Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G24200 Arabidopsis thaliana HOM05D005505 ORTHO05D006974 4.2e-292 1007.3 506 100.0
Carub.0003s2430 Capsella rubella HOM05D005505 ORTHO05D006974 2.1e-267 925.2 507 91.9
CARHR099990 Cardamine hirsuta HOM05D005505 ORTHO05D006974 1.5e-265 919.1 506 90.9
A07p08370 Brassica napus HOM05D005505 ORTHO05D006974 3.2e-260 901.4 509 90.4
C09p75660 Brassica napus HOM05D005505 ORTHO05D006974 2.1e-259 898.7 508 90.4
BraA07t28623Z Brassica rapa HOM05D005505 ORTHO05D006974 4.7e-259 897.5 509 90.2
BcaC06g35602 Brassica carinata HOM05D005505 ORTHO05D006974 3.0e-258 894.8 509 90.0
C07p13070 Brassica napus HOM05D005505 ORTHO05D006974 4.0e-258 894.4 508 90.2
BolC7t41801H Brassica oleracea HOM05D005505 ORTHO05D006974 4.4e-257 891.0 508 89.8
BcaB06g26566 Brassica carinata HOM05D005505 ORTHO05D006974 5.7e-257 890.6 506 89.9
Thhalv10002522m.g Eutrema salsugineum HOM05D005505 ORTHO05D006974 2.4e-247 858.6 460 92.8
Aa31LG8G10580 Aethionema arabicum HOM05D005505 ORTHO05D006974 4.4e-241 837.8 512 83.6
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 5.6e-236 820.8 517 80.3
Sp3g21750 Schrenkiella parvula HOM05D005505 ORTHO05D006974 5.4e-223 777.7 435 89.0
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 6.6e-205 717.6 509 69.9
BcaC05g30344 Brassica carinata HOM05D005505 ORTHO05D007330 2.5e-204 715.7 508 76.0
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 1.3e-203 713.4 508 70.9
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 2.4e-202 709.1 509 69.4
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 3.1e-202 708.8 509 70.1
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 8.7e-197 690.6 511 68.7
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 3.7e-195 685.3 511 68.5
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.8e-194 682.9 508 68.1
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 2.4e-194 682.6 507 67.9
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 9.0e-194 680.6 509 66.2
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 2.0e-193 679.5 508 67.3
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 4.5e-193 678.3 509 66.4
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 2.9e-192 675.6 512 66.8
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 2.9e-192 675.6 508 68.5
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 4.9e-192 674.9 511 66.5
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 2.5e-191 672.5 516 65.9
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 4.6e-190 668.3 534 65.0
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.9e-189 665.2 512 66.4
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 1.5e-188 663.3 514 65.8
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 1.5e-188 663.3 512 66.2
SpUn0001_0240 Schrenkiella parvula HOM05D005505 ORTHO05D006974 4.3e-188 661.8 446 76.9
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 5.7e-188 661.4 511 66.9
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.3e-187 660.2 512 65.8
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 1.6e-187 659.8 512 65.2
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 6.2e-187 657.9 512 66.0
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 1.1e-186 657.1 512 65.4
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 2.4e-186 656.0 516 64.9
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 5.3e-186 654.8 520 65.2
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 9.0e-186 654.1 509 65.0
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 9.0e-186 654.1 508 65.2
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 1.5e-185 653.3 571 59.5
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 3.4e-185 652.1 471 68.2
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 5.8e-185 651.4 507 65.9
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 1.3e-184 650.2 493 67.1
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 3.8e-184 648.7 509 64.4
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 1.9e-183 646.4 509 64.6
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 5.5e-183 644.8 508 65.2
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 5.5e-183 644.8 508 64.4
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 2.1e-182 642.9 509 64.0
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 6.1e-182 641.3 505 64.8
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 7.9e-182 641.0 510 64.1
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 7.9e-182 641.0 524 62.8
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 2.3e-181 639.4 462 68.6
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 6.7e-181 637.9 510 64.3
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 8.7e-181 637.5 559 60.5
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 1.1e-180 637.1 516 63.8
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 2.5e-180 636.0 511 63.4
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 2.5e-180 636.0 514 63.8
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 3.3e-180 635.6 509 63.1
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 5.7e-180 634.8 508 64.4
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 9.7e-180 634.0 509 62.7
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 1.3e-179 633.6 510 64.1
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 2.2e-179 632.9 509 63.5
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 2.8e-179 632.5 511 63.6
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 4.8e-179 631.7 509 63.1
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 6.3e-179 631.3 510 63.7
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 8.2e-179 630.9 511 63.4
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 8.2e-179 630.9 509 64.0
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 1.1e-178 630.6 510 63.3
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 2.4e-178 629.4 486 64.2
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 6.9e-178 627.9 474 66.9
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 1.5e-177 626.7 469 65.5
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 2.6e-177 625.9 482 66.0
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 4.5e-177 625.2 508 63.4
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 5.9e-177 624.8 594 56.7
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 2.9e-176 622.5 473 66.6
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 2.9e-176 622.5 473 66.6
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 8.5e-176 620.9 513 62.4
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 9.4e-175 617.5 520 62.1
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 1.8e-173 613.2 507 61.5
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 2.3e-173 612.8 469 64.4
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 8.8e-173 610.9 509 62.3
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 9.7e-172 607.4 505 62.4
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 1.3e-171 607.1 459 66.9
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 4.8e-171 605.1 438 68.7
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 8.2e-171 604.4 509 61.3
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 8.2e-171 604.4 512 62.1
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 2.4e-170 602.8 512 61.7
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 1.5e-169 600.1 470 63.8
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 1.0e-168 597.4 457 66.3
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 1.3e-168 597.0 508 62.2
Medtr7g051960 Medicago truncatula HOM05D005505 ORTHO05D006974 1.3e-168 597.0 432 66.4
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 3.8e-168 595.5 497 62.2
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 4.2e-167 592.0 535 58.1
PGSC0003DMG400029626 Solanum tuberosum HOM05D005505 ORTHO05D006974 1.0e-165 587.4 435 67.1
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 3.7e-163 578.9 462 63.2
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 1.4e-162 577.0 466 61.8
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 5.3e-162 575.1 460 61.7
SpUn0001_0260 Schrenkiella parvula HOM05D005505 ORTHO05D006974 5.9e-161 571.6 507 62.3
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 1.1e-159 567.4 552 55.6
SHI00938 Sapria himalayana HOM05D005505 ORTHO05D006974 4.8e-155 552.0 454 59.7
MD14G1116500 Malus domestica HOM05D005505 ORTHO05D006974 8.5e-152 541.2 424 63.9
Lj3A578G8 Lonicera japonica HOM05D005505 ORTHO05D006974 6.5e-144 515.0 370 69.7
Haze_11578 Corylus avellana HOM05D005505 ORTHO05D006974 8.5e-144 514.6 356 70.2
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 1.2e-142 510.8 503 53.3
Lj3A579T16 Lonicera japonica HOM05D005505 ORTHO05D006974 5.7e-140 501.9 414 62.3
Dinv38263 Davidia involucrata HOM05D005505 ORTHO05D006974 3.0e-133 479.6 378 64.8
AL3G39020 Arabidopsis lyrata HOM05D005505 ORTHO05D006974 2.9e-123 446.4 238 93.3
CDE02G0375 Ceratophyllum demersum HOM05D005505 ORTHO05D006974 2.0e-121 440.3 388 59.3
Mapoly0028s0013 Marchantia polymorpha HOM05D005505 ORTHO05D006974 3.9e-120 436.0 506 47.4
Pp3c26_12110 Physcomitrium patens HOM05D005505 ORTHO05D006974 6.0e-113 412.1 495 45.5
SMO351G0576 Selaginella moellendorffii HOM05D005505 ORTHO05D006974 1.5e-111 407.5 448 49.1
Lj3A580T64 Lonicera japonica HOM05D005505 ORTHO05D006974 8.9e-109 398.3 390 56.4
arahy.Tifrunner.gnm1.ann1.NU2AG4 Arachis hypogaea HOM05D005505 ORTHO05D006974 1.4e-106 391.0 331 60.1
BolC5t35086H Brassica oleracea HOM05D005505 ORTHO05D006974 1.2e-100 371.3 221 87.3
Gohir.D09G197033 Gossypium hirsutum HOM05D005505 ORTHO05D006974 3.0e-96 356.7 286 62.9
Lj3A565G17 Lonicera japonica HOM05D005505 ORTHO05D006974 1.8e-93 347.4 327 57.5
MCO15G051 Micromonas commoda HOM05D005505 ORTHO05D006974 6.2e-78 295.8 475 38.5
CAN.G220.36 Capsicum annuum HOM05D005505 ORTHO05D006974 5.1e-72 276.2 681 32.2
Cre02.g112850 Chlamydomonas reinhardtii HOM05D005505 ORTHO05D006974 1.1e-71 275.0 460 37.8
HPP92_019865 Vanilla planifolia HOM05D005505 ORTHO05D006974 2.5e-63 247.3 500 36.0
PRCOL_00000308 Prasinoderma coloniale HOM05D005505 ORTHO05D006974 4.3e-63 246.5 376 40.7
Cfa022008 Carpinus fangiana HOM05D005505 ORTHO05D006974 1.4e-56 224.9 455 33.2
SpUn0242_NC2199 Schrenkiella parvula HOM05D005505 ORTHO05D006974 5.7e-47 193.0 102 95.1
Lj3A566G16 Lonicera japonica HOM05D005505 ORTHO05D006974 1.7e-46 191.4 156 63.5
CBR_g34015 Chara braunii HOM05D005505 ORTHO05D006974 3.0e-40 170.6 250 38.4
CBR_g34017 Chara braunii HOM05D005505 ORTHO05D006974 5.7e-39 166.4 206 43.2
Lj3A578G7 Lonicera japonica HOM05D005505 ORTHO05D006974 4.1e-29 133.7 108 63.0
Ca_29365_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 2.2e-22 111.3 344 26.5
Haze_11577 Corylus avellana HOM05D005505 ORTHO05D006974 8.3e-22 109.4 132 49.2
AL3G39220 Arabidopsis lyrata HOM05D005505 ORTHO05D000101 3.3e-18 97.4 48 89.6
Actinidia34626 Actinidia chinensis HOM05D005505 ORTHO05D006974 3.6e-17 94.0 106 49.1
CDE09G0201 Ceratophyllum demersum HOM05D000090 ORTHO05D001584 3.0e-11 74.3 48 72.9
Lj3A579T17 Lonicera japonica HOM05D005505 ORTHO05D006974 7.3e-10 69.7 57 63.2
Gorai.013G139000 Gossypium raimondii HOM05D000686 ORTHO05D000512 3.6e-09 67.4 418 22.5
Nitab4.5_0000925g0140 Nicotiana tabacum HOM05D000686 ORTHO05D000512 1.5e-07 62.0 409 22.2
Nitab4.5_0000031g0070 Nicotiana tabacum HOM05D000686 ORTHO05D000512 5.8e-07 60.1 279 25.4
Gohir.A13G122300 Gossypium hirsutum HOM05D000686 ORTHO05D000512 7.5e-07 59.7 417 21.3


User provided reference genes

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