Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G22070 Arabidopsis thaliana HOM05D007783 ORTHO05D009740 2.4e-32 142.9 179 100.0
AL3G36260 Arabidopsis lyrata HOM05D007783 ORTHO05D009740 1.1e-21 107.5 187 79.7
CARHR097930 Cardamine hirsuta HOM05D007783 ORTHO05D009740 3.4e-18 95.9 188 76.1
A01p33040 Brassica napus HOM05D007783 ORTHO05D009740 2.8e-17 92.8 183 70.5
BraA01t03426Z Brassica rapa HOM05D007783 ORTHO05D009740 2.8e-17 92.8 183 70.5
Carub.0003s2223 Capsella rubella HOM05D007783 ORTHO05D009740 4.8e-17 92.0 52 92.3
BolC1t04180H Brassica oleracea HOM05D007783 ORTHO05D009740 1.4e-16 90.5 183 78.7
C01p42180 Brassica napus HOM05D007783 ORTHO05D009740 1.8e-16 90.1 183 76.5
Sp3g19900 Schrenkiella parvula HOM05D007783 ORTHO05D009740 1.8e-16 90.1 48 91.7
C05p41370 Brassica napus HOM05D007783 ORTHO05D009740 1.2e-15 87.4 51 86.3
THA.LOC104802538 Tarenaya hassleriana HOM05D007783 ORTHO05D009740 3.4e-10 69.3 44 79.5
Manes.07G029300 Manihot esculenta HOM05D007783 ORTHO05D009740 1.7e-09 67.0 45 73.3
TWI36G1428 Tripterygium wilfordii HOM05D007783 ORTHO05D009740 4.9e-09 65.5 48 70.8
Ciclev10017097m.g Citrus clementina HOM05D007783 ORTHO05D009740 6.3e-09 65.1 51 66.7
TWI18G0657 Tripterygium wilfordii HOM05D007783 ORTHO05D009740 6.3e-09 65.1 48 70.8
FvH4_6g43650 Fragaria vesca HOM05D007783 ORTHO05D009740 1.1e-08 64.3 49 67.3
FAN05G3706 Fragaria x ananassa HOM05D007783 ORTHO05D009740 1.1e-08 64.3 49 67.3
Manes.10G111600 Manihot esculenta HOM05D007783 ORTHO05D009740 1.1e-08 64.3 45 66.7
FAN09G3630 Fragaria x ananassa HOM05D007783 ORTHO05D009740 3.1e-08 62.8 48 66.7
FAN14G2245 Fragaria x ananassa HOM05D007783 ORTHO05D009740 5.4e-08 62.0 49 65.3
Oeu041963.1 Olea europaea HOM05D007783 ORTHO05D009740 7.0e-08 61.6 53 62.3
COL.COLO4_13003 Corchorus olitorius HOM05D007783 ORTHO05D009740 9.1e-08 61.2 50 66.0
Thecc.02G163100 Theobroma cacao HOM05D007783 ORTHO05D009740 1.2e-07 60.8 50 62.0
Cpa.g.sc8.247 Carica papaya HOM05D007783 ORTHO05D009740 2.0e-07 60.1 53 56.6
Migut.H01214 Erythranthe guttata HOM05D007783 ORTHO05D009740 2.0e-07 60.1 50 62.0
Cfa014449 Carpinus fangiana HOM05D007783 ORTHO05D009740 3.5e-07 59.3 50 66.0
CiPaw.03G163700 Carya illinoinensis HOM05D007783 ORTHO05D009740 3.5e-07 59.3 47 66.0
Gohir.A12G135100 Gossypium hirsutum HOM05D007783 ORTHO05D009740 3.5e-07 59.3 48 64.6
HanXRQChr17g0563901 Helianthus annuus HOM05D007783 ORTHO05D009740 3.5e-07 59.3 49 59.2
Sed0000870 Sechium edule HOM05D007783 ORTHO05D009740 3.5e-07 59.3 47 66.0
Cfa014450 Carpinus fangiana HOM05D007783 ORTHO05D009740 4.5e-07 58.9 52 63.5
QL08p033993 Quercus lobata HOM05D007783 ORTHO05D009740 4.5e-07 58.9 53 60.4
CSS0007715 Camellia sinensis var. sinensis HOM05D007783 ORTHO05D009740 5.9e-07 58.5 51 62.7
Cfa021131 Carpinus fangiana HOM05D007783 ORTHO05D009740 5.9e-07 58.5 50 66.0
CiPaw.04G118600 Carya illinoinensis HOM05D007783 ORTHO05D009740 5.9e-07 58.5 47 59.6
Peaxi162Scf00007g01310 Petunia axillaris HOM05D007783 ORTHO05D009740 5.9e-07 58.5 53 58.5
Lsat_1_v5_gn_8_129821 Lactuca sativa HOM05D007783 ORTHO05D009740 7.7e-07 58.2 49 59.2
RcHm_v2.0_Chr2g0160271 Rosa chinensis HOM05D007783 ORTHO05D009740 7.7e-07 58.2 48 60.4
Gohir.D04G147200 Gossypium hirsutum HOM05D007783 ORTHO05D009740 1.0e-06 57.8 48 66.7
Gorai.012G133100 Gossypium raimondii HOM05D007783 ORTHO05D009740 1.0e-06 57.8 48 66.7
Potri.007G120101 Populus trichocarpa HOM05D007783 ORTHO05D009740 1.0e-06 57.8 51 56.9
Sed0005014 Sechium edule HOM05D007783 ORTHO05D009740 1.0e-06 57.8 47 66.0
Dinv10909 Davidia involucrata HOM05D007783 ORTHO05D009740 1.3e-06 57.4 45 64.4
Medtr2g089010 Medicago truncatula HOM05D007783 ORTHO05D009740 1.3e-06 57.4 50 58.0
Solyc07g052680.1 Solanum lycopersicum HOM05D007783 ORTHO05D009740 1.3e-06 57.4 49 59.2
Sopen07g026300 Solanum pennellii HOM05D007783 ORTHO05D009740 1.3e-06 57.4 49 59.2
PGSC0003DMG400026167 Solanum tuberosum HOM05D007783 ORTHO05D009740 1.3e-06 57.4 49 59.2
CSS0046432 Camellia sinensis var. sinensis HOM05D007783 ORTHO05D009740 1.7e-06 57.0 47 66.0
ClCG02G001700 Citrullus lanatus HOM05D000001 ORTHO05D000003 1.7e-06 57.0 47 63.8
MELO3C018795.2 Cucumis melo HOM05D007783 ORTHO05D009740 1.7e-06 57.0 47 63.8
Glyma.13G305400 Glycine max HOM05D007783 ORTHO05D009740 1.7e-06 57.0 46 63.0
VMungo1080G1091 Vigna mungo HOM05D007783 ORTHO05D009740 1.7e-06 57.0 48 60.4
MSTRG.12290 Avicennia marina HOM05D007783 ORTHO05D009740 2.3e-06 56.6 47 61.7
ECA246G5319 Erigeron canadensis HOM05D007783 ORTHO05D009740 2.3e-06 56.6 54 53.7
Gohir.A04G107200 Gossypium hirsutum HOM05D007783 ORTHO05D009740 2.3e-06 56.6 46 67.4
Lj3g0010205 Lotus japonicus HOM05D007783 ORTHO05D009740 2.9e-06 56.2 51 58.8
Rhsim06G0156700 Rhododendron simsii HOM05D000213 ORTHO05D009740 2.9e-06 56.2 52 55.8
Actinidia30505 Actinidia chinensis HOM05D007783 ORTHO05D009740 3.8e-06 55.8 45 62.2
Cfa021551 Carpinus fangiana HOM05D007783 ORTHO05D009740 3.8e-06 55.8 50 62.0
Cc00_g19250 Coffea canephora HOM05D007783 ORTHO05D009740 5.0e-06 55.5 61 52.5
Prupe.3G221700 Prunus persica HOM05D007783 ORTHO05D009740 5.0e-06 55.5 53 58.5
Sc21g0001790 Simmondsia chinensis HOM05D007783 ORTHO05D009740 5.0e-06 55.5 53 58.5
CANSAT64G1524 Cannabis sativa HOM05D007783 ORTHO05D009740 6.6e-06 55.1 48 62.5
Gohir.D12G138800 Gossypium hirsutum HOM05D007783 ORTHO05D009740 8.6e-06 54.7 46 65.2
Gorai.008G150200 Gossypium raimondii HOM05D007783 ORTHO05D009740 8.6e-06 54.7 46 65.2
Nitab4.5_0002949g0070 Nicotiana tabacum HOM05D007783 ORTHO05D009740 8.6e-06 54.7 48 56.2
Oeu011075.1 Olea europaea HOM05D007783 ORTHO05D009740 8.6e-06 54.7 52 53.8


User provided reference genes

Program Settings