Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G21730 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 2.4e-37 158.3 77 100.0
AL3G35860 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 1.0e-27 126.3 65 93.8
Thhalv10021697m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 2.3e-16 88.6 65 61.5
Carub.0003s1109 Capsella rubella HOM05D003887 ORTHO05D004523 8.7e-16 86.7 65 58.5
BcaB04g21119 Brassica carinata HOM05D003887 ORTHO05D004523 1.9e-15 85.5 65 56.9
Sp3g09980 Schrenkiella parvula HOM05D003887 ORTHO05D004523 1.9e-15 85.5 65 60.0
AL3G23320 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 2.5e-15 85.1 63 60.3
AT3G11750 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 4.3e-15 84.3 63 60.3
BcaC09g48199 Brassica carinata HOM05D003887 ORTHO05D004523 4.3e-15 84.3 65 56.9
BolC1t05293H Brassica oleracea HOM05D003887 ORTHO05D004523 4.3e-15 84.3 65 56.9
BraA01t04162Z Brassica rapa HOM05D003887 ORTHO05D004523 4.3e-15 84.3 65 56.9
BcaB06g25586 Brassica carinata HOM05D003887 ORTHO05D004523 1.1e-13 79.7 64 51.6
BcaC05g29334 Brassica carinata HOM05D003887 ORTHO05D004523 1.1e-13 79.7 64 51.6
C05p56150 Brassica napus HOM05D003887 ORTHO05D004523 1.1e-13 79.7 64 51.6
A05p37590 Brassica napus HOM05D003887 ORTHO05D004523 1.4e-13 79.3 65 52.3
BraA05t22557Z Brassica rapa HOM05D003887 ORTHO05D004523 1.4e-13 79.3 65 52.3
A05p37580 Brassica napus HOM05D003887 ORTHO05D004523 4.1e-13 77.8 64 50.0
BraA05t22556Z Brassica rapa HOM05D003887 ORTHO05D004523 4.1e-13 77.8 64 50.0
Aa31LG3G5210 Aethionema arabicum HOM05D003887 ORTHO05D004523 2.0e-12 75.5 63 50.8
CARHR276790 Cardamine hirsuta HOM05D003887 ORTHO05D004523 5.9e-12 73.9 63 52.4
Thhalv10005125m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 5.9e-12 73.9 62 53.2
Aa31LG3G5240 Aethionema arabicum HOM05D003887 ORTHO05D004523 7.7e-12 73.6 70 50.0
AL8G40010 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 1.0e-11 73.2 62 54.8
BcaB02g09713 Brassica carinata HOM05D003887 ORTHO05D004523 1.0e-11 73.2 62 54.8
AT5G62980 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 2.2e-11 72.0 62 53.2
Carub.0008s2369 Capsella rubella HOM05D003887 ORTHO05D004523 2.2e-11 72.0 63 50.8
MD14G1042300 Malus domestica HOM05D003887 ORTHO05D004523 2.2e-11 72.0 64 50.0
Nn5g28552 Nelumbo nucifera HOM05D003887 ORTHO05D004523 2.2e-11 72.0 64 56.2
Potri.016G067200 Populus trichocarpa HOM05D003887 ORTHO05D004523 6.5e-11 70.5 64 51.6
RcHm_v2.0_Chr3g0476591 Rosa chinensis HOM05D003887 ORTHO05D004523 6.5e-11 70.5 64 50.0
Aa31LG3G5230 Aethionema arabicum HOM05D003887 ORTHO05D004523 8.5e-11 70.1 63 47.6
Prupe.7G091600 Prunus persica HOM05D003887 ORTHO05D004523 1.1e-10 69.7 64 50.0
THA.LOC104826798 Tarenaya hassleriana HOM05D003887 ORTHO05D004523 1.1e-10 69.7 62 50.0
Eucgr.G00614 Eucalyptus grandis HOM05D003887 ORTHO05D004523 1.4e-10 69.3 64 51.6
Ciclev10013089m.g Citrus clementina HOM05D003887 ORTHO05D004523 1.9e-10 68.9 64 50.0
MD12G1043200 Malus domestica HOM05D003887 ORTHO05D004523 1.9e-10 68.9 64 48.4
CAN.G1237.27 Capsicum annuum HOM05D003887 ORTHO05D004523 2.5e-10 68.6 64 50.0
ATR0730G208 Amborella trichopoda HOM05D003887 ORTHO05D004523 3.2e-10 68.2 63 50.8
Nn1g06263 Nelumbo nucifera HOM05D003887 ORTHO05D004523 4.2e-10 67.8 63 52.4
Nitab4.5_0008674g0010 Nicotiana tabacum HOM05D003887 ORTHO05D004523 4.2e-10 67.8 63 49.2
Solyc10g079830.3 Solanum lycopersicum HOM05D003887 ORTHO05D004523 4.2e-10 67.8 64 48.4
Sopen10g030440 Solanum pennellii HOM05D003887 ORTHO05D004523 4.2e-10 67.8 64 48.4
HPP92_016697 Vanilla planifolia HOM05D003887 ORTHO05D004523 4.2e-10 67.8 65 50.8
Cc06_g06820 Coffea canephora HOM05D003887 ORTHO05D004523 5.5e-10 67.4 63 49.2
Lalb_Chr20g0111271 Lupinus albus HOM05D003887 ORTHO05D004523 5.5e-10 67.4 65 47.7
PSO339G1162 Papaver somniferum HOM05D003887 ORTHO05D004523 5.5e-10 67.4 63 52.4
SHI28303 Sapria himalayana HOM05D003887 ORTHO05D004523 5.5e-10 67.4 63 50.8
Sc06g0008630 Simmondsia chinensis HOM05D003887 ORTHO05D004523 5.5e-10 67.4 63 47.6
AagrBONN_evm.TU.Sc2ySwM_117.2540 Anthoceros agrestis HOM05D003887 ORTHO05D004523 7.2e-10 67.0 63 52.4
CSS0042801 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 7.2e-10 67.0 61 47.5
TAR265G0002 Trochodendron aralioides HOM05D003887 ORTHO05D004523 7.2e-10 67.0 63 50.8
EL10Ac7g16270 Beta vulgaris HOM05D003887 ORTHO05D004523 9.4e-10 66.6 63 49.2
CAN.G1656.10 Capsicum annuum HOM05D003887 ORTHO05D004523 9.4e-10 66.6 64 46.9
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 9.4e-10 66.6 64 48.4
Hund18807 Selenicereus undatus HOM05D003887 ORTHO05D004523 9.4e-10 66.6 63 49.2
Atru.chr8.1305 Acer truncatum HOM05D003887 ORTHO05D004523 1.2e-09 66.2 64 48.4
Haze_20135 Corylus avellana HOM05D003887 ORTHO05D004523 1.2e-09 66.2 64 51.6
Duzib106G1345 Durio zibethinus HOM05D003887 ORTHO05D004523 1.2e-09 66.2 64 50.0
FvH4_6g20690 Fragaria vesca HOM05D003887 ORTHO05D004523 1.2e-09 66.2 64 46.9
FAN05G1871 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.2e-09 66.2 63 47.6
FAN05G1982 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.2e-09 66.2 64 46.9
FAN14G0913 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.2e-09 66.2 64 46.9
Os09g0560500 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 1.2e-09 66.2 63 52.4
GSVIVG01028462001 Vitis vinifera HOM05D003887 ORTHO05D004523 1.2e-09 66.2 64 53.1
ATR0730G166 Amborella trichopoda HOM05D003887 ORTHO05D004523 1.6e-09 65.9 63 49.2
Manes.08G035800 Manihot esculenta HOM05D003887 ORTHO05D004523 1.6e-09 65.9 63 47.6
PGR142G0321 Punica granatum HOM05D003887 ORTHO05D004523 1.6e-09 65.9 63 49.2
Peaxi162Scf00130g01133 Petunia axillaris HOM05D003887 ORTHO05D004523 2.1e-09 65.5 63 47.6
Rhsim03G0059700 Rhododendron simsii HOM05D003887 ORTHO05D004523 2.1e-09 65.5 60 51.7
CSS0033244 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 2.7e-09 65.1 60 46.7
Os06g0154600 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 2.7e-09 65.1 62 53.2
Os08g0556200 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 2.7e-09 65.1 63 47.6
Rhsim03G0060000 Rhododendron simsii HOM05D003887 ORTHO05D004523 2.7e-09 65.1 60 51.7
Rhsim03G0060200 Rhododendron simsii HOM05D003887 ORTHO05D004523 2.7e-09 65.1 60 51.7
Sabra16G0068500 Salix brachista HOM05D003887 ORTHO05D004523 2.7e-09 65.1 61 49.2
SEGI_09372 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 2.7e-09 65.1 60 51.7
Ah.08g222240 Amaranthus hybridus HOM05D003887 ORTHO05D004523 3.6e-09 64.7 63 46.0
Cc06_g20890 Coffea canephora HOM05D003887 ORTHO05D004523 3.6e-09 64.7 63 47.6
Hma1.2p1_0969F.1_g242620 Hydrangea macrophylla HOM05D003887 ORTHO05D004523 3.6e-09 64.7 61 47.5
PSO513G0196 Papaver somniferum HOM05D003887 ORTHO05D004523 3.6e-09 64.7 60 53.3
SMO351G0485 Selaginella moellendorffii HOM05D003887 ORTHO05D004523 3.6e-09 64.7 62 50.0
vmacro07505 Vaccinium macrocarpon HOM05D003887 ORTHO05D004523 3.6e-09 64.7 61 50.8
CDE02G3355 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 6.1e-09 63.9 61 49.2
FAN09G3131 Fragaria x ananassa HOM05D003887 ORTHO05D004523 6.1e-09 63.9 64 46.9
PGSC0003DMG400029847 Solanum tuberosum HOM05D003887 ORTHO05D004523 6.1e-09 63.9 64 45.3
QL07p027116 Quercus lobata HOM05D003887 ORTHO05D004523 7.9e-09 63.5 64 50.0
Sc06g0010620 Simmondsia chinensis HOM05D003887 ORTHO05D004523 7.9e-09 63.5 61 44.3
FAN02G3629 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.0e-08 63.2 64 45.3
TAR633G0863 Trochodendron aralioides HOM05D003887 ORTHO05D004523 1.0e-08 63.2 64 48.4
MSTRG.10420 Avicennia marina HOM05D003887 ORTHO05D004523 1.4e-08 62.8 62 45.2
MSTRG.26582 Avicennia marina HOM05D003887 ORTHO05D004523 1.4e-08 62.8 62 46.8
CANSAT64G2672 Cannabis sativa HOM05D003887 ORTHO05D004523 1.4e-08 62.8 64 46.9
DCAR_020685 Daucus carota HOM05D003887 ORTHO05D004523 1.4e-08 62.8 64 48.4
unitig_899.g14853 Utricularia gibba HOM05D003887 ORTHO05D004523 1.4e-08 62.8 63 46.0
Zm00001eb039720 Zea mays HOM05D003887 ORTHO05D004523 1.4e-08 62.8 62 46.8
CiPaw.09G022700 Carya illinoinensis HOM05D003887 ORTHO05D004523 1.8e-08 62.4 64 48.4
MBI07_g23221_MAGBIO Magnolia biondii HOM05D003887 ORTHO05D004523 1.8e-08 62.4 63 46.0
Zm00001eb039830 Zea mays HOM05D003887 ORTHO05D004523 1.8e-08 62.4 62 48.4
Lj3C240T1 Lonicera japonica HOM05D003887 ORTHO05D004523 2.3e-08 62.0 64 46.9
Medtr2g088720 Medicago truncatula HOM05D003887 ORTHO05D004523 3.0e-08 61.6 63 44.4
TWI18G1123 Tripterygium wilfordii HOM05D003887 ORTHO05D004523 3.0e-08 61.6 64 46.9
PSO210G2693 Papaver somniferum HOM05D003887 ORTHO05D004523 3.9e-08 61.2 62 50.0
Aqoxy1G00605 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 5.1e-08 60.8 63 46.0
PSO782G0206 Papaver somniferum HOM05D003887 ORTHO05D004523 5.1e-08 60.8 63 46.0
Migut.L01853 Erythranthe guttata HOM05D003887 ORTHO05D004523 6.7e-08 60.5 63 42.9
Lj1g0007196 Lotus japonicus HOM05D003887 ORTHO05D004523 6.7e-08 60.5 63 44.4
QL02p078458 Quercus lobata HOM05D003887 ORTHO05D004523 6.7e-08 60.5 64 46.9
QL10p000363 Quercus lobata HOM05D003887 ORTHO05D004523 6.7e-08 60.5 64 46.9
Psat5g004600 Pisum sativum HOM05D003887 ORTHO05D004523 8.8e-08 60.1 64 42.2
Aqoxy2G02430 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 1.1e-07 59.7 63 44.4
arahy.Tifrunner.gnm1.ann1.3PGZ0K Arachis hypogaea HOM05D003887 ORTHO05D004523 1.1e-07 59.7 63 47.6
arahy.Tifrunner.gnm1.ann1.T8NVRB Arachis hypogaea HOM05D003887 ORTHO05D004523 1.1e-07 59.7 71 39.4
COL.COLO4_29521 Corchorus olitorius HOM05D003887 ORTHO05D004523 1.5e-07 59.3 64 45.3
DCAR_009071 Daucus carota HOM05D003887 ORTHO05D004523 1.5e-07 59.3 69 46.4
Duzib128G1521 Durio zibethinus HOM05D003887 ORTHO05D004523 1.5e-07 59.3 63 46.0
PSO513G0097 Papaver somniferum HOM05D003887 ORTHO05D004523 1.5e-07 59.3 63 42.9
Thecc.05G108100 Theobroma cacao HOM05D003887 ORTHO05D004523 1.5e-07 59.3 64 45.3
arahy.Tifrunner.gnm1.ann1.97GEQU Arachis hypogaea HOM05D003887 ORTHO05D004523 2.0e-07 58.9 63 46.0
Gohir.A01G135300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.0e-07 58.9 63 44.4
Gohir.D01G122500 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.0e-07 58.9 63 44.4
Gohir.D04G154300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.0e-07 58.9 64 42.2
Gorai.002G153400 Gossypium raimondii HOM05D003887 ORTHO05D004523 2.0e-07 58.9 63 44.4
Gorai.012G141600 Gossypium raimondii HOM05D003887 ORTHO05D004523 2.0e-07 58.9 64 42.2
Medtr7g106580 Medicago truncatula HOM05D003887 ORTHO05D004523 2.0e-07 58.9 64 42.2
SGA_v2.0_scaffold392G50674 Striga asiatica HOM05D003887 ORTHO05D004523 2.0e-07 58.9 61 42.6
Cpa.g.sc104.4 Carica papaya HOM05D003887 ORTHO05D004523 2.6e-07 58.5 64 43.8
ClCG04G001280 Citrullus lanatus HOM05D003887 ORTHO05D004523 2.6e-07 58.5 64 37.5
Psat3g027720 Pisum sativum HOM05D001091 ORTHO05D004523 2.6e-07 58.5 64 40.6
Sed0005545 Sechium edule HOM05D003887 ORTHO05D004523 2.6e-07 58.5 64 35.9
TPR.G25788 Trifolium pratense HOM05D003887 ORTHO05D004523 2.6e-07 58.5 64 40.6
SEGI_12007 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 3.3e-07 58.2 60 46.7
Medtr7g106600 Medicago truncatula HOM05D003887 ORTHO05D004523 4.4e-07 57.8 63 41.3
PSO339G2059 Papaver somniferum HOM05D003887 ORTHO05D004523 4.4e-07 57.8 62 41.9
VMungo1215G2564 Vigna mungo HOM05D003887 ORTHO05D004523 5.7e-07 57.4 63 44.4
Glyma.03G203800 Glycine max HOM05D003887 ORTHO05D004523 7.4e-07 57.0 63 42.9
Gohir.A04G113000 Gossypium hirsutum HOM05D003887 ORTHO05D004523 7.4e-07 57.0 64 43.8
arahy.Tifrunner.gnm1.ann1.Z0QHZD Arachis hypogaea HOM05D003887 ORTHO05D004523 9.7e-07 56.6 63 44.4
CDE09G0948 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 9.7e-07 56.6 47 55.3
AUR62020206 Chenopodium quinoa HOM05D003887 ORTHO05D004523 9.7e-07 56.6 63 42.9
MELO3C019050.2 Cucumis melo HOM05D003887 ORTHO05D004523 1.3e-06 56.2 64 34.4
Phvul.001G197300 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 1.3e-06 56.2 63 42.9
Phvul.001G204200 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 1.3e-06 56.2 63 42.9
VMungo1383G2471 Vigna mungo HOM05D003887 ORTHO05D004523 1.3e-06 56.2 63 42.9
SalBow7G3037 Salvia bowleyana HOM05D003887 ORTHO05D004523 1.7e-06 55.8 55 45.5
CsaV3_4G004540 Cucumis sativus L. HOM05D003887 ORTHO05D004523 2.2e-06 55.5 64 32.8
ECA233G2913 Erigeron canadensis HOM05D003887 ORTHO05D004523 2.2e-06 55.5 64 43.8
HanXRQChr13g0398651 Helianthus annuus HOM05D003887 ORTHO05D004523 2.2e-06 55.5 64 43.8
Lj6g0023596 Lotus japonicus HOM05D003887 ORTHO05D004523 2.8e-06 55.1 63 38.1
Pp3c1_42850 Physcomitrium patens HOM05D003887 ORTHO05D004523 3.7e-06 54.7 59 49.2
Glyma.07G068300 Glycine max HOM05D003887 ORTHO05D004523 4.8e-06 54.3 63 41.3
arahy.Tifrunner.gnm1.ann1.K0K91E Arachis hypogaea HOM05D003887 ORTHO05D004523 6.3e-06 53.9 63 42.9
Ca_09068_v3 Cicer arietinum L. HOM05D003887 ORTHO05D004523 6.3e-06 53.9 63 39.7
HanXRQChr01g0028311 Helianthus annuus HOM05D003887 ORTHO05D004523 6.3e-06 53.9 64 43.8
Glyma.16G034300 Glycine max HOM05D003887 ORTHO05D004523 8.2e-06 53.5 63 42.9


User provided reference genes

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