Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G23490 Arabidopsis thaliana HOM05D006656 ORTHO05D008208 7.6e-89 330.5 169 100.0
AL3G38180 Arabidopsis lyrata HOM05D006656 ORTHO05D008208 8.4e-88 327.0 169 98.8
Carub.0003s2372 Capsella rubella HOM05D006656 ORTHO05D008208 1.9e-84 315.8 169 95.3
A07p08920 Brassica napus HOM05D006656 ORTHO05D008208 3.7e-83 311.6 169 93.5
BraA07t28683Z Brassica rapa HOM05D006656 ORTHO05D008208 4.8e-83 311.2 169 92.9
Thhalv10021585m.g Eutrema salsugineum HOM05D006656 ORTHO05D008208 4.8e-83 311.2 169 93.5
C07p13760 Brassica napus HOM05D006656 ORTHO05D008208 1.4e-82 309.7 169 92.3
Sp3g21170 Schrenkiella parvula HOM05D006656 ORTHO05D008208 2.4e-82 308.9 169 92.9
SpUn0047_0050 Schrenkiella parvula HOM05D006656 ORTHO05D008208 2.4e-82 308.9 169 92.9
BcaC06g35534 Brassica carinata HOM05D006656 ORTHO05D008208 6.9e-82 307.4 169 91.7
BolC7t41871H Brassica oleracea HOM05D006656 ORTHO05D008208 6.9e-82 307.4 169 91.7
BcaB06g26499 Brassica carinata HOM05D006656 ORTHO05D008208 7.7e-81 303.9 162 93.8
Aa31LG8G9940 Aethionema arabicum HOM05D006656 ORTHO05D008208 5.7e-68 261.2 151 86.1
THA.LOC104804764 Tarenaya hassleriana HOM05D006656 ORTHO05D008208 2.2e-67 259.2 169 76.3
MD13G1218700 Malus domestica HOM05D006656 ORTHO05D008208 5.9e-65 251.1 161 77.6
Ciclev10006077m.g Citrus clementina HOM05D006656 ORTHO05D008208 1.0e-64 250.4 159 77.4
QL06p020043 Quercus lobata HOM05D006656 ORTHO05D008208 8.5e-64 247.3 158 75.9
Gohir.A09G228200 Gossypium hirsutum HOM05D006656 ORTHO05D008208 1.4e-63 246.5 162 73.5
Lj6g0027143 Lotus japonicus HOM05D006656 ORTHO05D008208 1.4e-63 246.5 159 76.7
Nn1g02903 Nelumbo nucifera HOM05D006656 ORTHO05D008208 1.4e-63 246.5 159 76.1
HanXRQChr04g0115371 Helianthus annuus HOM05D006656 ORTHO05D008208 1.9e-63 246.1 163 73.6
Dinv29827 Davidia involucrata HOM05D006656 ORTHO05D008208 2.5e-63 245.7 159 75.5
Hma1.2p1_0112F.1_g054500 Hydrangea macrophylla HOM05D006656 ORTHO05D008208 2.5e-63 245.7 163 76.1
TWI09G0269 Tripterygium wilfordii HOM05D006656 ORTHO05D008208 4.2e-63 245.0 155 76.1
TWI09G1522 Tripterygium wilfordii HOM05D006656 ORTHO05D008208 4.2e-63 245.0 155 76.1
CAN.G220.47 Capsicum annuum HOM05D006656 ORTHO05D008208 5.5e-63 244.6 158 76.6
Cpa.g.sc44.21 Carica papaya HOM05D006656 ORTHO05D008208 5.5e-63 244.6 158 74.7
Gohir.D09G229300 Gossypium hirsutum HOM05D006656 ORTHO05D008208 7.2e-63 244.2 163 72.4
Gorai.006G252000 Gossypium raimondii HOM05D006656 ORTHO05D008208 7.2e-63 244.2 163 72.4
TPR.G25151 Trifolium pratense HOM05D006656 ORTHO05D008208 7.2e-63 244.2 157 76.4
Atru.chr4.1959 Acer truncatum HOM05D006656 ORTHO05D008208 1.2e-62 243.4 154 77.9
arahy.Tifrunner.gnm1.ann1.CLZM2Q Arachis hypogaea HOM05D006656 ORTHO05D008208 1.2e-62 243.4 159 76.1
RcHm_v2.0_Chr4g0394701 Rosa chinensis HOM05D006656 ORTHO05D008208 1.2e-62 243.4 160 74.4
Aqoxy2G03715 Aquilegia oxysepala HOM05D006656 ORTHO05D008208 1.6e-62 243.0 157 74.5
Dinv27090 Davidia involucrata HOM05D006656 ORTHO05D008208 2.1e-62 242.7 155 74.8
FvH4_4g04220 Fragaria vesca HOM05D006656 ORTHO05D008208 2.1e-62 242.7 160 75.0
FAN12G3008 Fragaria x ananassa HOM05D006656 ORTHO05D008208 2.1e-62 242.7 160 75.0
Nitab4.5_0013448g0010 Nicotiana tabacum HOM05D006656 ORTHO05D008208 2.1e-62 242.7 158 75.3
Thecc.04G260300 Theobroma cacao HOM05D006656 ORTHO05D008208 2.1e-62 242.7 162 72.8
CiPaw.01G180600 Carya illinoinensis HOM05D006656 ORTHO05D008208 2.7e-62 242.3 161 75.2
Hund11920 Selenicereus undatus HOM05D006656 ORTHO05D008208 2.7e-62 242.3 159 74.2
Solyc09g090430.3 Solanum lycopersicum HOM05D006656 ORTHO05D008208 3.6e-62 241.9 158 75.3
Sopen09g033350 Solanum pennellii HOM05D006656 ORTHO05D008208 3.6e-62 241.9 158 75.3
PGSC0003DMG400017160 Solanum tuberosum HOM05D006656 ORTHO05D008208 3.6e-62 241.9 158 75.3
Eucgr.H02989 Eucalyptus grandis HOM05D006656 ORTHO05D008208 4.7e-62 241.5 163 73.6
Manes.13G093430 Manihot esculenta HOM05D006656 ORTHO05D008208 4.7e-62 241.5 154 76.6
Prupe.1G045500 Prunus persica HOM05D006656 ORTHO05D008208 4.7e-62 241.5 161 74.5
Peaxi162Scf00602g00515 Petunia axillaris HOM05D006656 ORTHO05D008208 6.1e-62 241.1 160 73.1
Lsat_1_v5_gn_1_75161 Lactuca sativa HOM05D006656 ORTHO05D008208 8.0e-62 240.7 158 75.3
Medtr1g041795 Medicago truncatula HOM05D006656 ORTHO05D008208 8.0e-62 240.7 157 74.5
SalBow3G1837 Salvia bowleyana HOM05D006656 ORTHO05D008208 1.0e-61 240.4 160 75.6
Ca_12138_v3 Cicer arietinum L. HOM05D006656 ORTHO05D008208 1.4e-61 240.0 154 74.7
Nitab4.5_0001425g0100 Nicotiana tabacum HOM05D006656 ORTHO05D008208 1.8e-61 239.6 160 73.8
MSTRG.4156 Avicennia marina HOM05D006656 ORTHO05D008208 3.0e-61 238.8 155 73.5
CSS0031602 Camellia sinensis var. sinensis HOM05D006656 ORTHO05D008208 3.0e-61 238.8 165 71.5
HanXRQChr01g0022881 Helianthus annuus HOM05D006656 ORTHO05D008208 3.0e-61 238.8 162 71.6
COL.COLO4_15934 Corchorus olitorius HOM05D006656 ORTHO05D008208 5.2e-61 238.0 155 73.5
Migut.G00494 Erythranthe guttata HOM05D006656 ORTHO05D008208 6.7e-61 237.7 164 72.0
MBI07_g22362_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 1.1e-60 236.9 160 73.8
MBI14_g30459_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 1.1e-60 236.9 160 73.1
Sed0021014 Sechium edule HOM05D006656 ORTHO05D008208 1.5e-60 236.5 159 73.6
CsaV3_3G011860 Cucumis sativus L. HOM05D006656 ORTHO05D008208 2.0e-60 236.1 159 73.6
Glyma.10G005200 Glycine max HOM05D006656 ORTHO05D008208 2.6e-60 235.7 155 74.8
DCAR_030758 Daucus carota HOM05D000730 ORTHO05D008208 5.7e-60 234.6 154 72.1
ECA248G3216 Erigeron canadensis HOM05D006656 ORTHO05D008208 5.7e-60 234.6 159 73.0
Lalb_Chr03g0037311 Lupinus albus HOM05D006656 ORTHO05D008208 7.4e-60 234.2 158 72.8
Sc25g0003620 Simmondsia chinensis HOM05D006656 ORTHO05D008208 7.4e-60 234.2 162 71.6
ClCG05G004140 Citrullus lanatus HOM05D006656 ORTHO05D008208 9.7e-60 233.8 159 71.7
Potri.010G068200 Populus trichocarpa HOM05D006656 ORTHO05D008208 1.3e-59 233.4 154 74.0
HPP92_001387 Vanilla planifolia HOM05D006656 ORTHO05D008208 1.7e-59 233.0 157 73.9
Phvul.007G275000 Phaseolus vulgaris HOM05D006656 ORTHO05D008208 2.2e-59 232.6 154 75.3
CANSAT78G1635 Cannabis sativa HOM05D006656 ORTHO05D008208 3.7e-59 231.9 157 72.0
PGR004G1080 Punica granatum HOM05D006656 ORTHO05D008208 3.7e-59 231.9 158 72.8
VMungo0720G2665 Vigna mungo HOM05D006656 ORTHO05D008208 8.2e-59 230.7 146 78.1
EL10Ac3g04969 Beta vulgaris HOM05D006656 ORTHO05D008208 1.1e-58 230.3 159 70.4
Actinidia39917 Actinidia chinensis HOM05D006656 ORTHO05D008208 3.1e-58 228.8 157 71.3
PSO447G0273 Papaver somniferum HOM05D006656 ORTHO05D008208 4.1e-58 228.4 154 72.1
Sabra10G0038900 Salix brachista HOM05D006656 ORTHO05D008208 4.1e-58 228.4 146 75.3
PSO210G7176 Papaver somniferum HOM05D006656 ORTHO05D008208 5.3e-58 228.0 154 71.4
FAN17G2925 Fragaria x ananassa HOM05D006656 ORTHO05D008208 7.0e-58 227.6 158 72.8
arahy.Tifrunner.gnm1.ann1.DD5QG4 Arachis hypogaea HOM05D006656 ORTHO05D008208 9.1e-58 227.3 151 74.2
Rhsim02G0042500 Rhododendron simsii HOM05D006656 ORTHO05D008208 1.6e-57 226.5 150 72.7
CDE02G2281 Ceratophyllum demersum HOM05D006656 ORTHO05D008208 2.6e-57 225.7 152 73.0
Os10g0471300 Oryza sativa ssp. japonica HOM05D006656 ORTHO05D008208 5.9e-57 224.6 155 69.0
Psat6g137160 Pisum sativum HOM05D006656 ORTHO05D008208 5.9e-57 224.6 146 74.7
arahy.Tifrunner.gnm1.ann1.C3VAXP Arachis hypogaea HOM05D006656 ORTHO05D008208 1.0e-56 223.8 151 72.8
Ah.13g072350 Amaranthus hybridus HOM05D006656 ORTHO05D008208 1.7e-56 223.0 152 71.7
AL242U10020 Arabidopsis lyrata HOM05D006656 ORTHO05D008208 2.2e-56 222.6 115 98.3
AUR62002173 Chenopodium quinoa HOM05D006656 ORTHO05D008208 3.8e-56 221.9 144 75.7
ATR0736G110 Amborella trichopoda HOM05D006656 ORTHO05D008208 1.1e-55 220.3 156 67.3
vmacro15465 Vaccinium macrocarpon HOM05D006656 ORTHO05D008208 1.9e-55 219.5 141 75.2
MBI07_g15427_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 3.2e-55 218.8 160 70.0
AUR62015536 Chenopodium quinoa HOM05D006656 ORTHO05D008208 2.7e-54 215.7 178 63.5
SGA_v2.0_scaffold67G22735 Striga asiatica HOM05D006656 ORTHO05D008208 6.1e-54 214.5 192 59.9
Zm00001eb046120 Zea mays HOM05D006656 ORTHO05D008208 1.4e-53 213.4 160 68.1
Lj3A676G52 Lonicera japonica HOM05D006656 ORTHO05D008208 2.6e-52 209.1 176 64.2
Pp3c19_11440 Physcomitrium patens HOM05D006656 ORTHO05D008208 3.2e-47 192.2 157 57.3
vmacro15466 Vaccinium macrocarpon HOM05D006656 ORTHO05D008208 6.1e-46 188.0 168 57.7
Mapoly0080s0009 Marchantia polymorpha HOM05D006656 ORTHO05D008208 1.3e-43 180.3 151 58.9
Cc03_g05940 Coffea canephora HOM05D006656 ORTHO05D008208 2.9e-40 169.1 94 84.0
Cfa014756 Carpinus fangiana HOM05D006656 ORTHO05D008208 6.6e-40 167.9 116 73.3
GSVIVG01027874001 Vitis vinifera HOM05D006656 ORTHO05D008208 8.6e-40 167.5 94 81.9
Duzib151G0018 Durio zibethinus HOM05D006656 ORTHO05D008208 1.9e-39 166.4 120 68.3
AagrBONN_evm.TU.Sc2ySwM_344.2747 Anthoceros agrestis HOM05D006656 ORTHO05D008208 2.5e-39 166.0 159 52.8
MELO3C006399.2 Cucumis melo HOM05D000603 ORTHO05D003510 2.8e-38 162.5 151 57.0
HPP92_000029 Vanilla planifolia HOM05D006656 ORTHO05D008208 1.8e-37 159.8 163 54.6
CBR_g36666 Chara braunii HOM05D006656 ORTHO05D008208 5.2e-37 158.3 157 50.3
PRCOL_00005673 Prasinoderma coloniale HOM05D006656 ORTHO05D008208 7.0e-34 147.9 155 45.2
CBR_g71972 Chara braunii HOM05D006656 ORTHO05D008208 1.6e-33 146.7 155 49.0
Haze_11433 Corylus avellana HOM05D006656 ORTHO05D008208 7.8e-33 144.4 261 39.5
SMO271G0046 Selaginella moellendorffii HOM05D006656 ORTHO05D008208 1.4e-26 123.6 141 43.3
arahy.Tifrunner.gnm1.ann1.USJ12Z Arachis hypogaea HOM05D006656 ORTHO05D008208 6.0e-25 118.2 88 69.3
Nitab4.5_0000014g0170 Nicotiana tabacum HOM05D006656 ORTHO05D008208 4.4e-20 102.1 77 66.2
BcaB02g10054 Brassica carinata HOM05D006656 ORTHO05D008208 8.3e-19 97.8 64 75.0
BcaB06g27105 Brassica carinata HOM05D006656 ORTHO05D008208 9.2e-18 94.4 64 71.9
BolC2t11169H Brassica oleracea HOM05D006656 ORTHO05D008208 1.0e-16 90.9 55 78.2
BcaC09g51699 Brassica carinata HOM05D006656 ORTHO05D008208 3.0e-16 89.4 45 88.9
AagrBONN_evm.TU.Sc2ySwM_344.2745 Anthoceros agrestis HOM05D006656 ORTHO05D008208 3.9e-16 89.0 93 53.8
Gohir.A02G041301 Gossypium hirsutum HOM05D006656 ORTHO05D008208 1.4e-13 80.5 63 58.7
C05p47480 Brassica napus HOM05D006656 ORTHO05D008208 8.9e-13 77.8 37 94.6
C03p47720 Brassica napus HOM05D006656 ORTHO05D008208 5.8e-12 75.1 37 89.2
MCO04G243 Micromonas commoda HOM05D006656 ORTHO05D008208 2.7e-09 66.2 150 30.7
HPP92_027915 Vanilla planifolia HOM05D003501 ORTHO05D004388 2.3e-08 63.2 63 57.1


User provided reference genes

Program Settings