Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G23255 Arabidopsis thaliana HOM05D006411 ORTHO05D007563 3.0e-125 451.8 226 100.0
AL3G37910 Arabidopsis lyrata HOM05D006411 ORTHO05D007563 1.7e-112 409.5 223 90.6
Carub.0003s2350 Capsella rubella HOM05D006411 ORTHO05D007563 2.4e-106 389.0 223 86.1
BcaB06g26470 Brassica carinata HOM05D006411 ORTHO05D007563 1.7e-99 366.3 227 81.5
Sp3g20930 Schrenkiella parvula HOM05D006411 ORTHO05D007563 1.4e-98 363.2 227 81.1
BraA07t28715Z Brassica rapa HOM05D006411 ORTHO05D007563 4.6e-97 358.2 226 81.4
Thhalv10021467m.g Eutrema salsugineum HOM05D006411 ORTHO05D007563 6.0e-97 357.8 227 81.1
Aa31LG8G9800 Aethionema arabicum HOM05D006411 ORTHO05D007563 2.3e-96 355.9 232 78.4
A07p09200 Brassica napus HOM05D006411 ORTHO05D007563 3.0e-96 355.5 227 80.2
BolC7t41915H Brassica oleracea HOM05D006411 ORTHO05D007563 6.2e-94 347.8 225 78.7
C07p14190 Brassica napus HOM05D006411 ORTHO05D007563 8.1e-94 347.4 226 77.9
CARHR099210 Cardamine hirsuta HOM05D006411 ORTHO05D007563 5.2e-85 318.2 193 82.4
THA.LOC104808624 Tarenaya hassleriana HOM05D006411 ORTHO05D007563 2.1e-81 306.2 231 68.4
Carub.0137s0001 Capsella rubella HOM05D006411 ORTHO05D007563 1.3e-80 303.5 172 86.6
TWI18G1006 Tripterygium wilfordii HOM05D006411 ORTHO05D007563 1.6e-70 270.0 237 58.6
Atru.chr12.1401 Acer truncatum HOM05D006411 ORTHO05D007563 3.6e-70 268.9 235 61.3
QL03p049668 Quercus lobata HOM05D006411 ORTHO05D007563 4.8e-70 268.5 242 59.5
TAR371G0942 Trochodendron aralioides HOM05D006411 ORTHO05D007563 1.4e-69 266.9 238 60.9
Dinv09212 Davidia involucrata HOM05D006411 ORTHO05D007563 1.8e-69 266.5 231 61.0
Duzib132G0393 Durio zibethinus HOM05D006411 ORTHO05D007563 2.0e-68 263.1 238 57.6
GSVIVG01004943001 Vitis vinifera HOM05D006411 ORTHO05D007563 2.0e-68 263.1 238 59.7
Haze_12492 Corylus avellana HOM05D006411 ORTHO05D007563 2.6e-68 262.7 236 58.1
Sabra03G0118900 Salix brachista HOM05D006411 ORTHO05D007563 1.7e-67 260.0 242 57.9
Prupe.1G216800 Prunus persica HOM05D006411 ORTHO05D007563 2.2e-67 259.6 235 57.0
Cfa009441 Carpinus fangiana HOM05D006411 ORTHO05D007563 2.4e-66 256.1 234 57.3
Manes.09G187200 Manihot esculenta HOM05D006411 ORTHO05D007563 3.2e-66 255.8 238 58.4
MD16G1129800 Malus domestica HOM05D006411 ORTHO05D007563 7.1e-66 254.6 234 56.4
Actinidia09598 Actinidia chinensis HOM05D006411 ORTHO05D007563 9.3e-66 254.2 234 59.4
Nn3g20757 Nelumbo nucifera HOM05D006411 ORTHO05D007563 4.6e-65 251.9 221 58.4
RhsimUnG0101400 Rhododendron simsii HOM05D006411 ORTHO05D007563 1.0e-64 250.8 214 61.2
Nn1g07843 Nelumbo nucifera HOM05D006411 ORTHO05D007563 1.3e-64 250.4 245 55.1
FAN17G2521 Fragaria x ananassa HOM05D006411 ORTHO05D007563 1.8e-64 250.0 234 54.3
Solyc12g016210.2 Solanum lycopersicum HOM05D006411 ORTHO05D007563 3.0e-64 249.2 236 56.8
Sopen12g008000 Solanum pennellii HOM05D006411 ORTHO05D007563 3.0e-64 249.2 236 56.8
FvH4_4g22791 Fragaria vesca HOM05D006411 ORTHO05D007563 3.9e-64 248.8 234 54.3
Gohir.A01G141100 Gossypium hirsutum HOM05D006411 ORTHO05D007563 3.9e-64 248.8 241 56.8
Migut.K01066 Erythranthe guttata HOM05D006411 ORTHO05D007563 5.1e-64 248.4 231 58.0
Thecc.02G193900 Theobroma cacao HOM05D006411 ORTHO05D007563 5.1e-64 248.4 206 62.1
RcHm_v2.0_Chr4g0429021 Rosa chinensis HOM05D006411 ORTHO05D007563 8.7e-64 247.7 234 54.3
MD13G1129600 Malus domestica HOM05D006411 ORTHO05D007563 1.9e-63 246.5 233 54.9
CANSAT01G2250 Cannabis sativa HOM05D006411 ORTHO05D007563 2.5e-63 246.1 239 56.9
Gorai.002G163700 Gossypium raimondii HOM05D006411 ORTHO05D007563 4.3e-63 245.4 241 56.4
Oeu044509.2 Olea europaea HOM05D006411 ORTHO05D007563 2.8e-62 242.7 233 56.7
CSS0035608 Camellia sinensis var. sinensis HOM05D006411 ORTHO05D007563 8.1e-62 241.1 240 57.1
FAN12G0338 Fragaria x ananassa HOM05D002780 ORTHO05D003254 1.1e-61 240.7 231 53.2
SalBow2G2156 Salvia bowleyana HOM05D006411 ORTHO05D007563 1.8e-61 240.0 237 55.3
Sed0009782 Sechium edule HOM05D006411 ORTHO05D007563 2.4e-61 239.6 236 54.7
Lj3g0004314 Lotus japonicus HOM05D006411 ORTHO05D007563 3.1e-61 239.2 242 56.6
SalBow7G1895 Salvia bowleyana HOM05D006411 ORTHO05D007563 3.1e-61 239.2 239 54.8
Lsat_1_v5_gn_2_17720 Lactuca sativa HOM05D006411 ORTHO05D007563 4.0e-61 238.8 226 54.4
Ah.03g135590 Amaranthus hybridus HOM05D006411 ORTHO05D007563 1.2e-60 237.3 238 56.3
MSTRG.461 Avicennia marina HOM05D006411 ORTHO05D007563 1.2e-60 237.3 232 56.0
CAN.G529.4 Capsicum annuum HOM05D006411 ORTHO05D007563 1.5e-60 236.9 231 53.2
SGA_v2.0_scaffold80G25942 Striga asiatica HOM05D006411 ORTHO05D007563 1.5e-60 236.9 233 52.4
Nitab4.5_0003020g0130 Nicotiana tabacum HOM05D006411 ORTHO05D007563 2.6e-60 236.1 233 54.5
CsaV3_6G007790 Cucumis sativus L. HOM05D006411 ORTHO05D007563 7.6e-60 234.6 236 52.1
Aqoxy5G03164 Aquilegia oxysepala HOM05D006411 ORTHO05D007563 1.1e-58 230.7 214 56.5
Glyma.11G109300 Glycine max HOM05D006411 ORTHO05D007563 1.9e-58 229.9 219 57.5
Nitab4.5_0002671g0040 Nicotiana tabacum HOM05D006411 ORTHO05D007563 2.5e-58 229.6 235 52.8
Os10g0466100 Oryza sativa ssp. japonica HOM05D006411 ORTHO05D007563 3.2e-58 229.2 234 53.4
AUR62031618 Chenopodium quinoa HOM05D006411 ORTHO05D007563 5.5e-58 228.4 220 56.4
Ciclev10005785m.g Citrus clementina HOM05D006411 ORTHO05D007563 5.5e-58 228.4 235 54.0
TPR.G28023 Trifolium pratense HOM05D006411 ORTHO05D007563 7.1e-58 228.0 252 52.8
VMungo1127G0609 Vigna mungo HOM05D006411 ORTHO05D007563 9.3e-58 227.6 218 59.2
Zm00001eb222220 Zea mays HOM05D006411 ORTHO05D007563 1.6e-57 226.9 232 53.9
EL10Ac6g13598 Beta vulgaris HOM05D006411 ORTHO05D007563 4.6e-57 225.3 245 53.1
Psat7g169880 Pisum sativum HOM05D006411 ORTHO05D007563 7.9e-57 224.6 220 57.3
Actinidia34001 Actinidia chinensis HOM05D006411 ORTHO05D007563 1.8e-56 223.4 191 61.8
Hund06130 Selenicereus undatus HOM05D006411 ORTHO05D007563 1.8e-56 223.4 263 51.7
HanXRQChr17g0559141 Helianthus annuus HOM05D006411 ORTHO05D007563 2.3e-56 223.0 230 52.2
Cc11_g15120 Coffea canephora HOM05D006411 ORTHO05D007563 6.7e-56 221.5 217 54.4
SHI04127 Sapria himalayana HOM05D006411 ORTHO05D007563 8.7e-56 221.1 238 50.0
PSO349G0017 Papaver somniferum HOM05D006411 ORTHO05D007563 1.9e-55 219.9 279 47.0
PSO765G0094 Papaver somniferum HOM05D006411 ORTHO05D007563 3.3e-55 219.2 279 46.2
Ca_18949_v3 Cicer arietinum L. HOM05D001211 ORTHO05D001084 6.3e-54 214.9 211 56.9
Ca_29765_v3 Cicer arietinum L. HOM05D001211 ORTHO05D001084 6.3e-54 214.9 211 56.9
Sc11g0000150 Simmondsia chinensis HOM05D006411 ORTHO05D007563 6.3e-54 214.9 196 59.2
ATR0751G011 Amborella trichopoda HOM05D006411 ORTHO05D006707 8.2e-54 214.5 234 51.7
Lalb_Chr19g0140051 Lupinus albus HOM05D006411 ORTHO05D007563 3.4e-52 209.1 238 52.1
PGR119G0335 Punica granatum HOM05D006411 ORTHO05D007563 5.8e-52 208.4 233 51.1
ECA238G0094 Erigeron canadensis HOM05D006411 ORTHO05D007563 1.4e-50 203.8 223 50.7
Gohir.D01G132100 Gossypium hirsutum HOM05D006411 ORTHO05D007563 2.1e-49 199.9 187 57.2
CiPaw.05G102200 Carya illinoinensis HOM05D006411 ORTHO05D007563 7.9e-49 198.0 232 49.6
SEGI_29411 Sequoiadendron giganteum HOM05D006411 ORTHO05D007563 1.3e-48 197.2 225 47.6
HPP92_007040 Vanilla planifolia HOM05D006411 ORTHO05D007563 1.5e-47 193.7 214 49.5
Phvul.011G018400 Phaseolus vulgaris HOM05D006411 ORTHO05D007563 2.8e-46 189.5 177 59.3
vmacro10313 Vaccinium macrocarpon HOM05D006411 ORTHO05D007563 3.1e-45 186.0 172 59.3
arahy.Tifrunner.gnm1.ann1.ZM7ZD1 Arachis hypogaea HOM05D006411 ORTHO05D007563 4.1e-45 185.7 212 51.4
Nn2g15361 Nelumbo nucifera HOM05D006411 ORTHO05D007563 2.6e-44 183.0 171 55.0
ClCG06G001760 Citrullus lanatus HOM05D006411 ORTHO05D007563 4.5e-44 182.2 180 54.4
MELO3C022353.2 Cucumis melo HOM05D006411 ORTHO05D007563 9.4e-42 174.5 183 53.0
Nn3g17917 Nelumbo nucifera HOM05D006411 ORTHO05D007563 7.9e-41 171.4 166 52.4
Potri.003G163500 Populus trichocarpa HOM05D006411 ORTHO05D007563 7.9e-41 171.4 150 56.7
CBR_g41204 Chara braunii HOM05D006411 ORTHO05D007563 3.9e-40 169.1 216 43.1
Pp3c2_21820 Physcomitrium patens HOM05D006411 ORTHO05D007563 8.8e-40 167.9 208 43.3
Medtr4g078190 Medicago truncatula HOM05D006411 ORTHO05D007563 1.5e-39 167.2 140 63.6
Lj5A251G70 Lonicera japonica HOM05D006411 ORTHO05D007563 1.7e-38 163.7 204 47.5
AUR62010749 Chenopodium quinoa HOM05D006411 ORTHO05D007563 7.7e-36 154.8 152 55.9
COL.COLO4_21790 Corchorus olitorius HOM05D006411 ORTHO05D007563 1.9e-34 150.2 234 43.6
AUR62020519 Chenopodium quinoa HOM05D006411 ORTHO05D007563 5.5e-34 148.7 143 57.3
Mapoly0164s0017 Marchantia polymorpha HOM05D006411 ORTHO05D007563 5.5e-34 148.7 200 42.0
AagrBONN_evm.TU.Sc2ySwM_344.2329 Anthoceros agrestis HOM05D014047 ORTHO05D007563 7.2e-34 148.3 191 46.1
Lj5g0007299 Lotus japonicus HOM05D006411 ORTHO05D007563 4.1e-29 132.5 161 50.3
FvH4_4g07260 Fragaria vesca HOM05D006411 ORTHO05D007563 4.4e-23 112.5 96 58.3
SHI32270 Sapria himalayana HOM05D006411 ORTHO05D007563 5.5e-18 95.5 158 38.6
MCO06G175 Micromonas commoda HOM05D006411 ORTHO05D007563 1.2e-17 94.4 192 33.3
Dinv15386 Davidia involucrata HOM05D006411 ORTHO05D007563 2.0e-15 87.0 57 70.2
Nn7g35834 Nelumbo nucifera HOM05D006411 ORTHO05D007563 4.4e-15 85.9 81 56.8
SMO119G0262 Selaginella moellendorffii HOM05D006411 ORTHO05D007563 4.8e-14 82.4 132 36.4
AUR62015683 Chenopodium quinoa HOM05D006411 ORTHO05D007563 5.4e-13 79.0 71 62.0
Nn7g35833 Nelumbo nucifera HOM05D006411 ORTHO05D007563 1.0e-11 74.7 57 68.4
SGA_v2.0_scaffold360G49865 Striga asiatica HOM05D020805 ORTHO05D007563 7.2e-10 68.6 71 46.5
Glyma.12G016051 Glycine max HOM05D006411 ORTHO05D007563 3.6e-09 66.2 97 41.2
Nn2g15434 Nelumbo nucifera HOM05D006411 ORTHO05D007563 6.8e-08 62.0 177 34.5
Peaxi162Scf00217g00911 Petunia axillaris HOM05D006411 ORTHO05D007563 6.8e-08 62.0 147 29.9
MBI02_g46060_MAGBIO Magnolia biondii HOM05D006411 ORTHO05D007563 2.2e-06 57.0 38 65.8
MBI05_g34743_MAGBIO Magnolia biondii HOM05D006411 ORTHO05D007563 3.7e-06 56.2 57 50.9


User provided reference genes

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