D004570 1.5e-09 65.1 41 80.5
CiPaw.15G003600 Carya illinoinensis HOM05D004326 ORTHO05D004570 1.5e-09 65.1 41 80.5
Glyma.20G185900 Glycine max HOM05D004326 ORTHO05D004570 1.5e-09 65.1 41 80.5
Phvul.007G102250 Phaseolus vulgaris HOM05D004326 ORTHO05D004570 1.5e-09 65.1 41 80.5
MELO3C008521.2 Cucumis melo HOM05D004326 ORTHO05D004570 1.9e-09 64.7 42 78.6
AL1G24940 Arabidopsis lyrata HOM05D004326 ORTHO05D004570 2.5e-09 64.3 41 80.5
AT1G13245 Arabidopsis thaliana HOM05D004326 ORTHO05D004570 2.5e-09 64.3 41 80.5
Carub.0001s1297 Capsella rubella HOM05D004326 ORTHO05D004570 2.5e-09 64.3 41 80.5
MD13G1046500 Malus domestica HOM05D004326 ORTHO05D004570 2.5e-09 64.3 39 82.1
MD16G1048200 Malus domestica HOM05D004326 ORTHO05D004570 2.5e-09 64.3 39 82.1
C08p16040 Brassica napus HOM05D004326 ORTHO05D004570 3.2e-09 63.9 41 80.5
PGR119G2456 Punica granatum HOM05D004326 ORTHO05D004570 3.2e-09 63.9 37 86.5
Glyma.10G204600 Glycine max HOM05D004326 ORTHO05D004570 4.2e-09 63.5 41 78.0
Manes.14G097600 Manihot esculenta HOM05D004326 ORTHO05D004570 4.2e-09 63.5 41 78.0
Potri.008G116700 Populus trichocarpa HOM05D004326 ORTHO05D004570 4.2e-09 63.5 41 75.6
CARHR013620 Cardamine hirsuta HOM05D004326 ORTHO05D004570 5.5e-09 63.2 41 78.0
ClCG03G009910 Citrullus lanatus HOM05D004326 ORTHO05D004570 5.5e-09 63.2 38 81.6
Lalb_Chr02g0151761 Lupinus albus HOM05D004326 ORTHO05D004570 5.5e-09 63.2 40 75.0
Potri.010G129600 Populus trichocarpa HOM05D004326 ORTHO05D004570 5.5e-09 63.2 41 75.6
Lalb_Chr17g0341881 Lupinus albus HOM05D004326 ORTHO05D004570 7.2e-09 62.8 42 71.4
Migut.K01265 Erythranthe guttata HOM05D004326 ORTHO05D004570 1.2e-08 62.0 37 83.8
Lalb_Chr10g0099751 Lupinus albus HOM05D004326 ORTHO05D004570 1.2e-08 62.0 42 73.8
PGSC0003DMG400007475 Solanum tuberosum HOM05D004326 ORTHO05D004570 1.6e-08 61.6 35 82.9
Eucgr.G02348 Eucalyptus grandis HOM05D004326 ORTHO05D004570 2.1e-08 61.2 41 75.6
PSO063G2411 Papaver somniferum HOM05D004326 ORTHO05D004570 2.7e-08 60.8 41 73.2
PSO782G5714 Papaver somniferum HOM05D004326 ORTHO05D004570 2.7e-08 60.8 41 73.2
Medtr1g093650 Medicago truncatula HOM05D004326 ORTHO05D004570 3.6e-08 60.5 42 73.8
PSO017G5195 Papaver somniferum HOM05D004326 ORTHO05D004570 3.6e-08 60.5 35 77.1
Lalb_Chr06g0170221 Lupinus albus HOM05D004326 ORTHO05D004570 4.7e-08 60.1 32 81.2
AL2G27790 Arabidopsis lyrata HOM05D004326 ORTHO05D004570 6.1e-08 59.7 36 75.0
AT1G68825 Arabidopsis thaliana HOM05D004326 ORTHO05D004570 6.1e-08 59.7 36 75.0
C06p37300 Brassica napus HOM05D004326 ORTHO05D004570 6.1e-08 59.7 36 75.0
PSO478G3685 Papaver somniferum HOM05D004326 ORTHO05D004570 6.1e-08 59.7 36 75.0
THA.LOC109116167 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 6.1e-08 59.7 31 83.9
Carub.0002s1541 Capsella rubella HOM05D004326 ORTHO05D004570 1.4e-07 58.5 36 72.2
Glyma.10G129200 Glycine max HOM05D004326 ORTHO05D004570 2.3e-07 57.8 41 73.2
Migut.L01097 Erythranthe guttata HOM05D004326 ORTHO05D004570 3.0e-07 57.4 32 84.4
PGR083G2212 Punica granatum HOM05D004326 ORTHO05D004570 3.0e-07 57.4 40 65.0
THA.LOC109117025 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 4.0e-07 57.0 36 69.4
Manes.01G107900 Manihot esculenta HOM05D004326 ORTHO05D004570 6.7e-07 56.2 40 62.5
Manes.01G020350 Manihot esculenta HOM05D004326 ORTHO05D004570 8.8e-07 55.8 40 62.5
C06p43000 Brassica napus HOM05D004326 ORTHO05D004570 1.1e-06 55.5 37 62.2
BolC6t39135H Brassica oleracea HOM05D004326 ORTHO05D004570 1.1e-06 55.5 37 62.2
Gohir.A07G168701 Gossypium hirsutum HOM05D004326 ORTHO05D004570 1.5e-06 55.1 41 65.9
Gohir.D07G179500 Gossypium hirsutum HOM05D004326 ORTHO05D004570 1.5e-06 55.1 41 65.9
Gorai.001G200500 Gossypium raimondii HOM05D004326 ORTHO05D004570 1.5e-06 55.1 41 65.9
PSO063G2252 Papaver somniferum HOM05D004326 ORTHO05D004570 2.0e-06 54.7 41 65.9
BraA07t31013Z Brassica rapa HOM05D004326 ORTHO05D004570 2.6e-06 54.3 37 62.2
Duzib138G0964 Durio zibethinus HOM05D004326 ORTHO05D004570 2.6e-06 54.3 41 63.4
FvH4_6g45391 Fragaria vesca HOM05D004326 ORTHO05D004570 2.6e-06 54.3 32 75.0
FAN14G2544 Fragaria x ananassa HOM05D004326 ORTHO05D004570 2.6e-06 54.3 32 75.0
FAN14G3188 Fragaria x ananassa HOM05D004326 ORTHO05D004570 2.6e-06 54.3 32 75.0
Potri.017G112100 Populus trichocarpa HOM05D004326 ORTHO05D004570 3.3e-06 53.9 41 61.0
CiPaw.03G059200 Carya illinoinensis HOM05D004326 ORTHO05D004570 4.4e-06 53.5 37 70.3
Carub.0002s1354 Capsella rubella HOM05D004326 ORTHO05D004570 5.7e-06 53.1 37 59.5
Glyma.12G187300 Glycine max HOM05D004326 ORTHO05D004570 5.7e-06 53.1 36 77.8
THA.LOC109117071 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 5.7e-06 53.1 37 62.2
Thecc.04G138400 Theobroma cacao HOM05D004326 ORTHO05D004570 5.7e-06 53.1 41 61.0
Glyma.08G256500 Glycine max HOM05D004326 ORTHO05D004570 7.5e-06 52.8 37 67.6
Phvul.008G020301 Phaseolus vulgaris HOM05D004326 ORTHO05D004570 7.5e-06 52.8 37 67.6
Potri.004G102950 Populus trichocarpa HOM05D004326 ORTHO05D004570 7.5e-06 52.8 36 63.9
RcHm_v2.0_Chr2g0163211 Rosa chinensis HOM05D004326 ORTHO05D004570 7.5e-06 52.8 37 67.6
Prupe.3G240100 Prunus persica HOM05D004326 ORTHO05D004570 9.7e-06 52.4 32 71.9
Sed0016204 Sechium edule HOM05D004326 ORTHO05D004570 9.7e-06 52.4 36 75.0
THA.LOC109116378 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 9.7e-06 52.4 37 62.2
TWI12G0968 Tripterygium wilfordii HOM05D004326 ORTHO05D004570 9.7e-06 52.4 30 76.7
TWI56G0546 Tripterygium wilfordii HOM05D004326 ORTHO05D004570 9.7e-06 52.4 30 76.7


User provided reference genes

Program Settings