Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G24060 Arabidopsis thaliana HOM05D005430 ORTHO05D007814 3.9e-81 304.7 148 100.0
AL3G39310 Arabidopsis lyrata HOM05D005430 ORTHO05D007814 4.1e-78 294.7 148 96.6
Sp3g21900 Schrenkiella parvula HOM05D005430 ORTHO05D007814 7.2e-67 257.3 144 86.1
Thhalv10003022m.g Eutrema salsugineum HOM05D005430 ORTHO05D007814 5.2e-65 251.1 148 81.1
A01p31010 Brassica napus HOM05D005430 ORTHO05D007814 1.5e-64 249.6 144 82.6
BraA01t03227Z Brassica rapa HOM05D005430 ORTHO05D007814 1.5e-64 249.6 144 82.6
AL8G20530 Arabidopsis lyrata HOM05D005430 ORTHO05D007814 4.4e-64 248.1 127 90.6
BcaB04g20397 Brassica carinata HOM05D005430 ORTHO05D007814 1.3e-63 246.5 144 81.2
Carub.0003s2446 Capsella rubella HOM05D005430 ORTHO05D007814 8.2e-63 243.8 123 90.2
CARHR100160 Cardamine hirsuta HOM05D005430 ORTHO05D007814 2.2e-60 235.7 149 76.5
C01p39510 Brassica napus HOM05D005430 ORTHO05D007814 1.2e-56 223.4 134 79.9
BolC1t03901H Brassica oleracea HOM05D005430 ORTHO05D007814 3.3e-56 221.9 134 79.1
THA.LOC104821619 Tarenaya hassleriana HOM05D005430 ORTHO05D007814 7.7e-53 210.7 148 69.6
FAN17G1087 Fragaria x ananassa HOM05D005430 ORTHO05D007814 4.2e-43 178.3 141 60.3
RcHm_v2.0_Chr4g0396841 Rosa chinensis HOM05D005430 ORTHO05D007814 7.2e-43 177.6 140 58.6
Cpa.g.sc59.85 Carica papaya HOM05D005430 ORTHO05D007814 9.5e-43 177.2 147 59.9
Cfa014874 Carpinus fangiana HOM05D005430 ORTHO05D007814 9.5e-43 177.2 139 58.3
Duzib212G0862 Durio zibethinus HOM05D005430 ORTHO05D007814 9.5e-43 177.2 142 62.0
Potri.003G175200 Populus trichocarpa HOM05D005430 ORTHO05D007814 1.2e-42 176.8 142 59.2
FAN07G2372 Fragaria x ananassa HOM05D005430 ORTHO05D007814 1.6e-42 176.4 122 65.6
Sabra03G0128400 Salix brachista HOM05D005430 ORTHO05D007814 2.1e-42 176.0 139 59.0
FvH4_4g05670 Fragaria vesca HOM05D005430 ORTHO05D007814 3.6e-42 175.3 141 58.2
FAN22G2342 Fragaria x ananassa HOM05D005430 ORTHO05D007814 4.7e-42 174.9 122 64.8
Dinv38286 Davidia involucrata HOM05D005430 ORTHO05D007814 6.1e-42 174.5 116 66.4
Gohir.A10G120900 Gossypium hirsutum HOM05D005430 ORTHO05D007814 8.0e-42 174.1 142 62.7
Gohir.D10G145400 Gossypium hirsutum HOM05D005430 ORTHO05D007814 8.0e-42 174.1 142 62.7
Gorai.011G162600 Gossypium raimondii HOM05D005430 ORTHO05D007814 8.0e-42 174.1 142 62.7
Haze_11548 Corylus avellana HOM05D005430 ORTHO05D007814 1.0e-41 173.7 141 57.4
Thecc.04G212700 Theobroma cacao HOM05D005430 ORTHO05D007814 1.4e-41 173.3 142 60.6
Eucgr.H00103 Eucalyptus grandis HOM05D005430 ORTHO05D007814 1.8e-41 172.9 144 59.7
Prupe.1G058400 Prunus persica HOM05D005430 ORTHO05D007814 4.0e-41 171.8 140 57.1
Sed0023963 Sechium edule HOM05D005430 ORTHO05D007814 5.2e-41 171.4 142 59.9
Potri.001G053100 Populus trichocarpa HOM05D005430 ORTHO05D007814 6.8e-41 171.0 142 57.0
Atru.chr4.1803 Acer truncatum HOM05D005430 ORTHO05D007814 8.9e-41 170.6 149 57.0
FAN12G0934 Fragaria x ananassa HOM05D005430 ORTHO05D007814 8.9e-41 170.6 140 57.9
MD16G1234100 Malus domestica HOM05D005430 ORTHO05D007814 1.2e-40 170.2 142 56.3
Ciclev10006174m.g Citrus clementina HOM05D005430 ORTHO05D007814 2.0e-40 169.5 139 60.4
COL.COLO4_34091 Corchorus olitorius HOM05D005430 ORTHO05D007814 2.0e-40 169.5 120 65.0
CiPaw.01G204600 Carya illinoinensis HOM05D005430 ORTHO05D007814 2.6e-40 169.1 112 65.2
Manes.03G153100 Manihot esculenta HOM05D005430 ORTHO05D007814 3.4e-40 168.7 138 57.2
QL06p023021 Quercus lobata HOM05D005430 ORTHO05D007814 5.7e-40 167.9 122 62.3
QL12p006673 Quercus lobata HOM05D005430 ORTHO05D007814 5.7e-40 167.9 142 56.3
MD13G1228600 Malus domestica HOM05D005430 ORTHO05D007814 7.5e-40 167.5 140 55.7
MELO3C023093.2 Cucumis melo HOM05D005430 ORTHO05D007814 9.8e-40 167.2 140 59.3
Sabra01G0037500 Salix brachista HOM05D006492 ORTHO05D008432 1.7e-39 166.4 134 57.5
QL11p023894 Quercus lobata HOM05D005430 ORTHO05D007814 2.2e-39 166.0 122 61.5
CsaV3_2G012000 Cucumis sativus L. HOM05D005430 ORTHO05D007814 6.3e-39 164.5 120 62.5
Sed0027066 Sechium edule HOM05D005430 ORTHO05D007814 8.3e-39 164.1 142 58.5
CANSAT78G1772 Cannabis sativa HOM05D005430 ORTHO05D007814 1.1e-38 163.7 138 55.1
CANSAT78G2053 Cannabis sativa HOM05D005430 ORTHO05D007814 1.1e-38 163.7 138 55.1
QL05p063758 Quercus lobata HOM05D005430 ORTHO05D007814 1.1e-38 163.7 122 59.8
Lsat_1_v5_gn_6_62741 Lactuca sativa HOM05D005430 ORTHO05D007814 1.4e-38 163.3 112 58.9
QL05p063717 Quercus lobata HOM05D005430 ORTHO05D007814 2.4e-38 162.5 112 61.6
Rhsim06G0013100 Rhododendron simsii HOM05D005430 ORTHO05D007814 2.4e-38 162.5 119 59.7
Hma1.2p1_0903F.1_g235070 Hydrangea macrophylla HOM05D005430 ORTHO05D007814 4.5e-37 158.3 146 50.7
TPR.G26323 Trifolium pratense HOM05D005430 ORTHO05D007814 7.8e-37 157.5 130 56.2
GSVIVG01029041001 Vitis vinifera HOM05D005430 ORTHO05D007814 7.8e-37 157.5 143 56.6
Sc13g0002820 Simmondsia chinensis HOM05D005430 ORTHO05D007814 1.0e-36 157.1 139 51.1
MELO3C006342.2 Cucumis melo HOM05D005430 ORTHO05D007814 1.3e-36 156.8 142 54.2
CSS0041852 Camellia sinensis var. sinensis HOM05D005430 ORTHO05D007814 1.7e-36 156.4 142 53.5
CsaV3_3G011340 Cucumis sativus L. HOM05D005430 ORTHO05D007814 1.7e-36 156.4 114 61.4
TWI73G0050 Tripterygium wilfordii HOM05D005430 ORTHO05D007814 1.7e-36 156.4 142 54.2
Glyma.15G129600 Glycine max HOM05D005430 ORTHO05D007814 2.3e-36 156.0 136 54.4
Psat1g167840 Pisum sativum HOM05D005430 ORTHO05D007814 6.6e-36 154.5 144 53.5
Sed0020493 Sechium edule HOM05D005430 ORTHO05D007814 6.6e-36 154.5 141 52.5
Sed0021677 Sechium edule HOM05D005430 ORTHO05D007814 6.6e-36 154.5 141 53.9
Manes.15G049100 Manihot esculenta HOM05D005430 ORTHO05D007814 1.1e-35 153.7 142 52.8
Oeu041168.1 Olea europaea HOM05D005430 ORTHO05D007814 1.1e-35 153.7 135 54.1
ClCG05G003630 Citrullus lanatus HOM05D005430 ORTHO05D007814 1.9e-35 152.9 111 61.3
Glyma.09G023500 Glycine max HOM05D005430 ORTHO05D007814 3.3e-35 152.1 136 53.7
Lalb_Chr15g0088741 Lupinus albus HOM05D005430 ORTHO05D007814 4.3e-35 151.8 137 53.3
Medtr2g030080 Medicago truncatula HOM05D005430 ORTHO05D007814 4.3e-35 151.8 141 51.1
VMungo0540G1768 Vigna mungo HOM05D005430 ORTHO05D007814 4.3e-35 151.8 141 51.8
Medtr2g030100 Medicago truncatula HOM05D005430 ORTHO05D007814 5.6e-35 151.4 141 53.9
TPR.G26356 Trifolium pratense HOM05D005430 ORTHO05D007814 5.6e-35 151.4 141 53.2
arahy.Tifrunner.gnm1.ann1.D09HZI Arachis hypogaea HOM05D005430 ORTHO05D007814 2.1e-34 149.4 138 51.4
Phvul.006G128700 Phaseolus vulgaris HOM05D005430 ORTHO05D007814 2.8e-34 149.1 140 51.4
Migut.N00331 Erythranthe guttata HOM05D005430 ORTHO05D007814 3.6e-34 148.7 140 50.0
CAN.G1745.2 Capsicum annuum HOM05D005430 ORTHO05D007814 6.1e-34 147.9 139 50.4
HanXRQChr07g0185851 Helianthus annuus HOM05D005430 ORTHO05D007814 6.1e-34 147.9 146 51.4
Oeu033089.1 Olea europaea HOM05D005430 ORTHO05D007814 6.1e-34 147.9 134 54.5
SalBow3G0850 Salvia bowleyana HOM05D005430 ORTHO05D007814 2.3e-33 146.0 116 55.2
CAN.G706.30 Capsicum annuum HOM05D005430 ORTHO05D007814 1.2e-32 143.7 153 48.4
HanXRQChr02g0059521 Helianthus annuus HOM05D005430 ORTHO05D007814 1.5e-32 143.3 145 46.9
Solyc12g098110.1 Solanum lycopersicum HOM05D005430 ORTHO05D007814 2.6e-32 142.5 148 49.3
Sopen12g032930 Solanum pennellii HOM05D005430 ORTHO05D007814 7.5e-32 141.0 148 48.6
PGSC0003DMG400016877 Solanum tuberosum HOM05D005430 ORTHO05D007814 1.3e-31 140.2 147 49.0
SGA_v2.0_scaffold2G00855 Striga asiatica HOM05D005430 ORTHO05D007814 1.1e-30 137.1 114 56.1
Solyc09g091360.1 Solanum lycopersicum HOM05D005430 ORTHO05D007814 4.1e-30 135.2 143 44.8
vmacro22822 Vaccinium macrocarpon HOM05D005430 ORTHO05D007814 3.3e-27 125.6 112 56.2
Nitab4.5_0008614g0010 Nicotiana tabacum HOM05D005430 ORTHO05D007814 1.5e-24 116.7 121 47.1
SHI00018 Sapria himalayana HOM05D005430 ORTHO05D007814 2.6e-24 115.9 134 47.8
EL10Ac3g06777 Beta vulgaris HOM05D005430 ORTHO05D007814 1.3e-23 113.6 98 52.0
Actinidia25081 Actinidia chinensis HOM05D005430 ORTHO05D007814 3.2e-22 109.0 107 52.3
Cpa.g.sc59.81 Carica papaya HOM05D005430 ORTHO05D000119 3.4e-16 89.0 138 36.2
Duzib212G0436 Durio zibethinus HOM05D005430 ORTHO05D007814 9.9e-16 87.4 145 35.2
Thecc.04G213200 Theobroma cacao HOM05D005430 ORTHO05D007814 6.4e-15 84.7 142 35.2
Cpa.g.sc12.57 Carica papaya HOM05D005430 ORTHO05D007814 4.1e-14 82.0 134 34.3
Migut.G00603 Erythranthe guttata HOM05D005430 ORTHO05D007814 4.1e-14 82.0 112 34.8
COL.COLO4_05733 Corchorus olitorius HOM05D005430 ORTHO05D007814 9.2e-14 80.9 145 32.4
Gohir.D09G053032 Gossypium hirsutum HOM05D005430 ORTHO05D007814 9.2e-14 80.9 94 40.4
Migut.G00604 Erythranthe guttata HOM05D005430 ORTHO05D007814 1.2e-13 80.5 111 33.3
RcHm_v2.0_Chr4g0396551 Rosa chinensis HOM05D005430 ORTHO05D000119 1.6e-13 80.1 135 31.9
Potri.001G053300 Populus trichocarpa HOM05D005430 ORTHO05D007814 2.7e-13 79.3 146 33.6
Gohir.A09G053500 Gossypium hirsutum HOM05D005430 ORTHO05D000119 3.5e-13 79.0 141 32.6
Gohir.D09G053020 Gossypium hirsutum HOM05D005430 ORTHO05D007814 3.5e-13 79.0 141 33.3
Gorai.006G055200 Gossypium raimondii HOM05D005430 ORTHO05D007814 6.0e-13 78.2 141 32.6
Gohir.A09G053300 Gossypium hirsutum HOM05D005430 ORTHO05D007814 7.8e-13 77.8 141 32.6
Gorai.006G055400 Gossypium raimondii HOM05D005430 ORTHO05D007814 1.0e-12 77.4 141 32.6
SalBow2G0067 Salvia bowleyana HOM05D005430 ORTHO05D000119 1.0e-12 77.4 144 32.6
COL.COLO4_34097 Corchorus olitorius HOM05D005430 ORTHO05D007814 1.3e-12 77.0 141 30.5
Migut.H02432 Erythranthe guttata HOM05D005430 ORTHO05D000119 1.7e-12 76.6 109 35.8
COL.COLO4_05734 Corchorus olitorius HOM05D005430 ORTHO05D007814 2.3e-12 76.3 142 31.7
Oeu024845.1 Olea europaea HOM05D005430 ORTHO05D007814 2.3e-12 76.3 111 32.4
COL.COLO4_05736 Corchorus olitorius HOM05D005430 ORTHO05D007814 3.0e-12 75.9 110 35.5
Thecc.04G213100 Theobroma cacao HOM05D005430 ORTHO05D007814 5.1e-12 75.1 138 31.2
COL.COLO4_34096 Corchorus olitorius HOM05D005430 ORTHO05D007814 8.6e-12 74.3 90 38.9
COL.COLO4_34098 Corchorus olitorius HOM05D000048 ORTHO05D000207 1.5e-11 73.6 149 29.5
Migut.J01121 Erythranthe guttata HOM05D000256 ORTHO05D000119 1.9e-11 73.2 119 31.9
SGA_v2.0_scaffold57G20177 Striga asiatica HOM05D005430 ORTHO05D000119 4.3e-11 72.0 113 31.9
Hma1.2p1_1359F.1_g278050 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 5.6e-11 71.6 116 34.5
Nitab4.5_0003185g0070 Nicotiana tabacum HOM05D005430 ORTHO05D007814 5.6e-11 71.6 77 44.2
Manes.04G148500 Manihot esculenta HOM05D000256 ORTHO05D000119 1.2e-10 70.5 147 30.6
COL.COLO4_05731 Corchorus olitorius HOM05D005430 ORTHO05D007814 2.1e-10 69.7 142 30.3
Peaxi162Scf01007g00016 Petunia axillaris HOM05D000256 ORTHO05D000119 2.8e-10 69.3 140 33.6
Duzib151G1037 Durio zibethinus HOM05D005430 ORTHO05D007814 1.1e-09 67.4 110 30.9
Hma1.2p1_0785F.1_g217560 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 1.1e-09 67.4 115 31.3
PGR083G1564 Punica granatum HOM05D005430 ORTHO05D007814 1.1e-09 67.4 92 38.0
Rhsim09G0049800 Rhododendron simsii HOM05D000256 ORTHO05D000119 1.1e-09 67.4 138 30.4
Migut.H02436 Erythranthe guttata HOM05D000256 ORTHO05D000119 1.4e-09 67.0 103 34.0
Eucgr.H00099 Eucalyptus grandis HOM05D010815 ORTHO05D011855 1.8e-09 66.6 111 38.7
Potri.003G201300 Populus trichocarpa HOM05D005430 ORTHO05D000119 1.8e-09 66.6 142 31.0
Potri.010G008300 Populus trichocarpa HOM05D000256 ORTHO05D000119 2.4e-09 66.2 128 27.3
Thecc.04G215700 Theobroma cacao HOM05D005430 ORTHO05D007814 4.0e-09 65.5 140 27.1
Lj4g0012468 Lotus japonicus HOM05D000256 ORTHO05D000119 8.9e-09 64.3 143 27.3
Rhsim03G0222400 Rhododendron simsii HOM05D005430 ORTHO05D007814 8.9e-09 64.3 139 29.5
Hma1.2p1_0146F.1_g065570 Hydrangea macrophylla HOM05D005430 ORTHO05D000119 1.2e-08 63.9 136 30.1
Gorai.009G341000 Gossypium raimondii HOM05D005430 ORTHO05D007814 1.5e-08 63.5 149 30.2
Hma1.2p1_1359F.1_g278080 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 2.0e-08 63.2 137 29.2
Ciclev10023262m.g Citrus clementina HOM05D005430 ORTHO05D007814 3.4e-08 62.4 83 31.3
Gohir.D05G318200 Gossypium hirsutum HOM05D005430 ORTHO05D007814 3.4e-08 62.4 149 29.5
Hma1.2p1_0146F.1_g065590 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 3.4e-08 62.4 142 30.3
Hma1.2p1_0903F.1_g234940 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 3.4e-08 62.4 139 29.5
TWI14G0081 Tripterygium wilfordii HOM05D000256 ORTHO05D000119 3.4e-08 62.4 127 29.9
Migut.F01972 Erythranthe guttata HOM05D000256 ORTHO05D000119 4.4e-08 62.0 138 29.7
Eucgr.B02182 Eucalyptus grandis HOM05D000256 ORTHO05D000119 4.4e-08 62.0 128 30.5
Hma1.2p1_0170F.1_g075380 Hydrangea macrophylla HOM05D005430 ORTHO05D000119 4.4e-08 62.0 141 29.1
Eucgr.L01080 Eucalyptus grandis HOM05D000256 ORTHO05D000119 7.6e-08 61.2 128 30.5
Ciclev10023991m.g Citrus clementina HOM05D000256 ORTHO05D000119 9.9e-08 60.8 121 31.4
CANSAT35G0230 Cannabis sativa HOM05D000256 ORTHO05D000119 1.7e-07 60.1 93 32.3
PSO724G0195 Papaver somniferum HOM05D000256 ORTHO05D000119 2.2e-07 59.7 81 39.5
CiPaw.13G128600 Carya illinoinensis HOM05D000256 ORTHO05D000119 2.9e-07 59.3 99 32.3
COL.COLO4_17920 Corchorus olitorius HOM05D000256 ORTHO05D000119 2.9e-07 59.3 116 30.2
Migut.N00479 Erythranthe guttata HOM05D000256 ORTHO05D000119 2.9e-07 59.3 98 34.7
unitig_699.g19174 Utricularia gibba HOM05D000256 ORTHO05D000119 2.9e-07 59.3 126 31.7
Migut.C00644 Erythranthe guttata HOM05D000256 ORTHO05D000119 4.9e-07 58.5 137 27.7
PGR044G0746 Punica granatum HOM05D000256 ORTHO05D000119 6.4e-07 58.2 148 35.1
SalBow2G2503 Salvia bowleyana HOM05D005430 ORTHO05D000119 6.4e-07 58.2 122 27.9
SalBow4G2587 Salvia bowleyana HOM05D000256 ORTHO05D000119 1.4e-06 57.0 129 31.0
CAN.G1648.6 Capsicum annuum HOM05D000256 ORTHO05D000119 1.9e-06 56.6 116 32.8
CAN.G742.38 Capsicum annuum HOM05D000256 ORTHO05D000119 1.9e-06 56.6 139 29.5
Cpa.g.sc104.9 Carica papaya HOM05D000545 ORTHO05D004272 1.9e-06 56.6 121 29.8
CAN.G229.22 Capsicum annuum HOM05D000256 ORTHO05D000119 2.4e-06 56.2 122 27.9
Migut.F01940 Erythranthe guttata HOM05D000256 ORTHO05D000119 3.2e-06 55.8 134 31.3
Migut.H02457 Erythranthe guttata HOM05D000256 ORTHO05D000119 3.2e-06 55.8 143 29.4
Hma1.2p1_0453F.1_g156140 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 3.2e-06 55.8 149 27.5
Gohir.A05G316800 Gossypium hirsutum HOM05D005430 ORTHO05D007814 5.4e-06 55.1 149 27.5
Lalb_Chr07g0181531 Lupinus albus HOM05D000256 ORTHO05D000119 7.1e-06 54.7 99 30.3
TPR.G15971 Trifolium pratense HOM05D000256 ORTHO05D000119 7.1e-06 54.7 98 29.6
AL7G38890 Arabidopsis lyrata HOM05D000256 ORTHO05D000119 9.2e-06 54.3 100 29.0
Lalb_Chr18g0044321 Lupinus albus HOM05D000256 ORTHO05D000119 9.2e-06 54.3 80 28.8
QL01p019403 Quercus lobata HOM05D000256 ORTHO05D000119 9.2e-06 54.3 91 30.8


User provided reference genes

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