Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G25013 Arabidopsis thaliana HOM05D032740 ORTHO05D031385 6.4e-48 193.7 97 100.0
AL3G40690 Arabidopsis lyrata HOM05D032740 ORTHO05D031385 1.8e-10 69.3 37 89.2
AagrBONN_evm.TU.Sc2ySwM_362.1588 Anthoceros agrestis HOM05D000407 ORTHO05D000558 9.3e-07 57.0 59 50.8
EL10Ac4g09437 Beta vulgaris HOM05D000407 ORTHO05D000558 1.6e-06 56.2 57 57.9
Haze_11581 Corylus avellana HOM05D000407 ORTHO05D000558 1.6e-06 56.2 57 57.9
DCAR_003793 Daucus carota HOM05D000407 ORTHO05D000558 1.6e-06 56.2 57 56.1
SMO301G0009 Selaginella moellendorffii HOM05D000407 ORTHO05D000558 1.6e-06 56.2 59 50.8
TWI09G0170 Tripterygium wilfordii HOM05D000407 ORTHO05D000558 1.6e-06 56.2 57 57.9
TWI53G0231 Tripterygium wilfordii HOM05D000407 ORTHO05D000558 1.6e-06 56.2 57 57.9
Zm00001eb061310 Zea mays HOM05D000407 ORTHO05D000558 1.6e-06 56.2 57 57.9
Zm00001eb212690 Zea mays HOM05D000407 ORTHO05D000558 1.6e-06 56.2 57 57.9
Zm00001eb302680 Zea mays HOM05D000407 ORTHO05D000558 1.6e-06 56.2 57 57.9
Dinv29571 Davidia involucrata HOM05D000407 ORTHO05D000558 2.1e-06 55.8 57 57.9
Glyma.08G355600 Glycine max HOM05D000407 ORTHO05D000558 2.1e-06 55.8 57 57.9
Glyma.18G172300 Glycine max HOM05D000407 ORTHO05D000558 2.1e-06 55.8 57 57.9
Lalb_Chr01g0022401 Lupinus albus HOM05D000407 ORTHO05D000558 2.1e-06 55.8 57 57.9
Phvul.008G123800 Phaseolus vulgaris HOM05D000407 ORTHO05D000558 2.1e-06 55.8 57 57.9
Pp3c12_11090 Physcomitrium patens HOM05D000407 ORTHO05D000558 2.1e-06 55.8 53 56.6
TPR.G15280 Trifolium pratense HOM05D000407 ORTHO05D000558 2.1e-06 55.8 55 58.2
MELO3C006328.2 Cucumis melo HOM05D000407 ORTHO05D000558 2.7e-06 55.5 57 56.1
Migut.N02262 Erythranthe guttata HOM05D000407 ORTHO05D000558 2.7e-06 55.5 57 54.4
FvH4_2g19280 Fragaria vesca HOM05D000407 ORTHO05D000558 2.7e-06 55.5 57 56.1
FAN24G3470 Fragaria x ananassa HOM05D000407 ORTHO05D000558 2.7e-06 55.5 57 56.1
Hma1.2p1_0691F.1_g204110 Hydrangea macrophylla HOM05D000407 ORTHO05D000558 2.7e-06 55.5 57 56.1
Lalb_Chr03g0041861 Lupinus albus HOM05D000407 ORTHO05D000558 2.7e-06 55.5 57 56.1
Manes.12G042550 Manihot esculenta HOM05D000407 ORTHO05D000558 2.7e-06 55.5 57 56.1
Medtr7g058900 Medicago truncatula HOM05D000407 ORTHO05D000558 2.7e-06 55.5 57 57.9
Thecc.04G208300 Theobroma cacao HOM05D000407 ORTHO05D000558 2.7e-06 55.5 57 56.1
Actinidia23730 Actinidia chinensis HOM05D000407 ORTHO05D000558 3.6e-06 55.1 57 54.4
CSS0035727 Camellia sinensis var. sinensis HOM05D000407 ORTHO05D000558 3.6e-06 55.1 57 56.1
CiPaw.02G067500 Carya illinoinensis HOM05D000407 ORTHO05D000558 3.6e-06 55.1 57 56.1
Ciclev10022162m.g Citrus clementina HOM05D000407 ORTHO05D000558 3.6e-06 55.1 57 56.1
CsaV3_3G011160 Cucumis sativus L. HOM05D000407 ORTHO05D000558 3.6e-06 55.1 57 54.4
Dinv38260 Davidia involucrata HOM05D000407 ORTHO05D000558 3.6e-06 55.1 57 56.1
FAN15G2614 Fragaria x ananassa HOM05D000407 ORTHO05D000558 3.6e-06 55.1 57 56.1
FAN27G1582 Fragaria x ananassa HOM05D000407 ORTHO05D000558 3.6e-06 55.1 57 56.1
Os03g0803000 Oryza sativa ssp. japonica HOM05D000407 ORTHO05D000558 3.6e-06 55.1 57 56.1
CiPaw.04G106300 Carya illinoinensis HOM05D000407 ORTHO05D000558 4.6e-06 54.7 57 54.4
Dinv19214 Davidia involucrata HOM05D000407 ORTHO05D000558 4.6e-06 54.7 57 54.4
Lalb_Chr18g0057731 Lupinus albus HOM05D000407 ORTHO05D000558 4.6e-06 54.7 57 56.1
Pp3c4_13580 Physcomitrium patens HOM05D000407 ORTHO05D000558 4.6e-06 54.7 53 54.7
Psat3g144200 Pisum sativum HOM05D000407 ORTHO05D000558 4.6e-06 54.7 55 58.2
AT2G32670 Arabidopsis thaliana HOM05D000407 ORTHO05D000558 6.1e-06 54.3 57 54.4
Hma1.2p1_0319F.1_g123780 Hydrangea macrophylla HOM05D000407 ORTHO05D000558 6.1e-06 54.3 57 54.4
GSVIVG01012100001 Vitis vinifera HOM05D000407 ORTHO05D000558 6.1e-06 54.3 57 54.4
Atru.chr10.608 Acer truncatum HOM05D000407 ORTHO05D000558 7.9e-06 53.9 57 54.4
Ah.04g158710 Amaranthus hybridus HOM05D000407 ORTHO05D000558 7.9e-06 53.9 57 56.1
Ah.06g195860 Amaranthus hybridus HOM05D000407 ORTHO05D000558 7.9e-06 53.9 57 56.1
Cfa000726 Carpinus fangiana HOM05D000407 ORTHO05D000558 7.9e-06 53.9 57 52.6
Cfa002559 Carpinus fangiana HOM05D000407 ORTHO05D000558 7.9e-06 53.9 57 56.1
AUR62000374 Chenopodium quinoa HOM05D000407 ORTHO05D000558 7.9e-06 53.9 57 56.1
AUR62006729 Chenopodium quinoa HOM05D000407 ORTHO05D000558 7.9e-06 53.9 57 56.1
Ciclev10005852m.g Citrus clementina HOM05D000407 ORTHO05D000558 7.9e-06 53.9 57 56.1
DCAR_012634 Daucus carota HOM05D000407 ORTHO05D000558 7.9e-06 53.9 57 54.4
Dinv11872 Davidia involucrata HOM05D000407 ORTHO05D000558 7.9e-06 53.9 57 52.6
MBI07_g00287_MAGBIO Magnolia biondii HOM05D000407 ORTHO05D000558 7.9e-06 53.9 57 56.1
Manes.03G149500 Manihot esculenta HOM05D000407 ORTHO05D000558 7.9e-06 53.9 57 56.1
Os07g0194000 Oryza sativa ssp. japonica HOM05D000407 ORTHO05D000558 7.9e-06 53.9 57 56.1
PGR142G2453 Punica granatum HOM05D000407 ORTHO05D000558 7.9e-06 53.9 57 56.1
QL06p023684 Quercus lobata HOM05D000407 ORTHO05D000558 7.9e-06 53.9 57 56.1
Sabra01G0035300 Salix brachista HOM05D000407 ORTHO05D000558 7.9e-06 53.9 57 56.1
Sp4g15000 Schrenkiella parvula HOM05D000407 ORTHO05D000558 7.9e-06 53.9 57 52.6
Hund07319 Selenicereus undatus HOM05D000407 ORTHO05D000558 7.9e-06 53.9 57 56.1
Hund21871 Selenicereus undatus HOM05D000407 ORTHO05D000558 7.9e-06 53.9 57 56.1
Sc16g0010180 Simmondsia chinensis HOM05D000407 ORTHO05D000558 7.9e-06 53.9 57 56.1
GSVIVG01000524001 Vitis vinifera HOM05D000407 ORTHO05D000558 7.9e-06 53.9 57 56.1


User provided reference genes

Program Settings