Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G23980 Arabidopsis thaliana HOM05D003628 ORTHO05D004253 0.0e+00 1182.5 715 100.0
AL3G39530 Arabidopsis lyrata HOM05D003628 ORTHO05D004253 1.0e-299 1033.1 730 89.5
Carub.0003s2454 Capsella rubella HOM05D003628 ORTHO05D004253 2.0e-284 982.2 736 85.6
Sp3g21980 Schrenkiella parvula HOM05D003628 ORTHO05D004253 7.3e-258 894.0 742 79.5
Thhalv10002420m.g Eutrema salsugineum HOM05D003628 ORTHO05D004253 8.9e-256 887.1 742 76.4
CARHR100260 Cardamine hirsuta HOM05D003628 ORTHO05D004253 2.8e-241 839.0 741 77.2
BcaB03g14597 Brassica carinata HOM05D003628 ORTHO05D004253 6.5e-214 748.0 728 69.5
BraA03t13490Z Brassica rapa HOM05D003628 ORTHO05D004253 1.4e-213 746.9 734 71.7
A03p43510 Brassica napus HOM05D003628 ORTHO05D004253 3.6e-212 742.3 723 71.6
Aa31LG8G10920 Aethionema arabicum HOM05D003628 ORTHO05D004253 1.9e-205 719.9 712 69.7
C07p12320 Brassica napus HOM05D003628 ORTHO05D004253 1.2e-199 700.7 723 69.7
BcaC06g35665 Brassica carinata HOM05D003628 ORTHO05D004253 1.0e-195 687.6 725 70.3
BolC7t41696H Brassica oleracea HOM05D003628 ORTHO05D004253 2.0e-194 683.3 723 69.4
BcaB06g26600 Brassica carinata HOM05D003628 ORTHO05D004253 3.7e-193 679.1 613 72.8
A07p08160 Brassica napus HOM05D003628 ORTHO05D004253 5.0e-190 668.7 780 65.4
BraA07t28601Z Brassica rapa HOM05D003628 ORTHO05D004253 3.0e-187 659.4 793 59.0
THA.LOC104804570 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 1.5e-186 657.1 745 60.8
THA.LOC104821624 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 1.0e-182 644.4 749 55.4
BcaB04g20394 Brassica carinata HOM05D003628 ORTHO05D004253 1.7e-182 643.7 723 64.2
C07p12290 Brassica napus HOM05D003628 ORTHO05D004253 9.5e-173 611.3 718 64.3
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 8.9e-155 551.6 693 62.6
BcaC01g03342 Brassica carinata HOM05D003628 ORTHO05D004253 2.6e-154 550.1 723 60.0
BolC3t17608H Brassica oleracea HOM05D003628 ORTHO05D004253 8.7e-134 481.9 582 62.2
C03p53470 Brassica napus HOM05D003628 ORTHO05D004253 2.1e-132 477.2 578 61.6
Atru.chr4.1847 Acer truncatum HOM05D003628 ORTHO05D004253 2.0e-106 391.0 829 42.0
QL06p022355 Quercus lobata HOM05D003628 ORTHO05D004253 5.5e-104 382.9 810 38.1
Duzib212G0614 Durio zibethinus HOM05D003628 ORTHO05D004253 1.1e-101 375.2 748 46.4
Dinv27142 Davidia involucrata HOM05D003628 ORTHO05D004253 1.5e-101 374.8 823 39.7
Thecc.04G217100 Theobroma cacao HOM05D003628 ORTHO05D004253 2.0e-101 374.4 773 45.5
Ciclev10004333m.g Citrus clementina HOM05D003628 ORTHO05D004253 9.7e-101 372.1 821 43.6
GSVIVG01029001001 Vitis vinifera HOM05D003628 ORTHO05D004253 4.1e-99 366.7 813 39.4
Gorai.011G164000 Gossypium raimondii HOM05D003628 ORTHO05D004253 9.1e-99 365.5 759 39.9
Gohir.D10G146700 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.4e-98 363.6 758 39.7
Hma1.2p1_1241F.1_g269760 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 1.3e-97 361.7 790 37.3
CiPaw.01G174500 Carya illinoinensis HOM05D003628 ORTHO05D004253 1.7e-97 361.3 818 42.8
PGR142G1422 Punica granatum HOM05D003628 ORTHO05D004253 1.1e-96 358.6 780 40.6
CANSAT78G2050 Cannabis sativa HOM05D003628 ORTHO05D004253 3.2e-96 357.1 816 37.6
Dinv29776 Davidia involucrata HOM05D003628 ORTHO05D004253 1.2e-95 355.1 581 47.8
Manes.03G155400 Manihot esculenta HOM05D003628 ORTHO05D004253 2.1e-95 354.4 802 39.7
Manes.15G048200 Manihot esculenta HOM05D003628 ORTHO05D004253 2.7e-95 354.0 796 38.6
RcHm_v2.0_Chr4g0396341 Rosa chinensis HOM05D003628 ORTHO05D004253 2.7e-95 354.0 828 42.6
Potri.010G062000 Populus trichocarpa HOM05D003628 ORTHO05D004253 1.0e-94 352.1 792 38.3
TWI09G0941 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 1.8e-94 351.3 803 37.7
CSS0020381 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 6.7e-94 349.4 608 48.8
Cc03_g07010 Coffea canephora HOM05D003628 ORTHO05D004253 2.6e-93 347.4 781 41.0
Duzib151G0300 Durio zibethinus HOM05D003628 ORTHO05D004253 7.4e-93 345.9 777 44.8
Gorai.005G036000 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.7e-92 344.7 769 38.6
Gohir.A02G025400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.2e-92 344.4 772 39.0
TWI73G0229 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 6.3e-92 342.8 800 37.9
Hma1.2p1_0574F.1_g181510 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 5.3e-91 339.7 460 49.1
CsaV3_2G012280 Cucumis sativus L. HOM05D003628 ORTHO05D004253 3.5e-90 337.0 828 38.4
Gohir.D02G032600 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.5e-90 336.7 755 38.4
Gorai.006G218800 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.3e-89 335.1 775 41.4
Ca_11787_v3 Cicer arietinum L. HOM05D003628 ORTHO05D004253 1.7e-89 334.7 772 36.8
Migut.G00600 Erythranthe guttata HOM05D003628 ORTHO05D004253 3.8e-89 333.6 798 38.3
Sc19g0002160 Simmondsia chinensis HOM05D003628 ORTHO05D004253 6.5e-89 332.8 752 38.2
Nitab4.5_0001998g0040 Nicotiana tabacum HOM05D003628 ORTHO05D004253 8.5e-89 332.4 817 35.0
Actinidia39943 Actinidia chinensis HOM05D003628 ORTHO05D004253 1.2e-87 328.6 813 36.9
CiPaw.02G103800 Carya illinoinensis HOM05D003628 ORTHO05D004253 1.6e-87 328.2 441 53.3
MELO3C023064.2 Cucumis melo HOM05D003628 ORTHO05D004253 1.0e-86 325.5 831 40.1
Rhsim02G0049400 Rhododendron simsii HOM05D003628 ORTHO05D004253 1.8e-86 324.7 810 42.5
Glyma.20G079600 Glycine max HOM05D003628 ORTHO05D004253 2.3e-86 324.3 778 36.6
Gohir.A09G201200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.3e-86 324.3 770 40.1
Nn1g03063 Nelumbo nucifera HOM05D003628 ORTHO05D004253 3.0e-86 323.9 814 36.5
MSTRG.4198 Avicennia marina HOM05D003628 ORTHO05D004253 5.2e-86 323.2 777 42.1
arahy.Tifrunner.gnm1.ann1.STBA65 Arachis hypogaea HOM05D003628 ORTHO05D004253 6.7e-86 322.8 776 36.3
Nitab4.5_0002738g0080 Nicotiana tabacum HOM05D003628 ORTHO05D004253 3.3e-85 320.5 810 35.1
Peaxi162Scf01007g00014 Petunia axillaris HOM05D003628 ORTHO05D004253 7.4e-85 319.3 808 34.8
Haze_11526 Corylus avellana HOM05D003628 ORTHO05D004253 1.3e-84 318.5 905 33.4
Lalb_Chr01g0011261 Lupinus albus HOM05D003628 ORTHO05D004253 1.4e-83 315.1 799 35.8
DCAR_027362 Daucus carota HOM05D003628 ORTHO05D004253 3.1e-83 313.9 756 42.3
Gohir.D09G195400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.1e-83 313.5 779 38.5
Peaxi162Scf00047g00163 Petunia axillaris HOM05D003628 ORTHO05D004253 1.2e-82 312.0 547 48.6
Lalb_Chr03g0036821 Lupinus albus HOM05D003628 ORTHO05D004253 2.0e-82 311.2 808 35.9
Prupe.1G054700 Prunus persica HOM05D003628 ORTHO05D004253 2.6e-82 310.8 816 41.8
Sed0002438 Sechium edule HOM05D003628 ORTHO05D004253 2.6e-82 310.8 837 40.4
Cfa014840 Carpinus fangiana HOM05D003628 ORTHO05D004253 3.5e-82 310.5 800 41.2
Eucgr.H00111 Eucalyptus grandis HOM05D003628 ORTHO05D004253 4.5e-82 310.1 825 41.8
Lj6g0006649 Lotus japonicus HOM05D003628 ORTHO05D004253 7.7e-82 309.3 709 37.4
Sopen12g032860 Solanum pennellii HOM05D003628 ORTHO05D004253 1.0e-81 308.9 570 41.8
TAR633G2428 Trochodendron aralioides HOM05D003628 ORTHO05D004253 2.2e-81 307.8 834 39.4
Nitab4.5_0000451g0120 Nicotiana tabacum HOM05D003628 ORTHO05D004253 5.0e-81 306.6 792 39.9
Solyc12g097070.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 5.0e-81 306.6 559 42.0
TPR.G23641 Trifolium pratense HOM05D003628 ORTHO05D004253 8.5e-81 305.8 775 35.0
PSO832G4023 Papaver somniferum HOM05D003628 ORTHO05D004253 4.2e-80 303.5 809 36.2
Potri.008G174800 Populus trichocarpa HOM05D003628 ORTHO05D004253 5.5e-80 303.1 772 40.7
Sopen09g034100 Solanum pennellii HOM05D003628 ORTHO05D004253 7.2e-80 302.8 772 41.1
CAN.G566.2 Capsicum annuum HOM05D003628 ORTHO05D004253 1.2e-79 302.0 791 35.1
FvH4_4g05311 Fragaria vesca HOM05D003628 ORTHO05D004253 2.1e-79 301.2 816 39.5
PSO764G0031 Papaver somniferum HOM05D003628 ORTHO05D004253 2.1e-79 301.2 812 35.7
arahy.Tifrunner.gnm1.ann1.7KG1FV Arachis hypogaea HOM05D003628 ORTHO05D004253 2.7e-79 300.8 784 35.1
CSS0021427 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 4.7e-79 300.1 812 34.4
FAN22G0313 Fragaria x ananassa HOM05D003628 ORTHO05D004253 4.7e-79 300.1 809 35.1
TAR365G0848 Trochodendron aralioides HOM05D003628 ORTHO05D004253 8.0e-79 299.3 776 41.4
Phvul.007G238700 Phaseolus vulgaris HOM05D003628 ORTHO05D004253 1.8e-78 298.1 779 40.4
Sed0008500 Sechium edule HOM05D003628 ORTHO05D004253 4.0e-78 297.0 844 39.0
Solyc09g091120.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 5.2e-78 296.6 813 39.6
CAN.G812.46 Capsicum annuum HOM05D003628 ORTHO05D004253 6.7e-78 296.2 758 41.3
FAN07G2212 Fragaria x ananassa HOM05D003628 ORTHO05D004253 9.7e-77 292.4 810 39.3
Lalb_Chr19g0128621 Lupinus albus HOM05D003628 ORTHO05D004253 1.3e-76 292.0 813 39.6
EL10Ac3g06305 Beta vulgaris HOM05D003628 ORTHO05D004253 2.2e-76 291.2 770 34.7
Sabra10G0044300 Salix brachista HOM05D006620 ORTHO05D008921 1.4e-75 288.5 527 41.4
Sabra08G0133300 Salix brachista HOM05D003628 ORTHO05D004253 2.4e-75 287.7 785 34.8
Medtr1g046350 Medicago truncatula HOM05D003628 ORTHO05D004253 9.1e-75 285.8 775 33.9
TAR362G1171 Trochodendron aralioides HOM05D003628 ORTHO05D004253 1.6e-74 285.0 801 35.6
ECA234G0302 Erigeron canadensis HOM05D003628 ORTHO05D004253 2.0e-74 284.6 507 50.9
SGA_v2.0_scaffold57G20181 Striga asiatica HOM05D003628 ORTHO05D004253 3.5e-74 283.9 735 34.8
Psat6g109680 Pisum sativum HOM05D003628 ORTHO05D004253 6.5e-73 279.6 778 33.2
ATR0580G379 Amborella trichopoda HOM05D003628 ORTHO05D004253 8.5e-73 279.3 730 34.5
AUR62030025 Chenopodium quinoa HOM05D003628 ORTHO05D004253 8.5e-73 279.3 776 33.9
AUR62002607 Chenopodium quinoa HOM05D003628 ORTHO05D004253 1.2e-71 275.4 365 46.8
Os01g0911800 Oryza sativa ssp. japonica HOM05D003628 ORTHO05D004253 6.1e-71 273.1 674 39.9
Ah.07g204120 Amaranthus hybridus HOM05D003628 ORTHO05D004253 8.0e-71 272.7 508 39.4
HanXRQChr10g0311151 Helianthus annuus HOM05D003628 ORTHO05D004253 8.0e-71 272.7 632 44.0
Zm00001eb143670 Zea mays HOM05D003628 ORTHO05D004253 8.0e-71 272.7 766 37.2
MBI05_g37047_MAGBIO Magnolia biondii HOM05D003628 ORTHO05D004253 6.8e-70 269.6 833 39.4
Zm00001eb365010 Zea mays HOM05D003628 ORTHO05D004253 3.4e-69 267.3 771 35.3
HanXRQChr12g0359881 Helianthus annuus HOM05D003628 ORTHO05D004253 4.4e-69 266.9 699 42.5
MD16G1232700 Malus domestica HOM05D003628 ORTHO05D004253 4.4e-69 266.9 821 39.7
vmacro15908 Vaccinium macrocarpon HOM05D003628 ORTHO05D004253 7.0e-67 259.6 791 40.2
CDE07G1740 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 1.0e-65 255.8 772 39.4
HPP92_014197 Vanilla planifolia HOM05D003628 ORTHO05D004253 1.3e-65 255.4 784 38.9
unitig_748.g7341 Utricularia gibba HOM05D003628 ORTHO05D004253 8.6e-65 252.7 713 34.4
VMungo0720G2372 Vigna mungo HOM05D003628 ORTHO05D004253 1.6e-63 248.4 463 40.2
HPP92_026454 Vanilla planifolia HOM05D003628 ORTHO05D004253 1.0e-62 245.7 485 48.5
Lsat_1_v5_gn_5_148361 Lactuca sativa HOM05D003628 ORTHO05D004253 2.3e-62 244.6 520 46.3
ClCG06G007410 Citrullus lanatus HOM05D003628 ORTHO05D004253 6.3e-60 236.5 807 36.9
Cpa.g.sc59.57 Carica papaya HOM05D003628 ORTHO05D004253 9.2e-59 232.6 637 38.9
Lj3A630T50 Lonicera japonica HOM05D003628 ORTHO05D004253 5.0e-57 226.9 678 36.9
FAN12G2520 Fragaria x ananassa HOM05D003628 ORTHO05D004253 1.4e-54 218.8 997 28.6
Glyma.10G128350 Glycine max HOM05D003628 ORTHO05D004253 4.0e-54 217.2 301 45.8
Aqoxy1G00125 Aquilegia oxysepala HOM05D003628 ORTHO05D004253 3.1e-46 191.0 803 34.2
Hund12227 Selenicereus undatus HOM05D003628 ORTHO05D004253 1.9e-40 171.8 539 33.2
Oeu012942.2 Olea europaea HOM05D003628 ORTHO05D004253 2.8e-39 167.9 164 56.7
CDE04G0520 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 6.8e-38 163.3 303 51.8
Nitab4.5_0003287g0020 Nicotiana tabacum HOM05D003628 ORTHO05D004253 3.0e-33 147.9 558 30.8
Nn3g19840 Nelumbo nucifera HOM05D003628 ORTHO05D004253 7.3e-32 143.3 777 27.9
Oeu023151.1 Olea europaea HOM05D003628 ORTHO05D004253 4.4e-29 134.0 115 62.6
MD13G1227500 Malus domestica HOM05D003628 ORTHO05D004253 1.1e-27 129.4 100 69.0
Pp3c20_15710 Physcomitrium patens HOM05D003628 ORTHO05D004253 1.6e-26 125.6 423 29.8
SEGI_10173 Sequoiadendron giganteum HOM05D003628 ORTHO05D004253 1.7e-25 122.1 391 43.2
Pp3c24_10590 Physcomitrium patens HOM05D003628 ORTHO05D004253 3.3e-24 117.9 421 29.2
Cpa.g.sc59.56 Carica papaya HOM05D003628 ORTHO05D004253 6.2e-23 113.6 164 48.8
AagrBONN_evm.TU.Sc2ySwM_362.1684 Anthoceros agrestis HOM05D003628 ORTHO05D004253 3.1e-22 111.3 772 25.4
SMO116G0337 Selaginella moellendorffii HOM05D003628 ORTHO05D004253 2.6e-21 108.2 355 34.4
Mapoly0068s0063 Marchantia polymorpha HOM05D003628 ORTHO05D004253 1.9e-19 102.1 575 26.6
CBR_g38414 Chara braunii HOM05D003628 ORTHO05D004253 9.3e-19 99.8 387 27.6
Actinidia11385 Actinidia chinensis HOM05D003628 ORTHO05D004253 1.0e-17 96.3 72 69.4
Lj6A641G44 Lonicera japonica HOM05D003628 ORTHO05D004253 1.0e-17 96.3 518 27.8
Gohir.D09G057732 Gossypium hirsutum HOM05D003628 ORTHO05D004253 6.6e-17 93.6 74 66.2
Hma1.2p1_0112F.1_g055050 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 2.8e-15 88.2 62 74.2
Gohir.D04G116566 Gossypium hirsutum HOM05D003628 ORTHO05D004253 6.2e-15 87.0 66 66.7
Hma1.2p1_0112F.1_g055040 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 1.2e-13 82.8 172 40.7
Oeu023150.1 Olea europaea HOM05D003628 ORTHO05D004253 3.4e-13 81.3 57 70.2
Pp3c23_8100 Physcomitrium patens HOM05D003628 ORTHO05D004253 1.7e-12 79.0 451 25.5
AL2G14740 Arabidopsis lyrata HOM05D000013 ORTHO05D000011 2.2e-12 78.6 49 81.6
PGSC0003DMG402011586 Solanum tuberosum HOM05D003628 ORTHO05D004253 2.7e-10 71.6 60 61.7
Gohir.D03G086101 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.0e-09 69.7 52 69.2
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 2.3e-09 68.6 52 69.2
Gohir.D08G165950 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.0e-09 68.2 50 70.0
AagrBONN_evm.TU.Sc2ySwM_344.5018 Anthoceros agrestis HOM05D003628 ORTHO05D004253 6.7e-09 67.0 93 43.0
Gorai.013G043600 Gossypium raimondii HOM05D003628 ORTHO05D004253 8.7e-09 66.6 50 68.0
Gohir.D11G226200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.9e-08 65.5 44 75.0
Hund12233 Selenicereus undatus HOM05D003628 ORTHO05D004253 2.5e-08 65.1 72 47.2
AL5G30090 Arabidopsis lyrata HOM05D003628 ORTHO05D004253 3.3e-08 64.7 41 85.4
Gorai.007G244100 Gossypium raimondii HOM05D003628 ORTHO05D004253 5.6e-08 63.9 44 72.7
Gorai.007G071000 Gossypium raimondii HOM05D003628 ORTHO05D004253 9.6e-08 63.2 45 73.3
Ah.14g082010 Amaranthus hybridus HOM05D003628 ORTHO05D004253 3.7e-07 61.2 43 69.8
Gohir.D01G060866 Gossypium hirsutum HOM05D003628 ORTHO05D004253 6.2e-07 60.5 39 76.9
Gohir.A11G239380 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.8e-06 58.9 39 74.4
Gohir.D06G132966 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.1e-06 58.2 36 80.6
Gohir.D08G175500 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.0e-06 57.8 39 74.4
Gorai.003G055900 Gossypium raimondii HOM05D005297 ORTHO05D006545 4.0e-06 57.8 49 59.2
Gorai.010G154900 Gossypium raimondii HOM05D003628 ORTHO05D004253 4.0e-06 57.8 36 80.6


User provided reference genes

Program Settings