Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G23910 Arabidopsis thaliana HOM05D006138 ORTHO05D007778 1.4e-229 799.3 422 100.0
AT3G24255 Arabidopsis thaliana HOM05D006138 ORTHO05D007778 2.3e-219 765.4 429 94.9
AL3G38900 Arabidopsis lyrata HOM05D006138 ORTHO05D007778 2.5e-205 718.8 423 90.8
Carub.0003s2421 Capsella rubella HOM05D006138 ORTHO05D007778 9.2e-200 700.3 422 88.2
Sp3g21610 Schrenkiella parvula HOM05D006138 ORTHO05D007778 2.7e-183 645.6 426 80.8
C07p13230 Brassica napus HOM05D006138 ORTHO05D007778 3.0e-166 589.0 421 74.3
BcaC06g35587 Brassica carinata HOM05D006138 ORTHO05D007778 1.5e-165 586.6 422 74.2
A07p08490 Brassica napus HOM05D006138 ORTHO05D007778 1.5e-165 586.6 421 74.6
BcaB06g26554 Brassica carinata HOM05D006138 ORTHO05D007778 2.1e-164 582.8 423 75.4
BolC7t41815H Brassica oleracea HOM05D006138 ORTHO05D007778 5.8e-162 574.7 428 72.7
BraA07t28634Z Brassica rapa HOM05D006138 ORTHO05D007778 1.4e-160 570.1 428 72.2
Aa31LG8G10490 Aethionema arabicum HOM05D006138 ORTHO05D007778 1.6e-156 556.6 430 70.7
Thhalv10002763m.g Eutrema salsugineum HOM05D006138 ORTHO05D007778 3.8e-153 545.4 350 83.4
THA.LOC104804805 Tarenaya hassleriana HOM05D006138 ORTHO05D007778 1.2e-143 513.8 410 67.3
Cpa.g.sc83.29 Carica papaya HOM05D006138 ORTHO05D007778 2.0e-114 416.8 427 53.2
Gohir.A05G323100 Gossypium hirsutum HOM05D006138 ORTHO05D007778 1.4e-112 410.6 424 53.1
Thecc.04G198400 Theobroma cacao HOM05D006138 ORTHO05D007778 3.2e-112 409.5 426 53.1
Gorai.009G350500 Gossypium raimondii HOM05D006138 ORTHO05D007778 1.4e-110 404.1 424 52.4
Gohir.D05G326000 Gossypium hirsutum HOM05D006138 ORTHO05D007778 2.8e-108 396.4 424 51.9
Dinv27208 Davidia involucrata HOM05D006138 ORTHO05D007778 8.0e-103 378.3 419 49.9
Potri.001G317900 Populus trichocarpa HOM05D006138 ORTHO05D007778 1.2e-101 374.4 422 49.8
COL.COLO4_20197 Corchorus olitorius HOM05D006138 ORTHO05D007778 1.8e-99 367.1 423 50.1
Actinidia38756 Actinidia chinensis HOM05D006138 ORTHO05D007778 1.1e-96 357.8 419 48.0
Atru.chr4.1604 Acer truncatum HOM05D006138 ORTHO05D007778 3.2e-96 356.3 386 50.3
GSVIVG01020999001 Vitis vinifera HOM05D006138 ORTHO05D007778 1.6e-95 354.0 423 46.1
TWI09G0334 Tripterygium wilfordii HOM05D006138 ORTHO05D007778 3.6e-95 352.8 408 48.0
TAR362G0162 Trochodendron aralioides HOM05D006138 ORTHO05D007778 1.4e-94 350.9 428 46.0
Cfa014952 Carpinus fangiana HOM05D006138 ORTHO05D007778 2.6e-93 346.7 427 48.7
TWI53G0419 Tripterygium wilfordii HOM05D006138 ORTHO05D007778 7.5e-93 345.1 422 47.4
CANSAT78G1344 Cannabis sativa HOM05D006138 ORTHO05D007778 4.8e-92 342.4 411 48.9
CANSAT78G2425 Cannabis sativa HOM05D006138 ORTHO05D007778 4.8e-92 342.4 411 48.9
Manes.15G055900 Manihot esculenta HOM05D006138 ORTHO05D007778 3.1e-91 339.7 367 49.9
vmacro15557 Vaccinium macrocarpon HOM05D006138 ORTHO05D007778 1.7e-89 334.0 412 45.1
CiPaw.02G065100 Carya illinoinensis HOM05D006138 ORTHO05D007778 3.8e-89 332.8 421 47.0
Nn1g07955 Nelumbo nucifera HOM05D006138 ORTHO05D007778 5.5e-88 328.9 417 44.6
Rhsim02G0060900 Rhododendron simsii HOM05D006138 ORTHO05D007778 6.1e-87 325.5 563 37.1
RhsimUnG0035600 Rhododendron simsii HOM05D006138 ORTHO05D007778 5.2e-86 322.4 547 38.0
Oeu025031.1 Olea europaea HOM05D006138 ORTHO05D007778 3.4e-85 319.7 413 43.3
MD04G1014100 Malus domestica HOM05D006138 ORTHO05D007778 4.4e-85 319.3 410 46.6
Sc13g0000300 Simmondsia chinensis HOM05D006138 ORTHO05D007778 8.3e-84 315.1 417 45.1
Lsat_1_v5_gn_6_60661 Lactuca sativa HOM05D006138 ORTHO05D007778 1.8e-83 313.9 417 44.8
Lj6A392G25 Lonicera japonica HOM05D006138 ORTHO05D007778 2.4e-83 313.5 452 42.0
Peaxi162Scf00047g00230 Petunia axillaris HOM05D006138 ORTHO05D007778 7.0e-83 312.0 404 44.3
Sabra16G0201200 Salix brachista HOM05D006138 ORTHO05D007778 4.5e-82 309.3 527 38.7
PSO017G1394 Papaver somniferum HOM05D006138 ORTHO05D007778 1.0e-81 308.1 413 42.4
CAN.G1565.12 Capsicum annuum HOM05D006138 ORTHO05D007778 1.3e-81 307.8 355 47.6
Cc03_g08330 Coffea canephora HOM05D006138 ORTHO05D007778 2.9e-81 306.6 426 40.8
CsaV3_3G010820 Cucumis sativus L. HOM05D006138 ORTHO05D007778 2.9e-81 306.6 412 43.2
DCAR_026640 Daucus carota HOM05D006138 ORTHO05D007778 1.1e-80 304.7 378 44.4
Sed0019269 Sechium edule HOM05D006138 ORTHO05D007778 4.3e-80 302.8 411 42.3
HanXRQChr07g0185891 Helianthus annuus HOM05D006138 ORTHO05D007778 1.0e-78 298.1 417 43.2
Lj6A407G21 Lonicera japonica HOM05D006138 ORTHO05D007778 2.3e-78 297.0 452 41.2
Nitab4.5_0000401g0220 Nicotiana tabacum HOM05D006138 ORTHO05D007778 4.0e-78 296.2 418 42.3
Solyc09g092180.3 Solanum lycopersicum HOM05D006138 ORTHO05D007778 2.9e-76 290.0 404 41.6
Sopen09g035050 Solanum pennellii HOM05D006138 ORTHO05D007778 6.4e-76 288.9 404 41.6
PGSC0003DMG400026422 Solanum tuberosum HOM05D006138 ORTHO05D007778 8.3e-76 288.5 359 44.8
PGR004G2157 Punica granatum HOM05D006138 ORTHO05D007778 1.4e-75 287.7 410 42.9
MSTRG.9735 Avicennia marina HOM05D006138 ORTHO05D007778 4.1e-75 286.2 422 39.8
Eucgr.H00039 Eucalyptus grandis HOM05D006138 ORTHO05D007778 2.0e-74 283.9 378 45.2
ClCG05G003180 Citrullus lanatus HOM05D006138 ORTHO05D007778 2.3e-73 280.4 409 40.6
Ca_16395_v3 Cicer arietinum L. HOM05D006138 ORTHO05D007778 4.3e-72 276.2 396 41.9
Nitab4.5_0003101g0010 Nicotiana tabacum HOM05D006138 ORTHO05D007778 5.6e-72 275.8 418 40.2
PSO063G4547 Papaver somniferum HOM05D006138 ORTHO05D007778 1.6e-71 274.2 380 42.1
SGA_v2.0_scaffold19G08768 Striga asiatica HOM05D006138 ORTHO05D007778 2.8e-71 273.5 412 39.1
SalBow8G0822 Salvia bowleyana HOM05D006138 ORTHO05D007778 2.3e-70 270.4 437 37.8
SalBow8G2056 Salvia bowleyana HOM05D006138 ORTHO05D007778 3.1e-70 270.0 437 37.8
AUR62020846 Chenopodium quinoa HOM05D006138 ORTHO05D007778 6.8e-70 268.9 388 41.8
Migut.G00745 Erythranthe guttata HOM05D006138 ORTHO05D007778 1.2e-69 268.1 416 38.2
Lj6g0009885 Lotus japonicus HOM05D006138 ORTHO05D007778 1.4e-67 261.2 416 39.9
Eucgr.L02926 Eucalyptus grandis HOM05D006138 ORTHO05D007778 2.4e-67 260.4 373 43.4
vmacro15559 Vaccinium macrocarpon HOM05D006138 ORTHO05D007778 7.0e-67 258.8 380 41.1
arahy.Tifrunner.gnm1.ann1.3M33GA Arachis hypogaea HOM05D006138 ORTHO05D007778 1.3e-65 254.6 403 39.5
Glyma.11G255500 Glycine max HOM05D006138 ORTHO05D007778 1.7e-65 254.2 411 38.4
CSS0014339 Camellia sinensis var. sinensis HOM05D006138 ORTHO05D007778 2.3e-65 253.8 264 49.6
QL10p052654 Quercus lobata HOM05D006138 ORTHO05D007778 2.3e-65 253.8 560 34.5
VMungo1383G1063 Vigna mungo HOM05D000127 ORTHO05D000243 2.3e-65 253.8 366 41.3
arahy.Tifrunner.gnm1.ann1.HYZ2KB Arachis hypogaea HOM05D006138 ORTHO05D007778 5.1e-65 252.7 403 39.0
CSS0015025 Camellia sinensis var. sinensis HOM05D006138 ORTHO05D007778 8.6e-65 251.9 264 49.6
Phvul.001G267400 Phaseolus vulgaris HOM05D006138 ORTHO05D007778 7.3e-64 248.8 413 38.3
Psat5g102360 Pisum sativum HOM05D006138 ORTHO05D007778 2.1e-63 247.3 407 37.8
Aqoxy2G04005 Aquilegia oxysepala HOM05D006138 ORTHO05D007778 2.8e-63 246.9 409 38.6
ECA233G3278 Erigeron canadensis HOM05D006138 ORTHO05D007778 2.3e-62 243.8 385 37.9
Aqoxy360s001 Aquilegia oxysepala HOM05D006138 ORTHO05D007778 5.2e-62 242.7 360 41.9
Gohir.A12G078622 Gossypium hirsutum HOM05D006138 ORTHO05D007778 9.2e-59 231.9 281 48.4
CDE05G2116 Ceratophyllum demersum HOM05D006138 ORTHO05D007778 1.6e-58 231.1 348 40.2
Ah.04g149320 Amaranthus hybridus HOM05D006138 ORTHO05D007778 2.1e-58 230.7 401 37.7
Lalb_Chr23g0278421 Lupinus albus HOM05D006138 ORTHO05D007778 3.0e-57 226.9 360 39.4
AUR62018570 Chenopodium quinoa HOM05D006138 ORTHO05D007778 1.6e-55 221.1 386 38.3
EL10Ac3g07466 Beta vulgaris HOM05D006138 ORTHO05D007778 5.8e-53 212.6 385 37.7
HPP92_023190 Vanilla planifolia HOM05D006138 ORTHO05D007778 8.7e-49 198.7 411 35.3
Ciclev10005758m.g Citrus clementina HOM05D006138 ORTHO05D007778 6.9e-46 189.1 170 53.5
Gohir.D12G210200 Gossypium hirsutum HOM05D006138 ORTHO05D007778 7.6e-45 185.7 244 46.7
RcHm_v2.0_Chr4g0414021 Rosa chinensis HOM05D006138 ORTHO05D007778 4.9e-44 183.0 294 42.2
Haze_11642 Corylus avellana HOM05D006138 ORTHO05D007778 1.4e-43 181.4 383 36.0
unitig_37.g12032 Utricularia gibba HOM05D006138 ORTHO05D007778 2.4e-43 180.6 256 40.2
FAN22G1553 Fragaria x ananassa HOM05D006138 ORTHO05D007778 1.5e-40 171.4 298 39.9
Glyma.18G001700 Glycine max HOM05D006138 ORTHO05D007778 1.9e-40 171.0 224 42.9
Os04g0379800 Oryza sativa ssp. japonica HOM05D006138 ORTHO05D007778 7.3e-40 169.1 416 31.2
Hma1.2p1_0017F.1_g011170 Hydrangea macrophylla HOM05D006138 ORTHO05D007778 1.3e-39 168.3 248 44.0
FvH4_4g13460 Fragaria vesca HOM05D006138 ORTHO05D007778 1.6e-39 167.9 298 39.6
FAN12G1205 Fragaria x ananassa HOM05D006138 ORTHO05D007778 2.1e-39 167.5 298 39.6
Prupe.1G161100 Prunus persica HOM05D006138 ORTHO05D007778 2.1e-39 167.5 264 41.3
TPR.G24162 Trifolium pratense HOM05D006138 ORTHO05D007778 1.3e-36 158.3 254 37.0
Duzib268G1255 Durio zibethinus HOM05D006138 ORTHO05D007778 3.8e-36 156.8 147 55.1
Oeu025032.1 Olea europaea HOM05D006138 ORTHO05D007778 4.2e-35 153.3 138 53.6
MELO3C006299.2 Cucumis melo HOM05D006138 ORTHO05D007778 3.5e-34 150.2 253 37.9
Hund24401 Selenicereus undatus HOM05D006138 ORTHO05D007778 3.5e-34 150.2 254 37.8
RcHm_v2.0_Chr4g0414071 Rosa chinensis HOM05D006138 ORTHO05D007778 1.2e-21 108.6 125 48.8
Zm00001eb085830 Zea mays HOM05D006138 ORTHO05D007778 2.5e-19 100.9 412 24.8
Actinidia16488 Actinidia chinensis HOM05D006138 ORTHO05D007778 3.2e-19 100.5 94 53.2
FAN07G2199 Fragaria x ananassa HOM05D006138 ORTHO05D007778 1.6e-18 98.2 236 33.5
Nitab4.5_0001652g0120 Nicotiana tabacum HOM05D006138 ORTHO05D007778 7.9e-18 95.9 263 31.2
Nn1g00061 Nelumbo nucifera HOM05D006138 ORTHO05D007778 1.4e-14 85.1 132 37.9
Duzib268G0476 Durio zibethinus HOM05D006138 ORTHO05D007778 1.8e-14 84.7 143 37.1
Hund29337 Selenicereus undatus HOM05D006138 ORTHO05D007778 1.8e-14 84.7 122 37.7
Hund29338 Selenicereus undatus HOM05D006138 ORTHO05D007778 1.8e-14 84.7 122 37.7
Duzib268G0147 Durio zibethinus HOM05D006138 ORTHO05D007778 1.5e-13 81.6 118 42.4
Mapoly0008s0044 Marchantia polymorpha HOM05D006138 ORTHO05D007778 1.3e-12 78.6 460 22.0
BolC5t33834H Brassica oleracea HOM05D006138 ORTHO05D032537 1.1e-11 75.5 75 56.0
Phvul.001G135400 Phaseolus vulgaris HOM05D006138 ORTHO05D007778 3.2e-11 73.9 96 43.8
C02p59990 Brassica napus HOM05D006138 ORTHO05D032537 7.2e-11 72.8 79 53.2
BcaC09g47899 Brassica carinata HOM05D006138 ORTHO05D032537 9.4e-11 72.4 75 53.3
AL3G38890 Arabidopsis lyrata HOM05D005307 ORTHO05D006695 4.6e-10 70.1 112 47.3
AT3G23900 Arabidopsis thaliana HOM05D005307 ORTHO05D006695 6.1e-10 69.7 112 48.2
FAN17G0457 Fragaria x ananassa HOM05D006138 ORTHO05D007778 3.9e-09 67.0 128 38.3
Carub.0003s2420 Capsella rubella HOM05D005307 ORTHO05D006695 1.3e-07 62.0 111 44.1
C04p64520 Brassica napus HOM05D009099 ORTHO05D014276 8.2e-07 59.3 85 47.1
SHI01022 Sapria himalayana HOM05D006138 ORTHO05D007778 2.4e-06 57.8 112 33.9


User provided reference genes

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