Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G25120 Arabidopsis thaliana HOM05D006799 ORTHO05D008391 1.0e-102 376.7 190 100.0
AL3G40810 Arabidopsis lyrata HOM05D006799 ORTHO05D008391 8.6e-97 357.1 190 95.3
Carub.0003s2545 Capsella rubella HOM05D006799 ORTHO05D008391 5.7e-93 344.4 189 91.0
CARHR101440 Cardamine hirsuta HOM05D006799 ORTHO05D008391 5.8e-85 317.8 186 83.9
Thhalv10002682m.g Eutrema salsugineum HOM05D006799 ORTHO05D008391 4.1e-75 285.0 189 76.7
A07p07240 Brassica napus HOM05D006799 ORTHO05D008391 1.6e-74 283.1 189 75.1
BcaC06g35782 Brassica carinata HOM05D006799 ORTHO05D008391 4.6e-74 281.6 189 75.1
BolC7t41559H Brassica oleracea HOM05D006799 ORTHO05D008391 1.1e-72 276.9 190 74.7
C07p10930 Brassica napus HOM05D006799 ORTHO05D008391 2.5e-72 275.8 190 74.2
BraA07t28510Z Brassica rapa HOM05D006799 ORTHO05D008391 3.3e-72 275.4 189 73.5
Sp3g22710 Schrenkiella parvula HOM05D006799 ORTHO05D008391 9.5e-72 273.9 189 73.0
THA.LOC104804623 Tarenaya hassleriana HOM05D006799 ORTHO05D008391 3.4e-69 265.4 192 68.2
Aa31LG9G5010 Aethionema arabicum HOM05D006799 ORTHO05D008391 3.7e-68 261.9 192 68.2
BcaB06g26722 Brassica carinata HOM05D006799 ORTHO05D008391 1.2e-66 256.9 189 70.9
BcaB03g16157 Brassica carinata HOM05D006799 ORTHO05D008391 2.4e-59 232.6 181 63.0
A04p08990 Brassica napus HOM05D006799 ORTHO05D008391 2.4e-59 232.6 185 61.6
BraA04t16594Z Brassica rapa HOM05D006799 ORTHO05D008391 2.4e-59 232.6 185 61.6
BcaC02g09450 Brassica carinata HOM05D006799 ORTHO05D008391 2.7e-58 229.2 185 62.2
C04p42860 Brassica napus HOM05D006799 ORTHO05D008391 1.3e-57 226.9 181 63.5
BolC4t25853H Brassica oleracea HOM05D006799 ORTHO05D008391 1.3e-57 226.9 185 62.2
CARHR218390 Cardamine hirsuta HOM05D006799 ORTHO05D008391 1.7e-57 226.5 180 63.9
Cpa.g.sc21.107 Carica papaya HOM05D006799 ORTHO05D008391 2.9e-52 209.1 161 63.4
PGR044G2699 Punica granatum HOM05D006799 ORTHO05D008391 3.8e-52 208.8 196 55.6
Thhalv10026882m.g Eutrema salsugineum HOM05D006799 ORTHO05D008391 8.4e-52 207.6 178 60.1
Eucgr.K02137 Eucalyptus grandis HOM05D006799 ORTHO05D008391 5.4e-51 204.9 160 65.0
ClCG09G008610 Citrullus lanatus HOM05D006799 ORTHO05D008391 1.6e-50 203.4 193 55.4
Dinv12648 Davidia involucrata HOM05D006799 ORTHO05D008391 3.0e-49 199.1 173 60.1
Sc17g0002120 Simmondsia chinensis HOM05D006799 ORTHO05D008391 1.1e-48 197.2 178 59.0
Thecc.01G219900 Theobroma cacao HOM05D006799 ORTHO05D008391 1.1e-48 197.2 166 64.5
Manes.13G049500 Manihot esculenta HOM05D006799 ORTHO05D008391 1.5e-48 196.8 168 60.7
CsaV3_7G026360 Cucumis sativus L. HOM05D006799 ORTHO05D008391 1.9e-48 196.4 193 54.9
Sed0008494 Sechium edule HOM05D006799 ORTHO05D008391 3.3e-48 195.7 184 54.9
Actinidia23709 Actinidia chinensis HOM05D006799 ORTHO05D008391 4.3e-48 195.3 173 61.3
COL.COLO4_15616 Corchorus olitorius HOM05D006799 ORTHO05D008391 7.3e-48 194.5 186 55.9
Sabra02G0187300 Salix brachista HOM05D006799 ORTHO05D008391 9.6e-48 194.1 193 56.0
Potri.002G246000 Populus trichocarpa HOM05D006799 ORTHO05D008391 1.6e-47 193.4 170 58.2
TAR362G0955 Trochodendron aralioides HOM05D006799 ORTHO05D008391 2.1e-47 193.0 174 57.5
Migut.N00632 Erythranthe guttata HOM05D006799 ORTHO05D008391 6.2e-47 191.4 189 55.6
Hma1.2p1_0226F.1_g095380 Hydrangea macrophylla HOM05D006799 ORTHO05D008391 1.1e-46 190.7 196 52.0
Hund05578 Selenicereus undatus HOM05D006799 ORTHO05D008391 1.1e-46 190.7 184 53.8
TWI18G0944 Tripterygium wilfordii HOM05D006799 ORTHO05D008391 1.1e-46 190.7 190 54.7
Peaxi162Scf00068g02310 Petunia axillaris HOM05D006799 ORTHO05D008391 1.4e-46 190.3 170 58.8
EL10Ac5g12475 Beta vulgaris HOM05D006799 ORTHO05D008391 1.8e-46 189.9 164 57.9
Ciclev10022385m.g Citrus clementina HOM05D006799 ORTHO05D008391 1.8e-46 189.9 167 56.9
Atru.chr6.1426 Acer truncatum HOM05D006799 ORTHO05D008391 2.4e-46 189.5 170 57.1
MSTRG.17994 Avicennia marina HOM05D006799 ORTHO05D008391 2.4e-46 189.5 192 53.6
Nitab4.5_0002641g0110 Nicotiana tabacum HOM05D006799 ORTHO05D008391 2.4e-46 189.5 190 54.7
CANSAT01G3095 Cannabis sativa HOM05D006799 ORTHO05D008391 5.3e-46 188.3 189 54.5
Nitab4.5_0000045g0540 Nicotiana tabacum HOM05D006799 ORTHO05D008391 5.3e-46 188.3 167 60.5
MELO3C021082.2 Cucumis melo HOM05D006799 ORTHO05D008391 1.2e-45 187.2 203 51.2
DCAR_012670 Daucus carota HOM05D006799 ORTHO05D008391 1.2e-45 187.2 185 54.1
Lj1C89G17 Lonicera japonica HOM05D006799 ORTHO05D008391 1.5e-45 186.8 165 58.8
SGA_v2.0_scaffold6G03220 Striga asiatica HOM05D006799 ORTHO05D008391 1.5e-45 186.8 163 62.6
Gohir.A07G093200 Gossypium hirsutum HOM05D006799 ORTHO05D008391 2.6e-45 186.0 184 56.5
CAN.G181.54 Capsicum annuum HOM05D006799 ORTHO05D008391 3.4e-45 185.7 167 59.3
Sopen06g002680 Solanum pennellii HOM05D006799 ORTHO05D008391 3.4e-45 185.7 167 59.9
Gorai.001G105200 Gossypium raimondii HOM05D006799 ORTHO05D008391 4.5e-45 185.3 184 56.0
GSVIVG01003251001 Vitis vinifera HOM05D006799 ORTHO05D008391 4.5e-45 185.3 167 57.5
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 5.8e-45 184.9 199 49.7
Gohir.D07G097800 Gossypium hirsutum HOM05D006799 ORTHO05D008391 5.8e-45 184.9 184 56.0
Prupe.8G198800 Prunus persica HOM05D006799 ORTHO05D008391 5.8e-45 184.9 172 54.7
Solyc06g007800.4 Solanum lycopersicum HOM05D006799 ORTHO05D008391 5.8e-45 184.9 167 59.9
Haze_15251 Corylus avellana HOM05D006799 ORTHO05D008391 7.6e-45 184.5 173 56.1
CSS0002557 Camellia sinensis var. sinensis HOM05D006799 ORTHO05D008391 9.9e-45 184.1 173 56.6
Rhsim01G0253200 Rhododendron simsii HOM05D006799 ORTHO05D008391 9.9e-45 184.1 173 57.2
PGSC0003DMG400022033 Solanum tuberosum HOM05D006799 ORTHO05D008391 1.3e-44 183.7 167 58.7
Aqoxy5G00028 Aquilegia oxysepala HOM05D006799 ORTHO05D008391 2.9e-44 182.6 174 55.7
Duzib138G1661 Durio zibethinus HOM05D006799 ORTHO05D008391 2.9e-44 182.6 161 60.2
FvH4_2g18530 Fragaria vesca HOM05D006799 ORTHO05D008391 2.9e-44 182.6 199 49.2
CiPaw.02G023800 Carya illinoinensis HOM05D006799 ORTHO05D008391 3.8e-44 182.2 172 55.2
Cc01_g16700 Coffea canephora HOM05D006799 ORTHO05D008391 3.8e-44 182.2 197 51.8
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 3.8e-44 182.2 199 49.2
MD10G1159700 Malus domestica HOM05D006799 ORTHO05D008391 4.9e-44 181.8 174 54.6
MBI11_g07417_MAGBIO Magnolia biondii HOM05D006799 ORTHO05D008391 6.4e-44 181.4 172 55.2
QL09p051225 Quercus lobata HOM05D006799 ORTHO05D008391 8.4e-44 181.0 172 54.1
RcHm_v2.0_Chr6g0284091 Rosa chinensis HOM05D006799 ORTHO05D008391 1.9e-43 179.9 203 48.3
arahy.Tifrunner.gnm1.ann1.AR5NL3 Arachis hypogaea HOM05D006799 ORTHO05D008391 2.4e-43 179.5 195 51.8
Dinv19171 Davidia involucrata HOM05D006799 ORTHO05D008391 2.4e-43 179.5 154 63.0
MD05G1171500 Malus domestica HOM05D006799 ORTHO05D008391 4.2e-43 178.7 174 53.4
Nitab4.5_0002616g0150 Nicotiana tabacum HOM05D006799 ORTHO05D008391 5.5e-43 178.3 214 49.1
SalBow3G4070 Salvia bowleyana HOM05D006799 ORTHO05D008391 5.5e-43 178.3 162 56.2
arahy.Tifrunner.gnm1.ann1.H272JM Arachis hypogaea HOM05D006799 ORTHO05D008391 1.6e-42 176.8 195 50.8
AUR62019885 Chenopodium quinoa HOM05D006799 ORTHO05D008391 2.1e-42 176.4 182 50.0
AUR62007023 Chenopodium quinoa HOM05D006799 ORTHO05D008391 2.7e-42 176.0 182 50.0
unitig_0.g374 Utricularia gibba HOM05D006799 ORTHO05D008391 2.7e-42 176.0 180 51.7
Os04g0376100 Oryza sativa ssp. japonica HOM05D006799 ORTHO05D008391 3.9e-41 172.2 193 49.2
CDE05G2155 Ceratophyllum demersum HOM05D006799 ORTHO05D008391 6.7e-41 171.4 173 52.0
Cfa004160 Carpinus fangiana HOM05D006799 ORTHO05D008391 8.7e-41 171.0 162 55.6
Zm00001eb086040 Zea mays HOM05D006799 ORTHO05D008391 4.3e-40 168.7 157 58.0
vmacro14734 Vaccinium macrocarpon HOM05D006799 ORTHO05D008391 9.6e-40 167.5 221 45.2
Psat4g203520 Pisum sativum HOM05D006799 ORTHO05D008391 3.7e-39 165.6 192 50.0
Lalb_Chr12g0209871 Lupinus albus HOM05D006799 ORTHO05D008391 4.8e-39 165.2 195 48.2
VMungo0331G1591 Vigna mungo HOM05D006799 ORTHO05D008391 1.1e-38 164.1 172 53.5
Lj3g0009647 Lotus japonicus HOM05D006799 ORTHO05D008391 5.3e-38 161.8 186 49.5
PSO063G5306 Papaver somniferum HOM05D006799 ORTHO05D008391 9.0e-38 161.0 169 50.9
Glyma.17G151300 Glycine max HOM05D006799 ORTHO05D008391 1.2e-37 160.6 189 48.1
TPR.G11194 Trifolium pratense HOM05D006799 ORTHO05D008391 1.2e-37 160.6 164 52.4
Ah.12g052960 Amaranthus hybridus HOM05D006799 ORTHO05D008391 4.5e-37 158.7 178 47.2
Medtr8g012725 Medicago truncatula HOM05D006799 ORTHO05D008391 1.3e-36 157.1 164 53.0
Phvul.010G021800 Phaseolus vulgaris HOM05D006799 ORTHO05D008391 1.7e-36 156.8 174 48.9
Lsat_1_v5_gn_8_89340 Lactuca sativa HOM05D006799 ORTHO05D008391 4.9e-36 155.2 156 52.6
ECA236G1739 Erigeron canadensis HOM05D006799 ORTHO05D008391 8.4e-36 154.5 157 52.2
Ca_23225_v3 Cicer arietinum L. HOM05D006799 ORTHO05D008391 7.9e-34 147.9 154 51.3
ATR0561G177 Amborella trichopoda HOM05D006799 ORTHO05D008391 6.7e-33 144.8 175 45.1
HanXRQChr16g0500591 Helianthus annuus HOM05D006799 ORTHO05D008391 1.5e-32 143.7 156 48.7
Peaxi162Scf00372g01214 Petunia axillaris HOM05D006799 ORTHO05D008391 1.1e-27 127.5 118 56.8
SEGI_12663 Sequoiadendron giganteum HOM05D006799 ORTHO05D008391 1.0e-25 120.9 190 40.5
Sc17g0002130 Simmondsia chinensis HOM05D006799 ORTHO05D008391 1.1e-24 117.5 97 63.9
FAN27G1455 Fragaria x ananassa HOM05D006799 ORTHO05D008391 3.3e-24 115.9 124 51.6
arahy.Tifrunner.gnm1.ann1.9RT6YB Arachis hypogaea HOM05D006799 ORTHO05D008391 5.0e-20 102.1 114 51.8
Mapoly0010s0131 Marchantia polymorpha HOM05D006799 ORTHO05D008391 2.7e-18 96.3 140 39.3
AagrBONN_evm.TU.Sc2ySwM_228.181 Anthoceros agrestis HOM05D006799 ORTHO05D008391 2.2e-15 86.7 172 34.9
Pp3c22_13870 Physcomitrium patens HOM05D006799 ORTHO05D008391 8.2e-15 84.7 173 34.1
Rhsim01G0253100 Rhododendron simsii HOM05D006799 ORTHO05D008391 1.3e-12 77.4 96 44.8
CBR_g52029 Chara braunii HOM05D006799 ORTHO05D008391 5.0e-12 75.5 104 43.3
SMO337G0092 Selaginella moellendorffii HOM05D006799 ORTHO05D008391 1.4e-06 57.4 106 36.8


User provided reference genes

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