Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G23930 Arabidopsis thaliana HOM05D005697 ORTHO05D006951 2.1e-94 349.4 225 100.0
Thhalv10002645m.g Eutrema salsugineum HOM05D005697 ORTHO05D006951 2.3e-72 276.2 226 77.4
AL3G39620 Arabidopsis lyrata HOM05D005697 ORTHO05D006951 5.1e-72 275.0 226 84.1
Sp3g22030 Schrenkiella parvula HOM05D005697 ORTHO05D006951 2.8e-70 269.2 230 75.2
BcaB06g26605 Brassica carinata HOM05D005697 ORTHO05D006951 2.4e-69 266.2 228 70.2
BcaC06g35669 Brassica carinata HOM05D005697 ORTHO05D006951 2.6e-68 262.7 228 71.1
C07p12260 Brassica napus HOM05D005697 ORTHO05D006951 2.6e-68 262.7 228 71.1
BolC7t41693H Brassica oleracea HOM05D005697 ORTHO05D006951 2.6e-68 262.7 228 71.1
Carub.0003s2459 Capsella rubella HOM05D005697 ORTHO05D006951 9.9e-68 260.8 227 82.4
BraA07t28595Z Brassica rapa HOM05D005697 ORTHO05D006951 2.9e-67 259.2 228 68.4
A07p08110 Brassica napus HOM05D005697 ORTHO05D006951 4.2e-66 255.4 230 69.1
CARHR100340 Cardamine hirsuta HOM05D005697 ORTHO05D006951 5.1e-56 221.9 230 60.9
Aa31LG8G10940 Aethionema arabicum HOM05D005697 ORTHO05D006951 3.9e-40 169.1 228 52.2
Aa31LG9G4120 Aethionema arabicum HOM05D005697 ORTHO05D006951 3.4e-36 156.0 225 56.0
THA.LOC104808734 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 4.6e-33 145.6 228 44.7
AT4G13540 Arabidopsis thaliana HOM05D005697 ORTHO05D006951 1.0e-32 144.4 224 50.9
Carub.0007s2900 Capsella rubella HOM05D005697 ORTHO05D006951 2.3e-32 143.3 224 48.2
BcaC02g09418 Brassica carinata HOM05D005697 ORTHO05D006951 4.3e-31 139.0 225 48.4
BolC4t25821H Brassica oleracea HOM05D005697 ORTHO05D006951 4.3e-31 139.0 225 48.4
THA.LOC104804567 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 7.4e-31 138.3 226 46.0
AL7G43130 Arabidopsis lyrata HOM05D005697 ORTHO05D006951 9.7e-31 137.9 222 49.5
CARHR219170 Cardamine hirsuta HOM05D005697 ORTHO05D006951 1.3e-30 137.5 225 47.6
C04p42400 Brassica napus HOM05D005697 ORTHO05D006951 3.7e-30 136.0 223 48.4
Sp7g11140 Schrenkiella parvula HOM05D005697 ORTHO05D006951 3.7e-30 136.0 226 47.8
A04p08640 Brassica napus HOM05D005697 ORTHO05D006951 2.0e-28 130.2 198 48.5
BcaB03g16086 Brassica carinata HOM05D005697 ORTHO05D006951 7.7e-28 128.3 227 47.1
BcaC01g03341 Brassica carinata HOM05D005697 ORTHO05D006951 1.4e-26 124.0 218 45.0
Thhalv10026312m.g Eutrema salsugineum HOM05D005697 ORTHO05D006951 1.2e-25 120.9 196 48.5
THA.LOC104821627 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 1.2e-20 104.4 225 38.7
Cpa.g.sc59.48 Carica papaya HOM05D005697 ORTHO05D006951 2.9e-19 99.8 117 55.6
QL06p022167 Quercus lobata HOM05D005697 ORTHO05D006951 8.5e-19 98.2 116 51.7
Duzib212G0179 Durio zibethinus HOM05D005697 ORTHO05D006951 2.5e-18 96.7 233 39.1
Cfa014837 Carpinus fangiana HOM05D005697 ORTHO05D006951 4.2e-18 95.9 113 54.0
Glyma.10G130200 Glycine max HOM05D005697 ORTHO05D006951 1.2e-17 94.4 114 52.6
Haze_11516 Corylus avellana HOM05D005697 ORTHO05D006951 1.6e-17 94.0 113 53.1
Haze_11522 Corylus avellana HOM05D005697 ORTHO05D006951 1.6e-17 94.0 113 53.1
Atru.chr4.1856 Acer truncatum HOM05D005697 ORTHO05D006951 3.6e-17 92.8 114 50.9
Duzib151G0493 Durio zibethinus HOM05D005697 ORTHO05D006951 1.0e-16 91.3 114 50.0
TPR.G23989 Trifolium pratense HOM05D005697 ORTHO05D006951 1.4e-16 90.9 114 49.1
ClCG06G017260 Citrullus lanatus HOM05D005697 ORTHO05D006951 3.0e-16 89.7 119 48.7
Medtr1g046070 Medicago truncatula HOM05D005697 ORTHO05D006951 3.0e-16 89.7 114 50.0
Sed0013611 Sechium edule HOM05D005697 ORTHO05D006951 3.0e-16 89.7 114 50.0
arahy.Tifrunner.gnm1.ann1.BKX7X4 Arachis hypogaea HOM05D005697 ORTHO05D006951 5.1e-16 89.0 114 50.9
C03p53500 Brassica napus HOM05D005697 ORTHO05D006951 6.7e-16 88.6 112 64.3
BolC3t17610H Brassica oleracea HOM05D005697 ORTHO05D006951 6.7e-16 88.6 112 64.3
CsaV3_1G001240 Cucumis sativus L. HOM05D005697 ORTHO05D006951 6.7e-16 88.6 119 47.9
CSS0038279 Camellia sinensis var. sinensis HOM05D005697 ORTHO05D006951 1.1e-15 87.8 114 50.0
MELO3C026270.2 Cucumis melo HOM05D005697 ORTHO05D006951 1.1e-15 87.8 115 49.6
COL.COLO4_07143 Corchorus olitorius HOM05D005697 ORTHO05D006951 1.5e-15 87.4 226 42.0
Prupe.1G054100 Prunus persica HOM05D005697 ORTHO05D006951 1.5e-15 87.4 116 50.9
arahy.Tifrunner.gnm1.ann1.1SMG72 Arachis hypogaea HOM05D005697 ORTHO05D006951 2.0e-15 87.0 114 49.1
CiPaw.02G104000 Carya illinoinensis HOM05D005697 ORTHO05D006951 2.6e-15 86.7 204 36.3
Glyma.20G081000 Glycine max HOM05D005697 ORTHO05D006951 2.6e-15 86.7 183 38.3
Lalb_Chr19g0128591 Lupinus albus HOM05D005697 ORTHO05D006951 2.6e-15 86.7 114 50.9
Eucgr.H02876 Eucalyptus grandis HOM05D005697 ORTHO05D006951 3.3e-15 86.3 114 51.8
Nn1g03052 Nelumbo nucifera HOM05D005697 ORTHO05D006951 3.3e-15 86.3 124 43.5
RcHm_v2.0_Chr4g0396171 Rosa chinensis HOM05D005697 ORTHO05D006951 5.7e-15 85.5 112 51.8
Sc19g0005740 Simmondsia chinensis HOM05D005697 ORTHO05D006951 5.7e-15 85.5 121 47.9
Manes.03G155600 Manihot esculenta HOM05D005697 ORTHO05D006951 7.4e-15 85.1 113 46.0
Lalb_Chr03g0036851 Lupinus albus HOM05D005697 ORTHO05D006951 9.7e-15 84.7 217 41.0
GSVIVG01001870001 Vitis vinifera HOM05D005697 ORTHO05D006951 1.3e-14 84.3 115 48.7
TWI53G2060 Tripterygium wilfordii HOM05D005697 ORTHO05D006951 2.2e-14 83.6 115 45.2
FvH4_4g05260 Fragaria vesca HOM05D005697 ORTHO05D006951 3.7e-14 82.8 112 47.3
FAN12G1366 Fragaria x ananassa HOM05D005697 ORTHO05D006951 3.7e-14 82.8 112 47.3
Sabra10G0044100 Salix brachista HOM05D005697 ORTHO05D006951 3.7e-14 82.8 113 46.9
FAN07G2767 Fragaria x ananassa HOM05D005697 ORTHO05D006951 4.8e-14 82.4 112 48.2
FAN17G2424 Fragaria x ananassa HOM05D005697 ORTHO05D006951 4.8e-14 82.4 112 48.2
FAN22G1047 Fragaria x ananassa HOM05D005697 ORTHO05D006951 4.8e-14 82.4 112 48.2
AUR62035897 Chenopodium quinoa HOM05D005697 ORTHO05D006951 6.3e-14 82.0 125 40.8
VMungo0720G1671 Vigna mungo HOM05D005697 ORTHO05D006951 6.3e-14 82.0 114 50.0
CANSAT78G1745 Cannabis sativa HOM05D005697 ORTHO05D006951 8.2e-14 81.6 117 47.0
Gohir.D09G195200 Gossypium hirsutum HOM05D005697 ORTHO05D006951 8.2e-14 81.6 111 47.7
Potri.010G062600 Populus trichocarpa HOM05D005697 ORTHO05D006951 1.1e-13 81.3 113 43.4
Rhsim02G0049300 Rhododendron simsii HOM05D005697 ORTHO05D006951 1.1e-13 81.3 114 49.1
Solyc12g097060.1 Solanum lycopersicum HOM05D005697 ORTHO05D006951 1.1e-13 81.3 113 45.1
Dinv27139 Davidia involucrata HOM05D005697 ORTHO05D006951 1.4e-13 80.9 114 46.5
ECA233G3140 Erigeron canadensis HOM05D005697 ORTHO05D006951 1.4e-13 80.9 114 46.5
Lsat_1_v5_gn_6_67840 Lactuca sativa HOM05D005697 ORTHO05D006951 1.4e-13 80.9 115 46.1
EL10Ac3g06730 Beta vulgaris HOM05D005697 ORTHO05D006951 1.8e-13 80.5 113 45.1
MD13G1226700 Malus domestica HOM05D005697 ORTHO05D006951 1.8e-13 80.5 131 45.0
CDE05G2497 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 4.1e-13 79.3 131 43.5
Sed0003887 Sechium edule HOM05D005697 ORTHO05D006951 4.1e-13 79.3 113 46.0
Thecc.04G218700 Theobroma cacao HOM05D005697 ORTHO05D006951 4.1e-13 79.3 225 34.2
CAN.G566.3 Capsicum annuum HOM05D005697 ORTHO05D006951 5.3e-13 79.0 113 44.2
CiPaw.01G174800 Carya illinoinensis HOM05D005697 ORTHO05D006951 1.2e-12 77.8 218 33.9
Ciclev10005805m.g Citrus clementina HOM05D005697 ORTHO05D006951 1.6e-12 77.4 114 44.7
TAR365G1050 Trochodendron aralioides HOM05D005697 ORTHO05D006951 1.6e-12 77.4 115 47.0
Psat6g106680 Pisum sativum HOM05D005697 ORTHO05D006951 2.6e-12 76.6 98 50.0
PGSC0003DMG400008629 Solanum tuberosum HOM05D005697 ORTHO05D006951 2.6e-12 76.6 113 43.4
Actinidia11384 Actinidia chinensis HOM05D005697 ORTHO05D006951 3.5e-12 76.3 107 45.8
SalBow3G1865 Salvia bowleyana HOM05D005697 ORTHO05D006951 4.5e-12 75.9 109 45.0
SalBow3G3550 Salvia bowleyana HOM05D005697 ORTHO05D006951 4.5e-12 75.9 109 45.0
Hund24861 Selenicereus undatus HOM05D005697 ORTHO05D006951 4.5e-12 75.9 112 44.6
Nn3g19835 Nelumbo nucifera HOM05D005697 ORTHO05D006951 7.7e-12 75.1 123 40.7
Peaxi162Scf01007g00013 Petunia axillaris HOM05D005697 ORTHO05D006951 7.7e-12 75.1 122 41.0
MBI07_g15425_MAGBIO Magnolia biondii HOM05D005697 ORTHO05D006951 1.0e-11 74.7 113 43.4
TWI09G0842 Tripterygium wilfordii HOM05D005697 ORTHO05D006951 1.3e-11 74.3 200 34.5
Potri.008G174400 Populus trichocarpa HOM05D005697 ORTHO05D006951 1.7e-11 73.9 104 45.2
Gorai.006G218600 Gossypium raimondii HOM05D005697 ORTHO05D006951 2.2e-11 73.6 217 35.0
AUR62035343 Chenopodium quinoa HOM05D005697 ORTHO05D006951 2.9e-11 73.2 189 33.9
Nitab4.5_0001998g0050 Nicotiana tabacum HOM05D005697 ORTHO05D006951 2.9e-11 73.2 106 44.3
Nitab4.5_0002738g0060 Nicotiana tabacum HOM05D005697 ORTHO05D006951 2.9e-11 73.2 108 42.6
HPP92_005453 Vanilla planifolia HOM05D005697 ORTHO05D006951 2.9e-11 73.2 125 40.8
Solyc09g091060.3 Solanum lycopersicum HOM05D005697 ORTHO05D006951 5.0e-11 72.4 114 41.2
Sopen09g034040 Solanum pennellii HOM05D005697 ORTHO05D006951 5.0e-11 72.4 114 41.2
TAR362G0923 Trochodendron aralioides HOM05D005697 ORTHO05D006951 6.5e-11 72.0 112 43.8
Cc03_g06970 Coffea canephora HOM05D005697 ORTHO05D006951 1.1e-10 71.2 116 44.0
Migut.N00325 Erythranthe guttata HOM05D005697 ORTHO05D006951 1.1e-10 71.2 103 46.6
Peaxi162Scf00125g01016 Petunia axillaris HOM05D005697 ORTHO05D006951 1.1e-10 71.2 114 42.1
Manes.15G047800 Manihot esculenta HOM05D005697 ORTHO05D006951 1.5e-10 70.9 113 43.4
CDE02G0931 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 5.5e-10 68.9 114 39.5
vmacro15494 Vaccinium macrocarpon HOM05D005697 ORTHO05D006951 5.5e-10 68.9 219 35.6
MSTRG.24645 Avicennia marina HOM05D005697 ORTHO05D006951 7.2e-10 68.6 112 44.6
MSTRG.21934 Avicennia marina HOM05D005697 ORTHO05D006951 9.4e-10 68.2 106 43.4
DCAR_024305 Daucus carota HOM05D005697 ORTHO05D006951 1.2e-09 67.8 240 29.6
Gohir.A09G201000 Gossypium hirsutum HOM05D005697 ORTHO05D006951 1.2e-09 67.8 111 42.3
BraA04t16558Z Brassica rapa HOM05D005697 ORTHO05D006951 2.1e-09 67.0 128 39.8
Glyma.14G108200 Glycine max HOM05D005697 ORTHO05D006951 2.7e-09 66.6 105 44.8
Sabra08G0132900 Salix brachista HOM05D005697 ORTHO05D006951 2.7e-09 66.6 196 32.7
CAN.G812.40 Capsicum annuum HOM05D005697 ORTHO05D006951 3.6e-09 66.2 114 40.4
Oeu007537.1 Olea europaea HOM05D005697 ORTHO05D006951 4.7e-09 65.9 106 43.4
Oeu008818.1 Olea europaea HOM05D005697 ORTHO05D006951 1.8e-08 63.9 106 43.4
Phvul.007G233100 Phaseolus vulgaris HOM05D005697 ORTHO05D006951 3.0e-08 63.2 90 47.8
Ah.13g075010 Amaranthus hybridus HOM05D005697 ORTHO05D006951 6.7e-08 62.0 112 39.3
PSO339G1845 Papaver somniferum HOM05D005697 ORTHO05D006951 6.7e-08 62.0 115 39.1
PSO063G5372 Papaver somniferum HOM05D005697 ORTHO05D006951 1.1e-07 61.2 115 39.1
Lj6g0023034 Lotus japonicus HOM05D005697 ORTHO05D006951 3.3e-07 59.7 87 48.3
unitig_26.g9545 Utricularia gibba HOM05D005697 ORTHO05D006951 5.7e-07 58.9 112 36.6
SGA_v2.0_scaffold31G12607 Striga asiatica HOM05D005697 ORTHO05D006951 1.3e-06 57.8 103 41.7


User provided reference genes

Program Settings