Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G23370 Arabidopsis thaliana HOM05D008307 ORTHO05D010374 0.0e+00 1467.2 812 100.0
AL3G38030 Arabidopsis lyrata HOM05D008307 ORTHO05D010374 0.0e+00 1195.6 817 82.6
Thhalv10020149m.g Eutrema salsugineum HOM05D008307 ORTHO05D010374 5.1e-239 831.6 817 58.8
BraA07t28701Z Brassica rapa HOM05D008307 ORTHO05D010374 1.7e-165 587.4 823 47.4
A07p09070 Brassica napus HOM05D008307 ORTHO05D010374 3.7e-165 586.3 824 47.3
C07p14040 Brassica napus HOM05D008307 ORTHO05D010374 3.5e-155 553.1 819 46.3
BolC7t41901H Brassica oleracea HOM05D008307 ORTHO05D010374 2.8e-152 543.5 819 45.9
BcaC06g35512 Brassica carinata HOM05D008307 ORTHO05D010374 1.7e-146 524.2 817 44.7
CARHR099340 Cardamine hirsuta HOM05D008307 ORTHO05D010374 4.4e-118 429.9 369 62.6
THA.LOC104822237 Tarenaya hassleriana HOM05D008307 ORTHO05D010374 2.4e-111 407.5 834 38.2
Carub.0003s2363 Capsella rubella HOM05D008307 ORTHO05D010374 4.3e-105 386.7 237 80.2
Carub.0003s2362 Capsella rubella HOM05D008307 ORTHO05D010374 1.3e-80 305.4 336 67.0
QL06p018536 Quercus lobata HOM05D008307 ORTHO05D010374 3.4e-70 270.8 283 49.8
RcHm_v2.0_Chr4g0393941 Rosa chinensis HOM05D008307 ORTHO05D010374 1.3e-69 268.9 306 45.8
Cfa014722 Carpinus fangiana HOM05D008307 ORTHO05D010374 2.2e-69 268.1 290 47.6
Haze_11405 Corylus avellana HOM05D008307 ORTHO05D010374 2.9e-69 267.7 291 48.1
TWI73G0959 Tripterygium wilfordii HOM05D008307 ORTHO05D010374 5.2e-66 256.9 317 45.7
Dinv29844 Davidia involucrata HOM05D008307 ORTHO05D010374 8.8e-66 256.1 452 36.9
Potri.010G070001 Populus trichocarpa HOM05D008307 ORTHO05D010374 3.3e-65 254.2 380 39.2
FvH4_4g03920 Fragaria vesca HOM05D008307 ORTHO05D010374 2.2e-64 251.5 302 43.4
FAN22G1022 Fragaria x ananassa HOM05D000478 ORTHO05D010374 1.4e-63 248.8 308 42.2
MD16G1220900 Malus domestica HOM05D008307 ORTHO05D010374 2.9e-61 241.1 365 39.5
TAR365G0480 Trochodendron aralioides HOM05D008307 ORTHO05D010374 1.2e-59 235.7 292 43.8
FAN17G2370 Fragaria x ananassa HOM05D000478 ORTHO05D010374 4.4e-57 227.3 293 41.6
Migut.N00284 Erythranthe guttata HOM05D008307 ORTHO05D010374 7.5e-57 226.5 372 37.6
Sopen09g033190 Solanum pennellii HOM05D008307 ORTHO05D010374 6.3e-56 223.4 548 31.9
PGSC0003DMG400017215 Solanum tuberosum HOM05D008307 ORTHO05D010374 1.4e-55 222.2 374 36.6
Solyc09g090290.3 Solanum lycopersicum HOM05D008307 ORTHO05D010374 3.1e-55 221.1 547 31.1
Actinidia35796 Actinidia chinensis HOM05D008307 ORTHO05D010374 1.6e-54 218.8 864 27.4
Rhsim04G0177000 Rhododendron simsii HOM05D008307 ORTHO05D010374 2.7e-54 218.0 325 41.2
COL.COLO4_15896 Corchorus olitorius HOM05D008307 ORTHO05D010374 6.5e-53 213.4 537 32.6
MBI07_g31095_MAGBIO Magnolia biondii HOM05D008307 ORTHO05D010374 2.1e-51 208.4 285 42.8
DCAR_024261 Daucus carota HOM05D008307 ORTHO05D010374 2.7e-51 208.0 287 39.7
DCAR_027325 Daucus carota HOM05D008307 ORTHO05D010374 2.7e-51 208.0 287 40.8
CSS0044876 Camellia sinensis var. sinensis HOM05D008307 ORTHO05D010374 4.7e-51 207.2 211 52.1
vmacro08510 Vaccinium macrocarpon HOM05D008307 ORTHO05D010374 5.2e-50 203.8 302 41.1
Nitab4.5_0000044g0470 Nicotiana tabacum HOM05D008307 ORTHO05D010374 8.8e-50 203.0 300 39.3
Peaxi162Scf00041g00209 Petunia axillaris HOM05D008307 ORTHO05D010374 3.4e-49 201.1 367 34.3
Aqoxy7G00920 Aquilegia oxysepala HOM05D008307 ORTHO05D010374 5.7e-49 200.3 323 39.0
Nitab4.5_0007280g0010 Nicotiana tabacum HOM05D008307 ORTHO05D010374 1.2e-46 192.6 309 38.5
PGR031G2080 Punica granatum HOM05D008307 ORTHO05D010374 1.6e-46 192.2 221 43.4
CAN.G220.11 Capsicum annuum HOM05D008307 ORTHO05D010374 5.9e-46 190.3 501 29.7
ATR0736G143 Amborella trichopoda HOM05D008307 ORTHO05D010374 1.9e-44 185.3 305 37.7
FAN12G4262 Fragaria x ananassa HOM05D000478 ORTHO05D010374 4.0e-42 177.6 220 44.5
SGA_v2.0_scaffold31G12662 Striga asiatica HOM05D008307 ORTHO05D010374 7.8e-38 163.3 546 28.8
Thecc.04G258000 Theobroma cacao HOM05D008307 ORTHO05D010374 5.4e-31 140.6 156 48.7
Prupe.1G041400 Prunus persica HOM05D008307 ORTHO05D010374 2.0e-30 138.7 168 42.9
SEGI_00673 Sequoiadendron giganteum HOM05D008307 ORTHO05D010374 1.3e-29 136.0 290 34.5
Cc03_g05710 Coffea canephora HOM05D008307 ORTHO05D010374 6.8e-26 123.6 139 42.4
Gorai.011G175900 Gossypium raimondii HOM05D008307 ORTHO05D010374 1.2e-25 122.9 244 34.8
Gohir.D10G155880 Gossypium hirsutum HOM05D008307 ORTHO05D010374 7.5e-25 120.2 244 34.0
Cc03_g05700 Coffea canephora HOM05D008307 ORTHO05D010374 1.0e-21 109.8 168 43.5
SMO329G0060 Selaginella moellendorffii HOM05D008307 ORTHO05D010374 6.0e-14 84.0 209 30.6
Pp3c6_16530 Physcomitrium patens HOM05D008307 ORTHO05D010374 5.6e-12 77.4 319 23.8
SMO165G0083 Selaginella moellendorffii HOM05D008307 ORTHO05D010374 3.4e-09 68.2 143 32.2
AagrBONN_evm.TU.Sc2ySwM_369.432 Anthoceros agrestis HOM05D008307 ORTHO05D010374 1.4e-07 62.8 275 24.0
TAR365G0134 Trochodendron aralioides HOM05D008757 ORTHO05D010583 7.1e-07 60.5 142 28.9


User provided reference genes

Program Settings