Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G24690 Arabidopsis thaliana HOM05D003373 ORTHO05D013173 2.2e-66 255.8 159 100.0
AL3G40300 Arabidopsis lyrata HOM05D003373 ORTHO05D013173 2.4e-52 209.1 159 79.2
C03p36240 Brassica napus HOM05D003373 ORTHO05D013173 1.3e-37 160.2 160 64.4
BolC3t15933H Brassica oleracea HOM05D003373 ORTHO05D013173 1.3e-37 160.2 160 64.4
A03p29950 Brassica napus HOM05D003373 ORTHO05D013173 1.6e-35 153.3 159 61.6
BraA03t12184Z Brassica rapa HOM05D003373 ORTHO05D013173 3.9e-34 148.7 160 60.0
BcaB01g01800 Brassica carinata HOM05D003373 ORTHO05D013173 1.8e-31 139.8 160 57.5
A09p26380 Brassica napus HOM05D003373 ORTHO05D013173 1.9e-28 129.8 162 56.2
BraA09t38212Z Brassica rapa HOM05D003373 ORTHO05D013173 1.9e-28 129.8 162 56.2
BcaC04g21286 Brassica carinata HOM05D003373 ORTHO05D013173 8.6e-26 120.9 162 53.7
C09p33540 Brassica napus HOM05D003373 ORTHO05D013173 3.3e-25 119.0 162 53.7
BolC9t56189H Brassica oleracea HOM05D003373 ORTHO05D013173 3.3e-25 119.0 162 53.7
AT1G27090 Arabidopsis thaliana HOM05D003373 ORTHO05D004419 9.6e-17 90.9 64 75.0
Thhalv10007745m.g Eutrema salsugineum HOM05D003373 ORTHO05D004419 1.3e-16 90.5 64 75.0
Thhalv10029189m.g Eutrema salsugineum HOM05D003373 ORTHO05D013173 1.3e-16 90.5 69 73.9
Gohir.D04G137300 Gossypium hirsutum HOM05D003373 ORTHO05D004419 2.1e-16 89.7 61 77.0
AL1G38400 Arabidopsis lyrata HOM05D003373 ORTHO05D004419 2.8e-16 89.4 64 73.4
Duzib248G1211 Durio zibethinus HOM05D003373 ORTHO05D004419 2.8e-16 89.4 65 72.3
Duzib268G0991 Durio zibethinus HOM05D003373 ORTHO05D004419 2.8e-16 89.4 62 74.2
EL10Ac6g13134 Beta vulgaris HOM05D003373 ORTHO05D004419 3.6e-16 89.0 65 70.8
Ciclev10031519m.g Citrus clementina HOM05D003373 ORTHO05D004419 3.6e-16 89.0 62 72.6
Gorai.012G121700 Gossypium raimondii HOM05D003373 ORTHO05D004419 4.8e-16 88.6 61 75.4
Thecc.02G234000 Theobroma cacao HOM05D003373 ORTHO05D004419 6.2e-16 88.2 62 75.8
Zm00001eb053410 Zea mays HOM05D003373 ORTHO05D004419 6.2e-16 88.2 64 67.2
Gohir.A04G097600 Gossypium hirsutum HOM05D003373 ORTHO05D004419 8.1e-16 87.8 62 74.2
Carub.0001s2388 Capsella rubella HOM05D003373 ORTHO05D004419 1.4e-15 87.0 64 71.9
Gohir.A05G320900 Gossypium hirsutum HOM05D003373 ORTHO05D004419 1.4e-15 87.0 62 72.6
Gohir.D05G323100 Gossypium hirsutum HOM05D003373 ORTHO05D004419 1.4e-15 87.0 62 72.6
Gorai.009G346800 Gossypium raimondii HOM05D003373 ORTHO05D004419 1.4e-15 87.0 62 72.6
BcaB03g11980 Brassica carinata HOM05D003373 ORTHO05D004419 1.8e-15 86.7 64 71.9
A08p27730 Brassica napus HOM05D003373 ORTHO05D004419 1.8e-15 86.7 64 73.4
Duzib251G0793 Durio zibethinus HOM05D003373 ORTHO05D004419 1.8e-15 86.7 62 74.2
Zm00001eb217180 Zea mays HOM05D003373 ORTHO05D004419 1.8e-15 86.7 64 65.6
Nitab4.5_0000710g0020 Nicotiana tabacum HOM05D003373 ORTHO05D004419 3.1e-15 85.9 62 72.6
Nitab4.5_0003297g0010 Nicotiana tabacum HOM05D003373 ORTHO05D004419 3.1e-15 85.9 62 72.6
BcaC05g26344 Brassica carinata HOM05D003373 ORTHO05D004419 4.0e-15 85.5 64 71.9
C05p23700 Brassica napus HOM05D003373 ORTHO05D004419 4.0e-15 85.5 64 71.9
BolC5t31088H Brassica oleracea HOM05D003373 ORTHO05D004419 4.0e-15 85.5 64 71.9
AUR62026466 Chenopodium quinoa HOM05D003373 ORTHO05D004419 4.0e-15 85.5 65 67.7
A09p40480 Brassica napus HOM05D003373 ORTHO05D004419 5.3e-15 85.1 64 71.9
BraA09t39545Z Brassica rapa HOM05D003373 ORTHO05D006520 5.3e-15 85.1 64 71.9
BraA08t34708Z Brassica rapa HOM05D003373 ORTHO05D004419 6.9e-15 84.7 64 71.9
COL.COLO4_36201 Corchorus olitorius HOM05D003373 ORTHO05D004419 6.9e-15 84.7 62 69.4
THA.LOC104822090 Tarenaya hassleriana HOM05D003373 ORTHO05D004419 6.9e-15 84.7 64 68.8
BcaC07g39253 Brassica carinata HOM05D003373 ORTHO05D004419 1.2e-14 84.0 64 71.9
AUR62026278 Chenopodium quinoa HOM05D003373 ORTHO05D004419 1.2e-14 84.0 65 64.6
BcaB07g32385 Brassica carinata HOM05D003373 ORTHO05D004419 1.5e-14 83.6 64 70.3
Lj2g0024788 Lotus japonicus HOM05D003373 ORTHO05D004419 2.0e-14 83.2 65 70.8
vmacro16318 Vaccinium macrocarpon HOM05D003373 ORTHO05D004419 2.0e-14 83.2 64 67.2
MELO3C012054.2 Cucumis melo HOM05D003373 ORTHO05D004419 2.6e-14 82.8 117 44.4
Glyma.01G041300 Glycine max HOM05D003373 ORTHO05D004419 2.6e-14 82.8 65 67.7
Nn3g17111 Nelumbo nucifera HOM05D003373 ORTHO05D004419 2.6e-14 82.8 62 67.7
Sabra08G0147700 Salix brachista HOM05D003373 ORTHO05D004419 2.6e-14 82.8 62 72.6
TAR622G0593 Trochodendron aralioides HOM05D003373 ORTHO05D004419 2.6e-14 82.8 64 67.2
BolC8t49893H Brassica oleracea HOM05D003373 ORTHO05D004419 3.4e-14 82.4 64 70.3
Cpa.g.sc5.285 Carica papaya HOM05D003373 ORTHO05D004419 3.4e-14 82.4 62 69.4
Lj3A1043T79 Lonicera japonica HOM05D003373 ORTHO05D004419 3.4e-14 82.4 63 65.1
MBI01_g01238_MAGBIO Magnolia biondii HOM05D003373 ORTHO05D004419 3.4e-14 82.4 62 67.7
Actinidia31168 Actinidia chinensis HOM05D003373 ORTHO05D004419 4.4e-14 82.0 62 69.4
ClCG05G024690 Citrullus lanatus HOM05D003373 ORTHO05D004419 4.4e-14 82.0 62 67.7
Psat2g126240 Pisum sativum HOM05D003373 ORTHO05D004419 4.4e-14 82.0 62 71.0
Potri.008G194200 Populus trichocarpa HOM05D003373 ORTHO05D004419 4.4e-14 82.0 62 69.4
Potri.010G034900 Populus trichocarpa HOM05D003373 ORTHO05D004419 4.4e-14 82.0 62 69.4
QL03p066330 Quercus lobata HOM05D003373 ORTHO05D004419 4.4e-14 82.0 62 71.0
Atru.chr11.1870 Acer truncatum HOM05D003373 ORTHO05D004419 5.8e-14 81.6 62 64.5
Actinidia04028 Actinidia chinensis HOM05D003373 ORTHO05D004419 5.8e-14 81.6 62 69.4
Cc11_g13620 Coffea canephora HOM05D003373 ORTHO05D004419 5.8e-14 81.6 64 67.2
Sp1g21690 Schrenkiella parvula HOM05D003373 ORTHO05D004419 5.8e-14 81.6 126 45.2
unitig_52.g17172 Utricularia gibba HOM05D003373 ORTHO05D004419 5.8e-14 81.6 63 69.8
CiPaw.05G141000 Carya illinoinensis HOM05D003373 ORTHO05D004419 7.6e-14 81.3 62 67.7
Manes.05G095400 Manihot esculenta HOM05D003373 ORTHO05D004419 7.6e-14 81.3 133 44.4
PGR102G0330 Punica granatum HOM05D003373 ORTHO05D004419 7.6e-14 81.3 62 66.1
CARHR024810 Cardamine hirsuta HOM05D003373 ORTHO05D004419 9.9e-14 80.9 64 67.2
Dinv34191 Davidia involucrata HOM05D003373 ORTHO05D004419 9.9e-14 80.9 64 65.6
TWI18G0023 Tripterygium wilfordii HOM05D003373 ORTHO05D004419 9.9e-14 80.9 62 64.5
Cfa009067 Carpinus fangiana HOM05D003373 ORTHO05D004419 1.3e-13 80.5 62 62.9
Dinv24947 Davidia involucrata HOM05D003373 ORTHO05D004419 1.3e-13 80.5 62 64.5
Hma1.2p1_1045F.1_g251400 Hydrangea macrophylla HOM05D003373 ORTHO05D004419 1.3e-13 80.5 62 66.1
Sabra10G0029900 Salix brachista HOM05D003373 ORTHO05D004419 1.3e-13 80.5 62 67.7
Solyc05g006900.2 Solanum lycopersicum HOM05D003373 ORTHO05D004419 1.3e-13 80.5 62 67.7
Sopen05g002860 Solanum pennellii HOM05D003373 ORTHO05D004419 1.3e-13 80.5 62 67.7
TWI36G0800 Tripterygium wilfordii HOM05D003373 ORTHO05D004419 1.3e-13 80.5 63 63.5
Ah.02g131980 Amaranthus hybridus HOM05D003373 ORTHO05D004419 1.7e-13 80.1 62 67.7
Aa31LG4G10950 Aethionema arabicum HOM05D003373 ORTHO05D004419 2.2e-13 79.7 64 64.1
Nitab4.5_0008971g0050 Nicotiana tabacum HOM05D003373 ORTHO05D004419 2.2e-13 79.7 62 67.7
HPP92_019601 Vanilla planifolia HOM05D003373 ORTHO05D004419 2.2e-13 79.7 65 64.6
HPP92_019651 Vanilla planifolia HOM05D003373 ORTHO05D004419 2.2e-13 79.7 65 64.6
CANSAT35G1086 Cannabis sativa HOM05D003373 ORTHO05D004419 2.9e-13 79.3 62 66.1
Haze_12097 Corylus avellana HOM05D003373 ORTHO05D004419 2.9e-13 79.3 62 62.9
Lj6A795T73 Lonicera japonica HOM05D003373 ORTHO05D004419 2.9e-13 79.3 62 61.3
CDE09G0772 Ceratophyllum demersum HOM05D003373 ORTHO05D004419 3.8e-13 79.0 62 64.5
Migut.L01354 Erythranthe guttata HOM05D003373 ORTHO05D004419 3.8e-13 79.0 62 71.0
Eucgr.B02587 Eucalyptus grandis HOM05D003373 ORTHO05D004419 3.8e-13 79.0 62 67.7
PSO017G0861 Papaver somniferum HOM05D003373 ORTHO05D004419 3.8e-13 79.0 62 66.1
PSO478G2017 Papaver somniferum HOM05D003373 ORTHO05D004419 3.8e-13 79.0 62 66.1
Sc11g0001580 Simmondsia chinensis HOM05D003373 ORTHO05D004419 3.8e-13 79.0 62 67.7
Aqoxy3G03242 Aquilegia oxysepala HOM05D003373 ORTHO05D004419 4.9e-13 78.6 71 63.4
Glyma.02G022800 Glycine max HOM05D003373 ORTHO05D004419 4.9e-13 78.6 65 66.2
Lalb_Chr04g0256431 Lupinus albus HOM05D003373 ORTHO05D004419 4.9e-13 78.6 62 67.7
Hund25279 Selenicereus undatus HOM05D003373 ORTHO05D004419 4.9e-13 78.6 62 66.1
SGA_v2.0_scaffold63G21675 Striga asiatica HOM05D003373 ORTHO05D004419 4.9e-13 78.6 65 69.2
SGA_v2.0_scaffold87G26974 Striga asiatica HOM05D003373 ORTHO05D004419 4.9e-13 78.6 64 65.6
arahy.Tifrunner.gnm1.ann1.NIK4ZB Arachis hypogaea HOM05D003373 ORTHO05D004419 6.4e-13 78.2 62 64.5
MSTRG.13397 Avicennia marina HOM05D003373 ORTHO05D004419 6.4e-13 78.2 62 69.4
CsaV3_5G032210 Cucumis sativus L. HOM05D003373 ORTHO05D004419 6.4e-13 78.2 134 41.0
RcHm_v2.0_Chr4g0445281 Rosa chinensis HOM05D003373 ORTHO05D004419 6.4e-13 78.2 62 64.5
VMungo1215G0200 Vigna mungo HOM05D003373 ORTHO05D004419 6.4e-13 78.2 62 64.5
MSTRG.2363 Avicennia marina HOM05D003373 ORTHO05D004419 8.4e-13 77.8 115 46.1
Lalb_Chr10g0097901 Lupinus albus HOM05D003373 ORTHO05D004419 8.4e-13 77.8 62 67.7
Nn4g23016 Nelumbo nucifera HOM05D003373 ORTHO05D004419 8.4e-13 77.8 131 42.0
PSO832G2541 Papaver somniferum HOM05D003373 ORTHO05D004419 8.4e-13 77.8 64 64.1
Peaxi162Scf00209g00714 Petunia axillaris HOM05D003373 ORTHO05D004419 8.4e-13 77.8 62 64.5
TPR.G31079 Trifolium pratense HOM05D003373 ORTHO05D004419 8.4e-13 77.8 62 67.7
TAR374G1081 Trochodendron aralioides HOM05D003373 ORTHO05D004419 8.4e-13 77.8 62 66.1
arahy.Tifrunner.gnm1.ann1.YF4WKN Arachis hypogaea HOM05D003373 ORTHO05D004419 1.1e-12 77.4 62 64.5
Ca_04701_v3 Cicer arietinum L. HOM05D003373 ORTHO05D004419 1.1e-12 77.4 62 69.4
Nitab4.5_0002382g0020 Nicotiana tabacum HOM05D003373 ORTHO05D004419 1.1e-12 77.4 62 66.1
DCAR_007126 Daucus carota HOM05D003373 ORTHO05D004419 1.4e-12 77.0 62 64.5
Oeu043029.1 Olea europaea HOM05D003373 ORTHO05D004419 1.4e-12 77.0 59 71.2
Sed0023513 Sechium edule HOM05D003373 ORTHO05D004419 1.4e-12 77.0 62 64.5
Haze_17060 Corylus avellana HOM05D003373 ORTHO05D004419 1.9e-12 76.6 62 61.3
Migut.E00120 Erythranthe guttata HOM05D003373 ORTHO05D004419 1.9e-12 76.6 64 67.2
Manes.01G192000 Manihot esculenta HOM05D003373 ORTHO05D004419 1.9e-12 76.6 135 42.2
Phvul.002G067800 Phaseolus vulgaris HOM05D003373 ORTHO05D004419 2.4e-12 76.3 62 64.5
unitig_62.g23682 Utricularia gibba HOM05D003373 ORTHO05D004419 2.4e-12 76.3 63 65.1
MD13G1080700 Malus domestica HOM05D003373 ORTHO05D004419 3.2e-12 75.9 62 64.5
Os03g0688200 Oryza sativa ssp. japonica HOM05D003373 ORTHO05D004419 3.2e-12 75.9 64 60.9
PSO591G0008 Papaver somniferum HOM05D003373 ORTHO05D004419 3.2e-12 75.9 62 64.5
TAR629G0400 Trochodendron aralioides HOM05D003373 ORTHO05D004419 3.2e-12 75.9 62 62.9
PGR119G0099 Punica granatum HOM05D003373 ORTHO05D004419 5.4e-12 75.1 62 62.9
Solyc01g010440.4 Solanum lycopersicum HOM05D003373 ORTHO05D004419 5.4e-12 75.1 62 64.5
Sopen01g006060 Solanum pennellii HOM05D003373 ORTHO05D004419 5.4e-12 75.1 62 64.5
PGSC0003DMG400007711 Solanum tuberosum HOM05D003373 ORTHO05D004419 5.4e-12 75.1 62 64.5
SalBow2G1107 Salvia bowleyana HOM05D003373 ORTHO05D004419 7.1e-12 74.7 64 59.4
ATR0665G354 Amborella trichopoda HOM05D003373 ORTHO05D004419 9.3e-12 74.3 62 61.3
PGSC0003DMG400010979 Solanum tuberosum HOM05D003373 ORTHO05D013173 9.3e-12 74.3 62 62.9
CSS0018229 Camellia sinensis var. sinensis HOM05D003373 ORTHO05D004419 1.2e-11 73.9 105 45.7
Medtr5g037960 Medicago truncatula HOM05D003373 ORTHO05D004419 1.2e-11 73.9 114 43.9
PGSC0003DMG400017635 Solanum tuberosum HOM05D003373 ORTHO05D004419 1.2e-11 73.9 62 62.9
MD16G1080200 Malus domestica HOM05D003373 ORTHO05D004419 1.6e-11 73.6 62 64.5
Oeu057174.1 Olea europaea HOM05D003373 ORTHO05D004419 1.6e-11 73.6 62 61.3
CDE08G0466 Ceratophyllum demersum HOM05D003373 ORTHO05D004419 2.1e-11 73.2 132 43.2
SGA_v2.0_scaffold467G52045 Striga asiatica HOM05D003373 ORTHO05D004419 2.1e-11 73.2 64 62.5
Lalb_Chr17g0340241 Lupinus albus HOM05D003373 ORTHO05D004419 3.5e-11 72.4 65 60.0
VMungo0540G1512 Vigna mungo HOM05D003373 ORTHO05D013173 3.5e-11 72.4 62 61.3
FAN07G0752 Fragaria x ananassa HOM05D003373 ORTHO05D004419 4.6e-11 72.0 62 61.3
Pp3c16_590 Physcomitrium patens HOM05D003373 ORTHO05D004419 4.6e-11 72.0 62 58.1
SEGI_31454 Sequoiadendron giganteum HOM05D003373 ORTHO05D004419 4.6e-11 72.0 62 59.7
Rhsim12G0129000 Rhododendron simsii HOM05D003373 ORTHO05D004419 6.0e-11 71.6 99 42.4
SalBow3G2377 Salvia bowleyana HOM05D003373 ORTHO05D004419 6.0e-11 71.6 64 64.1
GSVIVG01020088001 Vitis vinifera HOM05D003373 ORTHO05D004419 6.0e-11 71.6 55 65.5
FvH4_4g35680 Fragaria vesca HOM05D003373 ORTHO05D004419 1.0e-10 70.9 62 59.7
FAN22G0404 Fragaria x ananassa HOM05D003373 ORTHO05D004419 1.0e-10 70.9 62 59.7
FAN17G1936 Fragaria x ananassa HOM05D003373 ORTHO05D004419 1.3e-10 70.5 62 59.7
SGA_v2.0_scaffold166G38286 Striga asiatica HOM05D003373 ORTHO05D004419 1.7e-10 70.1 62 59.7
Lsat_1_v5_gn_4_9400 Lactuca sativa HOM05D003373 ORTHO05D004419 2.3e-10 69.7 64 56.2
FAN12G3521 Fragaria x ananassa HOM05D003373 ORTHO05D004419 3.0e-10 69.3 62 58.1
Mapoly0083s0034 Marchantia polymorpha HOM05D003373 ORTHO05D004419 3.9e-10 68.9 126 36.5
SEGI_00885 Sequoiadendron giganteum HOM05D003373 ORTHO05D004419 5.1e-10 68.6 62 59.7
Lsat_1_v5_gn_8_163340 Lactuca sativa HOM05D003373 ORTHO05D004419 6.6e-10 68.2 64 54.7
VMungo0464G1165 Vigna mungo HOM05D003373 ORTHO05D004419 8.7e-10 67.8 62 58.1
Pp3c25_8180 Physcomitrium patens HOM05D003373 ORTHO05D004419 2.5e-09 66.2 61 55.7
Pp3c25_8182 Physcomitrium patens HOM05D003373 ORTHO05D004419 2.5e-09 66.2 61 55.7
HanXRQChr17g0570411 Helianthus annuus HOM05D003373 ORTHO05D004419 3.3e-09 65.9 64 53.1
HanXRQChr03g0092821 Helianthus annuus HOM05D003373 ORTHO05D004419 7.3e-09 64.7 57 59.6
AagrBONN_evm.TU.Sc2ySwM_228.3903 Anthoceros agrestis HOM05D003373 ORTHO05D004419 9.6e-09 64.3 61 52.5
SMO012G0008 Selaginella moellendorffii HOM05D003373 ORTHO05D004419 2.1e-08 63.2 62 50.0
SMO141G0251 Selaginella moellendorffii HOM05D003373 ORTHO05D004419 2.1e-08 63.2 62 50.0
DCAR_031055 Daucus carota HOM05D003373 ORTHO05D004419 2.8e-08 62.8 62 54.8
CBR_g4061 Chara braunii HOM05D003373 ORTHO05D004419 6.2e-08 61.6 66 47.0
Lsat_1_v5_gn_8_36201 Lactuca sativa HOM05D003373 ORTHO05D004419 8.1e-08 61.2 64 50.0
ECA234G3640 Erigeron canadensis HOM05D003373 ORTHO05D004419 1.8e-07 60.1 64 53.1
CiPaw.06G080000 Carya illinoinensis HOM05D003373 ORTHO05D004419 3.4e-06 55.8 38 73.7
BcaB01g02599 Brassica carinata HOM05D003373 ORTHO05D013173 5.8e-06 55.1 60 61.7
SalBow8G0803 Salvia bowleyana HOM05D003373 ORTHO05D004419 9.9e-06 54.3 38 76.3


User provided reference genes

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