Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G25597 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 8.6e-90 333.6 161 100.0
AL5G14110 Arabidopsis lyrata HOM05D007408 ORTHO05D009325 6.6e-82 307.4 161 93.8
Carub.0005s0338 Capsella rubella HOM05D007408 ORTHO05D009325 3.0e-74 282.0 162 85.8
C07p34420 Brassica napus HOM05D007408 ORTHO05D009325 6.6e-74 280.8 157 87.9
Sp2g14870 Schrenkiella parvula HOM05D007408 ORTHO05D009325 6.6e-74 280.8 158 88.6
BraA06t27184Z Brassica rapa HOM05D007408 ORTHO05D009325 4.3e-73 278.1 157 87.3
Thhalv10005058m.g Eutrema salsugineum HOM05D007408 ORTHO05D009325 7.3e-73 277.3 159 86.8
A06p42710 Brassica napus HOM05D007408 ORTHO05D009325 9.5e-73 276.9 156 87.8
BcaC06g33976 Brassica carinata HOM05D007408 ORTHO05D009325 2.1e-72 275.8 157 86.6
CARHR146570 Cardamine hirsuta HOM05D007408 ORTHO05D009325 4.7e-72 274.6 161 85.1
BcaC03g17274 Brassica carinata HOM05D007408 ORTHO05D009325 4.1e-68 261.5 157 81.5
C02p52180 Brassica napus HOM05D007408 ORTHO05D009325 4.1e-68 261.5 157 81.5
BolC2t11303H Brassica oleracea HOM05D007408 ORTHO05D009325 4.1e-68 261.5 157 81.5
BraA02t08410Z Brassica rapa HOM05D007408 ORTHO05D009325 3.5e-67 258.5 157 80.9
BcaC06g31130 Brassica carinata HOM05D007408 ORTHO05D009325 4.6e-67 258.1 154 83.1
BcaB07g30265 Brassica carinata HOM05D007408 ORTHO05D009325 7.3e-65 250.8 156 80.8
A02p33920 Brassica napus HOM05D007408 ORTHO05D009325 1.2e-59 233.4 144 79.9
BolC7t43970H Brassica oleracea HOM05D007408 ORTHO05D009325 3.0e-42 175.6 103 84.5
THA.LOC104805235 Tarenaya hassleriana HOM05D007408 ORTHO05D009325 7.4e-41 171.0 153 58.8
MD13G1050800 Malus domestica HOM05D007408 ORTHO05D009325 1.5e-22 110.2 148 47.3
RcHm_v2.0_Chr4g0436431 Rosa chinensis HOM05D007408 ORTHO05D009325 2.6e-22 109.4 146 47.3
Cpa.g.sc1.248 Carica papaya HOM05D007408 ORTHO05D009325 2.9e-21 105.9 115 47.8
Gorai.008G188700 Gossypium raimondii HOM05D007408 ORTHO05D009325 2.9e-21 105.9 154 41.6
Gohir.D12G176300 Gossypium hirsutum HOM05D007408 ORTHO05D009325 3.8e-21 105.5 154 40.9
THA.LOC104822179 Tarenaya hassleriana HOM05D007408 ORTHO05D009325 1.1e-20 104.0 159 40.9
Cfa008792 Carpinus fangiana HOM05D007408 ORTHO05D009325 1.4e-20 103.6 154 43.5
Cc11_g10990 Coffea canephora HOM05D007408 ORTHO05D009325 1.4e-20 103.6 146 44.5
Glyma.16G099500 Glycine max HOM05D007408 ORTHO05D009325 3.2e-20 102.4 154 42.9
Sabra08G0084200 Salix brachista HOM05D007408 ORTHO05D009325 3.2e-20 102.4 143 43.4
Manes.06G075900 Manihot esculenta HOM05D007408 ORTHO05D009325 7.2e-20 101.3 148 43.2
Gohir.A12G173800 Gossypium hirsutum HOM05D007408 ORTHO05D009325 1.2e-19 100.5 155 40.6
Atru.chr11.1432 Acer truncatum HOM05D007408 ORTHO05D009325 1.6e-19 100.1 153 41.2
DCAR_026703 Daucus carota HOM05D002818 ORTHO05D003244 2.1e-19 99.8 120 42.5
FAN17G1226 Fragaria x ananassa HOM05D000085 ORTHO05D000274 2.1e-19 99.8 140 45.7
FAN07G2148 Fragaria x ananassa HOM05D000085 ORTHO05D000274 2.7e-19 99.4 148 44.6
Haze_11804 Corylus avellana HOM05D007408 ORTHO05D009325 3.6e-19 99.0 131 45.0
FAN22G2286 Fragaria x ananassa HOM05D000227 ORTHO05D001491 4.7e-19 98.6 143 44.8
FAN12G0389 Fragaria x ananassa HOM05D000085 ORTHO05D000274 6.1e-19 98.2 139 45.3
Phvul.003G281600 Phaseolus vulgaris HOM05D007408 ORTHO05D009325 1.0e-18 97.4 151 41.7
Prupe.1G301300 Prunus persica HOM05D007408 ORTHO05D009325 1.4e-18 97.1 150 40.7
Solyc05g010130.1 Solanum lycopersicum HOM05D007408 ORTHO05D009325 2.3e-18 96.3 128 43.0
Oeu024124.1 Olea europaea HOM05D007408 ORTHO05D009325 3.9e-18 95.5 145 39.3
Potri.008G111500 Populus trichocarpa HOM05D007408 ORTHO05D009325 3.9e-18 95.5 150 42.0
PGR119G0146 Punica granatum HOM05D007408 ORTHO05D009325 6.7e-18 94.7 147 41.5
VMungo0251G2162 Vigna mungo HOM05D007408 ORTHO05D009325 1.5e-17 93.6 125 43.2
Eucgr.B03072 Eucalyptus grandis HOM05D007408 ORTHO05D009325 2.6e-17 92.8 153 39.2
Lj4g0027659 Lotus japonicus HOM05D007408 ORTHO05D009325 2.6e-17 92.8 149 40.3
TWI79G0837 Tripterygium wilfordii HOM05D007408 ORTHO05D009325 2.6e-17 92.8 151 38.4
CiPaw.06G098200 Carya illinoinensis HOM05D007408 ORTHO05D009325 9.7e-17 90.9 161 40.4
SGA_v2.0_scaffold36G14509 Striga asiatica HOM05D007408 ORTHO05D009325 1.7e-16 90.1 127 40.9
CARHR061510 Cardamine hirsuta HOM05D007408 ORTHO05D009325 4.8e-16 88.6 124 35.5
HanXRQChr17g0551421 Helianthus annuus HOM05D007408 ORTHO05D009325 6.3e-16 88.2 121 43.8
CANSAT64G2960 Cannabis sativa HOM05D007408 ORTHO05D009325 8.2e-16 87.8 150 36.7
Lalb_Chr20g0122411 Lupinus albus HOM05D007408 ORTHO05D009325 1.1e-15 87.4 129 42.6
TPR.G24816 Trifolium pratense HOM05D007408 ORTHO05D009325 1.4e-15 87.0 154 39.0
AL1G39610 Arabidopsis lyrata HOM05D007408 ORTHO05D009325 1.8e-15 86.7 114 39.5
Sp5g23800 Schrenkiella parvula HOM05D007408 ORTHO05D009325 2.4e-15 86.3 164 34.8
A08p27160 Brassica napus HOM05D007408 ORTHO05D009325 3.1e-15 85.9 116 41.4
TAR629G0610 Trochodendron aralioides HOM05D007408 ORTHO05D009325 3.1e-15 85.9 151 38.4
C03p72700 Brassica napus HOM05D007408 ORTHO05D009325 9.1e-15 84.3 117 43.6
BolC3t19568H Brassica oleracea HOM05D007408 ORTHO05D009325 9.1e-15 84.3 117 43.6
arahy.Tifrunner.gnm1.ann1.24G1QJ Arachis hypogaea HOM05D007408 ORTHO05D009325 1.2e-14 84.0 144 35.4
HanXRQChr15g0475971 Helianthus annuus HOM05D007408 ORTHO05D009325 1.2e-14 84.0 122 42.6
BcaB03g15446 Brassica carinata HOM05D007408 ORTHO05D009325 1.5e-14 83.6 157 35.7
C06p41170 Brassica napus HOM05D000085 ORTHO05D000274 1.5e-14 83.6 158 32.3
Medtr8g069910 Medicago truncatula HOM05D007408 ORTHO05D009325 1.5e-14 83.6 143 37.8
BcaC08g46321 Brassica carinata HOM05D000085 ORTHO05D000274 2.0e-14 83.2 158 31.6
BolC6t39308H Brassica oleracea HOM05D000085 ORTHO05D000274 2.0e-14 83.2 158 31.6
BraA08t34661Z Brassica rapa HOM05D007408 ORTHO05D009325 2.0e-14 83.2 117 42.7
Migut.L01119 Erythranthe guttata HOM05D007408 ORTHO05D009325 2.0e-14 83.2 136 39.0
AT1G26140 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 2.6e-14 82.8 117 40.2
Thecc.02G364900 Theobroma cacao HOM05D007408 ORTHO05D009325 3.4e-14 82.4 126 42.1
Lsat_1_v5_gn_3_60200 Lactuca sativa HOM05D007408 ORTHO05D009325 4.5e-14 82.0 119 41.2
SalBow8G1270 Salvia bowleyana HOM05D007408 ORTHO05D009325 7.7e-14 81.3 130 40.0
SalBow8G3082 Salvia bowleyana HOM05D007408 ORTHO05D009325 7.7e-14 81.3 130 40.0
Ah.02g127260 Amaranthus hybridus HOM05D007408 ORTHO05D009325 1.0e-13 80.9 172 31.4
AT1G68700 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 1.0e-13 80.9 137 37.2
A09p39710 Brassica napus HOM05D007408 ORTHO05D009325 1.3e-13 80.5 114 41.2
BraA09t39470Z Brassica rapa HOM05D007408 ORTHO05D009325 1.3e-13 80.5 114 41.2
Thhalv10009687m.g Eutrema salsugineum HOM05D007408 ORTHO05D009325 1.7e-13 80.1 123 39.8
A07p35100 Brassica napus HOM05D000085 ORTHO05D000274 2.2e-13 79.7 156 32.1
BraA07t31103Z Brassica rapa HOM05D000085 ORTHO05D000274 2.2e-13 79.7 156 32.1
Ciclev10033573m.g Citrus clementina HOM05D007408 ORTHO05D009325 2.2e-13 79.7 111 38.7
BcaB03g15828 Brassica carinata HOM05D007408 ORTHO05D009325 2.9e-13 79.3 134 32.8
C05p24760 Brassica napus HOM05D007408 ORTHO05D009325 5.0e-13 78.6 115 40.0
Carub.0001s2482 Capsella rubella HOM05D007408 ORTHO05D009325 5.0e-13 78.6 123 39.8
CARHR025780 Cardamine hirsuta HOM05D007408 ORTHO05D009325 5.0e-13 78.6 115 42.6
Sc11g0002930 Simmondsia chinensis HOM05D007408 ORTHO05D009325 1.1e-12 77.4 151 38.4
BcaC05g26429 Brassica carinata HOM05D007408 ORTHO05D009325 1.4e-12 77.0 115 39.1
C06p37420 Brassica napus HOM05D007408 ORTHO05D009325 1.4e-12 77.0 124 37.9
Sp1g22520 Schrenkiella parvula HOM05D007408 ORTHO05D009325 1.4e-12 77.0 114 40.4
BraA07t30814Z Brassica rapa HOM05D007408 ORTHO05D009325 1.9e-12 76.6 124 37.1
A07p31850 Brassica napus HOM05D007408 ORTHO05D009325 2.5e-12 76.3 124 37.1
PSO782G1144 Papaver somniferum HOM05D007408 ORTHO05D009325 2.7e-11 72.8 116 37.9
Carub.0002s1524 Capsella rubella HOM05D007408 ORTHO05D009325 1.0e-10 70.9 129 32.6
CsaV3_2G010890 Cucumis sativus L. HOM05D007408 ORTHO05D009325 1.0e-10 70.9 146 33.6
HanXRQChr12g0365241 Helianthus annuus HOM05D007408 ORTHO05D009325 1.0e-10 70.9 133 36.1
Psat4g113200 Pisum sativum HOM05D007408 ORTHO05D009325 3.0e-10 69.3 145 35.2
BolC6t38845H Brassica oleracea HOM05D000085 ORTHO05D000274 4.4e-09 65.5 117 35.9
Manes.14G095101 Manihot esculenta HOM05D007408 ORTHO05D009325 4.4e-09 65.5 56 55.4
Sed0018728 Sechium edule HOM05D007408 ORTHO05D009325 2.8e-08 62.8 119 37.0
BcaC08g43155 Brassica carinata HOM05D007408 ORTHO05D009325 1.4e-07 60.5 114 32.5
HPP92_003100 Vanilla planifolia HOM05D007408 ORTHO05D009325 2.4e-07 59.7 43 60.5
HPP92_003114 Vanilla planifolia HOM05D007408 ORTHO05D009325 7.0e-07 58.2 112 33.0
Aqoxy3G03838 Aquilegia oxysepala HOM05D007408 ORTHO05D009325 1.2e-06 57.4 126 32.5
PSO063G0414 Papaver somniferum HOM05D007408 ORTHO05D009325 1.2e-06 57.4 117 35.9


User provided reference genes

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