Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G24160 Arabidopsis thaliana HOM05D002428 ORTHO05D005085 1.3e-194 682.9 365 100.0
AL3G39100 Arabidopsis lyrata HOM05D002428 ORTHO05D005085 2.8e-181 638.6 366 93.7
Carub.0003s2434 Capsella rubella HOM05D002428 ORTHO05D005085 4.1e-164 581.6 366 87.2
Thhalv10002585m.g Eutrema salsugineum HOM05D002428 ORTHO05D005085 1.1e-161 573.5 367 85.8
BcaB03g14602 Brassica carinata HOM05D002428 ORTHO05D005085 2.8e-160 568.9 367 84.5
CARHR100040 Cardamine hirsuta HOM05D002428 ORTHO05D005085 5.7e-158 561.2 367 83.7
A01p31110 Brassica napus HOM05D002428 ORTHO05D005085 1.0e-154 550.4 368 82.1
C01p39650 Brassica napus HOM05D002428 ORTHO05D005085 1.0e-154 550.4 367 82.0
BraA01t03235Z Brassica rapa HOM05D002428 ORTHO05D005085 1.0e-154 550.4 368 82.1
BolC1t03917H Brassica oleracea HOM05D002428 ORTHO05D005085 8.6e-154 547.4 367 81.7
A03p43460 Brassica napus HOM05D002428 ORTHO05D005085 1.9e-153 546.2 367 82.8
A07p08320 Brassica napus HOM05D002428 ORTHO05D005085 1.9e-153 546.2 368 82.3
BraA07t28615Z Brassica rapa HOM05D002428 ORTHO05D005085 1.9e-153 546.2 368 82.3
BraA03t13484Z Brassica rapa HOM05D002428 ORTHO05D005085 7.3e-153 544.3 367 82.6
Sp3g21770 Schrenkiella parvula HOM05D002428 ORTHO05D005085 9.5e-153 543.9 367 83.1
BolC7t41792H Brassica oleracea HOM05D002428 ORTHO05D005085 6.1e-152 541.2 367 81.5
BcaC06g35609 Brassica carinata HOM05D002428 ORTHO05D005085 8.9e-151 537.3 367 80.9
C07p12990 Brassica napus HOM05D002428 ORTHO05D005085 8.9e-151 537.3 367 80.9
BolC3t17603H Brassica oleracea HOM05D002428 ORTHO05D005085 3.7e-149 531.9 367 81.2
BcaC01g03347 Brassica carinata HOM05D002428 ORTHO05D005085 7.0e-148 527.7 368 81.0
C03p53420 Brassica napus HOM05D002428 ORTHO05D005085 7.8e-147 524.2 367 80.4
BcaB04g20405 Brassica carinata HOM05D002428 ORTHO05D005085 8.6e-146 520.8 367 79.0
BcaB06g26571 Brassica carinata HOM05D002428 ORTHO05D005085 1.5e-142 510.0 349 80.5
Aa31LG8G10690 Aethionema arabicum HOM05D002428 ORTHO05D005085 1.7e-130 469.9 334 77.8
THA.LOC104808717 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 4.8e-120 435.3 371 64.7
THA.LOC104804814 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 6.6e-114 414.8 374 61.5
Ciclev10005183m.g Citrus clementina HOM05D002428 ORTHO05D005085 1.8e-87 327.0 373 52.3
Manes.03G149000 Manihot esculenta HOM05D002428 ORTHO05D005085 2.4e-87 326.6 368 49.7
Duzib151G0814 Durio zibethinus HOM05D002428 ORTHO05D005085 1.2e-86 324.3 372 50.3
CSS0050051 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 1.5e-86 323.9 378 49.5
CSS0020338 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 4.5e-86 322.4 378 50.0
Atru.chr4.1736 Acer truncatum HOM05D002428 ORTHO05D005085 7.7e-86 321.6 370 50.8
MD04G1005200 Malus domestica HOM05D002428 ORTHO05D005085 1.9e-84 317.0 369 50.4
MD07G1287300 Malus domestica HOM05D002428 ORTHO05D005085 1.9e-84 317.0 369 50.4
Gohir.A10G122900 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.5e-84 316.6 372 50.3
MD04G1005300 Malus domestica HOM05D002428 ORTHO05D005085 3.2e-84 316.2 369 50.7
Gohir.D10G143200 Gossypium hirsutum HOM05D002428 ORTHO05D005085 4.2e-84 315.8 372 49.7
Gorai.011G160000 Gossypium raimondii HOM05D002428 ORTHO05D005085 4.2e-84 315.8 372 49.7
QL06p024041 Quercus lobata HOM05D002428 ORTHO05D005085 4.2e-84 315.8 368 50.8
Thecc.04G206400 Theobroma cacao HOM05D002428 ORTHO05D005085 1.2e-83 314.3 372 50.3
Potri.001G049800 Populus trichocarpa HOM05D002428 ORTHO05D005085 1.6e-83 313.9 365 50.7
Sabra01G0034700 Salix brachista HOM05D002428 ORTHO05D005085 2.7e-83 313.2 364 49.7
Gorai.006G221300 Gossypium raimondii HOM05D002428 ORTHO05D005085 6.1e-83 312.0 372 49.5
CANSAT78G0072 Cannabis sativa HOM05D002428 ORTHO05D005085 1.4e-82 310.8 366 48.6
Gohir.A09G204000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.8e-82 310.5 372 50.0
Gohir.D09G197800 Gossypium hirsutum HOM05D002428 ORTHO05D005085 3.9e-82 309.3 372 49.5
Manes.15G052100 Manihot esculenta HOM05D002428 ORTHO05D005085 3.9e-82 309.3 323 52.9
Gohir.A02G023600 Gossypium hirsutum HOM05D002428 ORTHO05D005085 8.8e-82 308.1 371 47.7
Actinidia35873 Actinidia chinensis HOM05D002428 ORTHO05D005085 1.5e-81 307.4 380 49.5
Haze_11595 Corylus avellana HOM05D002428 ORTHO05D005085 1.5e-81 307.4 369 49.9
TAR362G0527 Trochodendron aralioides HOM05D002428 ORTHO05D005085 2.5e-81 306.6 375 48.0
RcHm_v2.0_Chr4g0385911 Rosa chinensis HOM05D002428 ORTHO05D005085 7.4e-81 305.1 367 49.6
Eucgr.H02858 Eucalyptus grandis HOM05D002428 ORTHO05D005085 3.7e-80 302.8 373 48.8
Prupe.1G005000 Prunus persica HOM05D002428 ORTHO05D005085 3.7e-80 302.8 368 49.7
GSVIVG01021082001 Vitis vinifera HOM05D002428 ORTHO05D005085 3.7e-80 302.8 374 47.6
FvH4_4g00480 Fragaria vesca HOM05D002428 ORTHO05D005085 2.4e-79 300.1 374 48.9
FAN12G1312 Fragaria x ananassa HOM05D002428 ORTHO05D005085 2.4e-79 300.1 374 48.9
Gorai.005G034400 Gossypium raimondii HOM05D002428 ORTHO05D005085 4.5e-78 295.8 371 46.6
Potri.003G178400 Populus trichocarpa HOM05D002428 ORTHO05D005085 1.0e-77 294.7 364 49.2
Lalb_Chr20g0120151 Lupinus albus HOM05D002428 ORTHO05D005085 1.7e-77 293.9 365 48.8
Nn1g07810 Nelumbo nucifera HOM05D002428 ORTHO05D005085 2.9e-77 293.1 374 46.3
Gohir.D02G031000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 3.8e-77 292.7 371 45.8
CiPaw.01G122700 Carya illinoinensis HOM05D002428 ORTHO05D005085 5.0e-77 292.4 370 47.0
PGR031G3462 Punica granatum HOM05D002428 ORTHO05D005085 6.5e-77 292.0 372 47.8
Lj6g0025937 Lotus japonicus HOM05D002428 ORTHO05D005085 1.9e-76 290.4 372 47.3
Dinv38249 Davidia involucrata HOM05D002428 ORTHO05D005085 3.2e-76 289.7 325 50.8
COL.COLO4_20262 Corchorus olitorius HOM05D002428 ORTHO05D005085 7.2e-76 288.5 322 53.1
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 2.7e-75 286.6 370 48.4
RcHm_v2.0_Chr4g0385791 Rosa chinensis HOM05D002428 ORTHO05D005085 2.7e-75 286.6 336 50.3
Lsat_1_v5_gn_6_59860 Lactuca sativa HOM05D002428 ORTHO05D005085 4.7e-75 285.8 352 46.0
Rhsim09G0054900 Rhododendron simsii HOM05D002428 ORTHO05D005085 4.7e-75 285.8 337 49.3
MSTRG.9822 Avicennia marina HOM05D002428 ORTHO05D005085 1.0e-74 284.6 366 46.7
Lalb_Chr18g0058061 Lupinus albus HOM05D002428 ORTHO05D005085 1.4e-74 284.3 364 47.3
Nn3g19943 Nelumbo nucifera HOM05D002428 ORTHO05D005085 1.4e-74 284.3 374 44.7
Glyma.09G025700 Glycine max HOM05D002428 ORTHO05D005085 1.8e-74 283.9 376 46.5
Glyma.15G131900 Glycine max HOM05D002428 ORTHO05D005085 1.8e-74 283.9 368 46.2
SalBow8G0494 Salvia bowleyana HOM05D002428 ORTHO05D005085 1.8e-74 283.9 366 46.2
TPR.G26368 Trifolium pratense HOM05D002428 ORTHO05D005085 3.9e-74 282.7 355 47.3
Medtr2g030560 Medicago truncatula HOM05D002428 ORTHO05D005085 2.6e-73 280.0 357 47.6
Aqoxy5G00065 Aquilegia oxysepala HOM05D002428 ORTHO05D005085 3.3e-73 279.6 377 43.5
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 9.7e-73 278.1 363 46.8
VMungo0540G1973 Vigna mungo HOM05D002428 ORTHO05D005085 8.2e-72 275.0 369 45.5
Ca_00857_v3 Cicer arietinum L. HOM05D002428 ORTHO05D005085 1.8e-71 273.9 351 47.3
FAN17G2111 Fragaria x ananassa HOM05D002428 ORTHO05D005085 3.1e-71 273.1 415 44.6
Phvul.006G126700 Phaseolus vulgaris HOM05D002428 ORTHO05D005085 4.1e-71 272.7 369 45.0
CAN.G500.14 Capsicum annuum HOM05D002428 ORTHO05D005085 5.9e-70 268.9 372 44.4
MBI10_g05704_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D005085 7.7e-70 268.5 375 42.4
Eucgr.G01177 Eucalyptus grandis HOM05D002428 ORTHO05D005085 1.7e-69 267.3 360 45.8
Cc03_g07640 Coffea canephora HOM05D002428 ORTHO05D005085 3.8e-69 266.2 373 42.9
Sopen09g034710 Solanum pennellii HOM05D002428 ORTHO05D005085 3.8e-69 266.2 374 43.3
Duzib212G0991 Durio zibethinus HOM05D002428 ORTHO05D005085 8.5e-69 265.0 371 45.3
Nitab4.5_0003750g0010 Nicotiana tabacum HOM05D002428 ORTHO05D005085 8.5e-69 265.0 376 44.1
HanXRQChr15g0484251 Helianthus annuus HOM05D002428 ORTHO05D005085 1.5e-68 264.2 367 42.5
Sc13g0000100 Simmondsia chinensis HOM05D002428 ORTHO05D005085 1.5e-68 264.2 363 44.4
SGA_v2.0_scaffold72G24051 Striga asiatica HOM05D002428 ORTHO05D005085 5.5e-68 262.3 347 45.5
PGSC0003DMG400029636 Solanum tuberosum HOM05D002428 ORTHO05D005085 7.2e-68 261.9 373 42.9
vmacro00484 Vaccinium macrocarpon HOM05D002428 ORTHO05D005085 4.7e-67 259.2 302 48.3
PSO170G6100 Papaver somniferum HOM05D002428 ORTHO05D005085 1.8e-66 257.3 373 43.7
Sabra03G0130800 Salix brachista HOM05D002428 ORTHO05D005085 2.3e-66 256.9 351 46.2
arahy.Tifrunner.gnm1.ann1.2WG9BE Arachis hypogaea HOM05D002428 ORTHO05D005085 8.8e-66 255.0 365 43.3
arahy.Tifrunner.gnm1.ann1.CV7WQS Arachis hypogaea HOM05D002428 ORTHO05D005085 1.1e-65 254.6 365 43.3
ClCG05G003400 Citrullus lanatus HOM05D002428 ORTHO05D005085 3.3e-65 253.1 368 44.0
Sed0008750 Sechium edule HOM05D002428 ORTHO05D005085 7.5e-65 251.9 370 45.1
EL10Ac3g07490 Beta vulgaris HOM05D002428 ORTHO05D005085 9.7e-65 251.5 370 43.8
Peaxi162Scf00047g00728 Petunia axillaris HOM05D002428 ORTHO05D005085 1.3e-64 251.1 368 42.9
Sed0022855 Sechium edule HOM05D002428 ORTHO05D005085 8.2e-64 248.4 370 43.0
Migut.G00669 Erythranthe guttata HOM05D002428 ORTHO05D005085 1.8e-63 247.3 347 44.4
unitig_26.g9776 Utricularia gibba HOM05D002428 ORTHO05D005085 1.2e-62 244.6 348 44.0
CsaV3_3G011070 Cucumis sativus L. HOM05D002428 ORTHO05D005085 2.0e-62 243.8 370 44.3
ECA238G3133 Erigeron canadensis HOM05D002428 ORTHO05D005085 3.5e-62 243.0 330 44.2
PSO674G0088 Papaver somniferum HOM05D002428 ORTHO05D005085 1.3e-61 241.1 393 40.7
DCAR_026601 Daucus carota HOM05D002428 ORTHO05D005085 1.5e-60 237.7 305 45.9
Nitab4.5_0004974g0030 Nicotiana tabacum HOM05D002428 ORTHO05D005085 2.7e-59 233.4 367 40.6
ATR0736G031 Amborella trichopoda HOM05D002428 ORTHO05D005085 8.0e-59 231.9 324 41.4
TAR633G2286 Trochodendron aralioides HOM05D002428 ORTHO05D005085 4.0e-58 229.6 373 42.6
Oeu018226.1 Olea europaea HOM05D002428 ORTHO05D005085 1.2e-57 228.0 350 40.0
Lsat_1_v5_gn_2_45560 Lactuca sativa HOM05D002428 ORTHO05D005085 2.6e-57 226.9 358 35.8
Zm00001eb038510 Zea mays HOM05D002428 ORTHO05D005085 2.2e-56 223.8 355 40.6
AUR62020812 Chenopodium quinoa HOM05D002428 ORTHO05D005085 2.8e-56 223.4 344 39.8
CDE09G0695 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 3.7e-56 223.0 369 38.8
Os08g0567000 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D005085 1.1e-55 221.5 347 42.4
Actinidia25627 Actinidia chinensis HOM05D002428 ORTHO05D005085 1.4e-55 221.1 328 44.8
Psat7g008880 Pisum sativum HOM05D002428 ORTHO05D005085 1.2e-54 218.0 333 42.9
CDE11G0336 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 1.3e-53 214.5 373 38.1
HPP92_020844 Vanilla planifolia HOM05D002428 ORTHO05D005085 9.4e-52 208.4 371 37.7
SEGI_17850 Sequoiadendron giganteum HOM05D002428 ORTHO05D005085 1.6e-51 207.6 330 38.8
Psat1g166480 Pisum sativum HOM05D002428 ORTHO05D005085 2.4e-47 193.7 279 44.1
AUR62032922 Chenopodium quinoa HOM05D002428 ORTHO05D005085 3.8e-45 186.4 277 40.4
MELO3C006320.2 Cucumis melo HOM05D002428 ORTHO05D005085 4.3e-44 183.0 281 42.0
Cpa.g.sc1744.1 Carica papaya HOM05D002428 ORTHO05D005085 2.8e-43 180.3 189 51.3
Cpa.g.sc59.124 Carica papaya HOM05D002428 ORTHO05D005085 5.4e-31 139.4 129 59.7
Lj3A543T20 Lonicera japonica HOM05D002428 ORTHO05D005085 7.3e-28 129.0 130 55.4
SMO367G0336 Selaginella moellendorffii HOM05D002428 ORTHO05D005085 7.3e-28 129.0 384 33.1
Mapoly0023s0054 Marchantia polymorpha HOM05D002428 ORTHO05D005085 1.5e-25 121.3 388 29.1
Gohir.D01G133000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 3.2e-23 113.6 136 42.6
Gorai.011G166500 Gossypium raimondii HOM05D002428 ORTHO05D005085 4.6e-22 109.8 138 39.9
Gorai.007G194000 Gossypium raimondii HOM05D002428 ORTHO05D005085 7.3e-20 102.4 125 42.4
Gohir.D07G140050 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.2e-19 101.7 130 41.5
CBR_g18980 Chara braunii HOM05D002428 ORTHO05D005085 2.8e-19 100.5 374 25.1
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 4.0e-18 96.7 157 40.1
Pp3c14_7560 Physcomitrium patens HOM05D002428 ORTHO05D005085 3.4e-17 93.6 360 25.0
Pp3c10_8060 Physcomitrium patens HOM05D002428 ORTHO05D005085 1.3e-16 91.7 377 25.5
Ah.01g001400 Amaranthus hybridus HOM05D002428 ORTHO05D005085 6.0e-14 82.8 198 31.8
Lalb_Chr15g0088821 Lupinus albus HOM05D002428 ORTHO05D005085 1.0e-13 82.0 100 42.0
Ah.01g001410 Amaranthus hybridus HOM05D002428 ORTHO05D005085 6.6e-13 79.3 262 27.9
Nitab4.5_0001063g0080 Nicotiana tabacum HOM05D002389 ORTHO05D005085 6.6e-13 79.3 242 26.9
PSO017G6711 Papaver somniferum HOM05D002428 ORTHO05D005085 1.6e-11 74.7 95 46.3
Nitab4.5_0000081g0050 Nicotiana tabacum HOM05D002428 ORTHO05D005085 4.7e-11 73.2 126 32.5
Rhsim09G0053800 Rhododendron simsii HOM05D002428 ORTHO05D005085 7.8e-06 55.8 83 42.2
Rhsim09G0054400 Rhododendron simsii HOM05D002428 ORTHO05D005085 7.8e-06 55.8 83 42.2


User provided reference genes

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