Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G21465 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 1.5e-225 785.8 389 100.0
AL3G35540 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 6.0e-206 720.7 391 92.3
Sp3g19500 Schrenkiella parvula HOM05D005247 ORTHO05D006571 1.6e-195 686.0 396 87.6
Carub.0003s2149 Capsella rubella HOM05D005247 ORTHO05D006571 2.2e-192 675.6 400 86.0
BcaC05g28162 Brassica carinata HOM05D005247 ORTHO05D006571 7.4e-188 660.6 396 85.6
C05p41980 Brassica napus HOM05D005247 ORTHO05D006571 7.4e-188 660.6 396 85.6
A05p27200 Brassica napus HOM05D005247 ORTHO05D006571 2.8e-187 658.7 397 85.1
BolC5t32932H Brassica oleracea HOM05D005247 ORTHO05D006571 3.1e-186 655.2 405 83.7
BraA05t21609Z Brassica rapa HOM05D005247 ORTHO05D006571 2.0e-185 652.5 402 84.1
BcaB06g26247 Brassica carinata HOM05D005247 ORTHO05D006571 4.7e-182 641.3 389 84.1
THA.LOC104802559 Tarenaya hassleriana HOM05D005247 ORTHO05D006571 1.6e-166 589.7 396 75.0
Carub.0007s2616 Capsella rubella HOM05D005247 ORTHO05D006571 6.3e-163 577.8 396 74.5
AT4G15640 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 2.7e-161 572.4 398 73.6
CARHR290040 Cardamine hirsuta HOM05D005247 ORTHO05D006571 4.5e-161 571.6 396 74.2
Thhalv10025397m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 1.1e-159 567.0 397 72.8
Sp7g13890 Schrenkiella parvula HOM05D005247 ORTHO05D006571 7.2e-159 564.3 396 73.0
Aa31LG9G1800 Aethionema arabicum HOM05D005247 ORTHO05D006571 1.6e-158 563.1 393 72.5
AL7G39790 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 8.3e-155 550.8 328 82.6
Thhalv10021000m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 1.8e-146 523.1 393 69.7
QL06p007567 Quercus lobata HOM05D005247 ORTHO05D006571 5.0e-136 488.4 400 61.0
Prupe.1G141100 Prunus persica HOM05D005247 ORTHO05D006571 1.3e-128 463.8 399 58.1
CiPaw.02G086000 Carya illinoinensis HOM05D005247 ORTHO05D006571 9.5e-127 457.6 397 56.9
Duzib151G0039 Durio zibethinus HOM05D005247 ORTHO05D006571 1.4e-125 453.8 394 59.6
Cfa015350 Carpinus fangiana HOM05D005247 ORTHO05D006571 1.8e-125 453.4 415 57.1
Gohir.A09G233900 Gossypium hirsutum HOM05D005247 ORTHO05D006571 4.0e-125 452.2 393 59.8
Ciclev10005079m.g Citrus clementina HOM05D005247 ORTHO05D006571 3.4e-124 449.1 369 60.7
MD13G1173000 Malus domestica HOM05D005247 ORTHO05D006571 7.6e-124 448.0 400 56.2
Atru.chr4.2766 Acer truncatum HOM05D005247 ORTHO05D006571 9.9e-124 447.6 404 56.9
Gorai.006G257600 Gossypium raimondii HOM05D005247 ORTHO05D006571 1.7e-123 446.8 393 58.8
MD16G1174400 Malus domestica HOM05D005247 ORTHO05D006571 1.7e-123 446.8 399 56.6
RcHm_v2.0_Chr4g0421281 Rosa chinensis HOM05D005247 ORTHO05D006571 8.3e-123 444.5 399 59.1
Thecc.04G278500 Theobroma cacao HOM05D005247 ORTHO05D006571 1.4e-122 443.7 391 58.6
Actinidia23422 Actinidia chinensis HOM05D005247 ORTHO05D006571 2.4e-122 443.0 405 56.3
Hma1.2p1_0078F.1_g040780 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 4.6e-121 438.7 400 56.0
Gohir.D09G234700 Gossypium hirsutum HOM05D005247 ORTHO05D006571 2.3e-120 436.4 393 58.0
CSS0036429 Camellia sinensis var. sinensis HOM05D005247 ORTHO05D006571 3.9e-120 435.6 404 56.4
Lalb_Chr12g0196461 Lupinus albus HOM05D005247 ORTHO05D006571 1.5e-119 433.7 327 62.1
Psat5g125320 Pisum sativum HOM05D005247 ORTHO05D006571 1.5e-119 433.7 388 55.9
Lj4g0024405 Lotus japonicus HOM05D005247 ORTHO05D006571 7.3e-119 431.4 387 55.0
Cpa.g.sc16.124 Carica papaya HOM05D005247 ORTHO05D006571 9.6e-119 431.0 380 57.4
TPR.G28788 Trifolium pratense HOM05D005247 ORTHO05D006571 4.7e-118 428.7 329 61.4
Potri.008G205300 Populus trichocarpa HOM05D005247 ORTHO05D006571 1.4e-117 427.2 394 54.6
FAN07G0437 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.8e-117 426.8 385 57.1
Eucgr.H03774 Eucalyptus grandis HOM05D005247 ORTHO05D006571 3.1e-117 426.0 318 63.2
Phvul.003G101400 Phaseolus vulgaris HOM05D005247 ORTHO05D006571 8.9e-117 424.5 387 55.3
Glyma.17G023300 Glycine max HOM05D005247 ORTHO05D006571 1.2e-116 424.1 321 62.3
PGR142G1936 Punica granatum HOM05D005247 ORTHO05D006571 1.2e-116 424.1 326 60.7
FvH4_4g17340 Fragaria vesca HOM05D005247 ORTHO05D006571 3.4e-116 422.5 332 62.7
Sc13g0003580 Simmondsia chinensis HOM05D005247 ORTHO05D006571 4.4e-116 422.2 327 60.9
FAN17G1560 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.7e-115 420.2 394 56.1
CANSAT78G0941 Cannabis sativa HOM05D005247 ORTHO05D006571 2.2e-115 419.9 391 56.3
Medtr3g069790 Medicago truncatula HOM05D005247 ORTHO05D006571 2.9e-115 419.5 384 54.9
Glyma.07G251000 Glycine max HOM05D005247 ORTHO05D006571 6.4e-115 418.3 385 55.3
Ca_21545_v3 Cicer arietinum L. HOM05D005247 ORTHO05D006571 8.4e-115 417.9 390 53.1
TAR362G0112 Trochodendron aralioides HOM05D005247 ORTHO05D006571 8.4e-115 417.9 323 63.5
Rhsim04G0216900 Rhododendron simsii HOM05D005247 ORTHO05D006571 1.1e-114 417.5 324 61.7
Aqoxy5G00647 Aquilegia oxysepala HOM05D005247 ORTHO05D006571 1.4e-114 417.2 324 60.2
Nn7g38324 Nelumbo nucifera HOM05D005247 ORTHO05D006571 1.9e-114 416.8 405 52.1
TPR.G29803 Trifolium pratense HOM05D005247 ORTHO05D006571 1.9e-114 416.8 378 54.8
TWI09G0062 Tripterygium wilfordii HOM05D005247 ORTHO05D006571 3.2e-114 416.0 395 53.7
VMungo1215G2055 Vigna mungo HOM05D005247 ORTHO05D006571 4.6e-113 412.1 318 61.3
GSVIVG01017794001 Vitis vinifera HOM05D005247 ORTHO05D006571 1.7e-112 410.2 325 62.2
BcaB04g18303 Brassica carinata HOM05D005247 ORTHO05D006571 3.0e-112 409.5 298 70.1
Solyc07g041930.3 Solanum lycopersicum HOM05D005247 ORTHO05D006571 3.0e-112 409.5 327 58.4
Manes.15G016200 Manihot esculenta HOM05D005247 ORTHO05D006571 6.6e-112 408.3 324 60.5
FAN12G4219 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.5e-111 407.1 358 58.4
Cc03_g02260 Coffea canephora HOM05D005247 ORTHO05D006571 2.5e-111 406.4 404 53.0
Sopen07g021430 Solanum pennellii HOM05D005247 ORTHO05D006571 2.5e-111 406.4 327 58.7
BolC8t48291H Brassica oleracea HOM05D005247 ORTHO05D006571 2.1e-110 403.3 452 53.1
Haze_01257 Corylus avellana HOM05D005247 ORTHO05D006571 4.8e-110 402.1 464 49.1
vmacro08197 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 6.2e-110 401.7 343 55.4
Ah.13g074520 Amaranthus hybridus HOM05D005247 ORTHO05D006571 3.1e-109 399.4 343 55.4
Nitab4.5_0006478g0050 Nicotiana tabacum HOM05D005247 ORTHO05D006571 3.1e-109 399.4 328 56.7
AUR62040732 Chenopodium quinoa HOM05D005247 ORTHO05D006571 4.0e-109 399.1 387 52.7
AUR62043783 Chenopodium quinoa HOM05D005247 ORTHO05D006571 5.3e-109 398.7 387 52.5
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 1.5e-108 397.1 320 57.2
EL10Ac3g06569 Beta vulgaris HOM05D005247 ORTHO05D006571 4.4e-108 395.6 306 58.8
Nitab4.5_0009436g0020 Nicotiana tabacum HOM05D005247 ORTHO05D006571 7.6e-108 394.8 322 56.5
Nitab4.5_0001357g0080 Nicotiana tabacum HOM05D005247 ORTHO05D006571 1.3e-107 394.0 327 56.3
DCAR_024549 Daucus carota HOM05D005247 ORTHO05D006571 3.8e-107 392.5 303 62.4
ECA234G2791 Erigeron canadensis HOM05D005247 ORTHO05D006571 6.4e-107 391.7 380 53.9
Peaxi162Scf00127g00146 Petunia axillaris HOM05D005247 ORTHO05D006571 3.5e-105 386.0 308 57.1
Lsat_1_v5_gn_4_34220 Lactuca sativa HOM05D005247 ORTHO05D006571 6.0e-105 385.2 321 55.8
Nitab4.5_0000343g0170 Nicotiana tabacum HOM05D005247 ORTHO05D006571 1.3e-104 384.0 324 55.6
Dinv38319 Davidia involucrata HOM05D005247 ORTHO05D006571 3.0e-104 382.9 329 60.2
arahy.Tifrunner.gnm1.ann1.8Y06GW Arachis hypogaea HOM05D005247 ORTHO05D006571 3.3e-103 379.4 383 50.9
MSTRG.21809 Avicennia marina HOM05D005247 ORTHO05D006571 3.3e-103 379.4 321 56.1
HanXRQChr17g0562111 Helianthus annuus HOM05D005247 ORTHO05D006571 4.3e-103 379.0 383 51.2
arahy.Tifrunner.gnm1.ann1.A4UT9N Arachis hypogaea HOM05D005247 ORTHO05D006571 1.6e-102 377.1 383 50.9
PSO541G1846 Papaver somniferum HOM05D005247 ORTHO05D006571 2.1e-102 376.7 401 48.6
TAR633G1275 Trochodendron aralioides HOM05D005247 ORTHO05D006571 1.4e-101 374.0 323 58.2
PSO675G0879 Papaver somniferum HOM05D005247 ORTHO05D006571 2.0e-100 370.2 400 47.5
ClCG05G005860 Citrullus lanatus HOM05D005247 ORTHO05D006571 6.4e-99 365.2 384 51.8
SGA_v2.0_scaffold89G27537 Striga asiatica HOM05D005247 ORTHO05D006571 8.4e-99 364.8 366 50.0
CsaV3_3G014210 Cucumis sativus L. HOM05D005247 ORTHO05D006571 1.4e-98 364.0 382 51.6
Sed0017520 Sechium edule HOM05D005247 ORTHO05D006571 9.3e-98 361.3 386 51.6
FAN12G3211 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.3e-96 357.5 337 53.1
Migut.N00115 Erythranthe guttata HOM05D005247 ORTHO05D006571 9.6e-95 351.3 339 51.0
Zm00001eb330100 Zea mays HOM05D005247 ORTHO05D006571 1.3e-94 350.9 316 50.6
SGA_v2.0_scaffold175G39318 Striga asiatica HOM05D005247 ORTHO05D006571 4.0e-93 345.9 400 45.5
Os07g0668200 Oryza sativa ssp. japonica HOM05D005247 ORTHO05D006571 1.5e-92 344.0 316 49.7
ATR0706G238 Amborella trichopoda HOM05D005247 ORTHO05D006571 2.6e-92 343.2 350 49.1
Dinv44420 Davidia involucrata HOM05D005247 ORTHO05D006571 2.9e-91 339.7 240 65.0
unitig_748.g7195 Utricularia gibba HOM05D005247 ORTHO05D006571 1.2e-84 317.8 323 47.1
Hma1.2p1_3003F.1_g331535 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 4.5e-84 315.8 345 48.1
MELO3C006614.2 Cucumis melo HOM05D005247 ORTHO05D006571 1.1e-82 311.2 306 54.2
Atru.chr4.2761 Acer truncatum HOM05D005247 ORTHO05D006571 2.7e-81 306.6 280 56.8
Sabra08G0156600 Salix brachista HOM05D005247 ORTHO05D006571 1.1e-79 301.2 273 54.9
Eucgr.H03753 Eucalyptus grandis HOM05D005247 ORTHO05D006571 2.4e-77 293.5 229 61.1
vmacro08194 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 1.5e-76 290.8 272 55.1
COL.COLO4_13921 Corchorus olitorius HOM05D005247 ORTHO05D006571 5.0e-75 285.8 360 45.6
Hund20585 Selenicereus undatus HOM05D005247 ORTHO05D006571 6.1e-73 278.9 203 64.0
Psat4g226360 Pisum sativum HOM05D005247 ORTHO05D006571 5.3e-69 265.8 326 44.5
Lj6A670T87 Lonicera japonica HOM05D005247 ORTHO05D006571 8.5e-59 231.9 352 42.3
BraA08t33173Z Brassica rapa HOM05D005247 ORTHO05D006571 2.4e-53 213.8 123 82.9
RcHm_v2.0_Chr4g0421901 Rosa chinensis HOM05D005247 ORTHO05D006571 4.1e-53 213.0 189 55.0
SHI00299 Sapria himalayana HOM05D005247 ORTHO05D000987 1.7e-51 207.6 248 44.8
Eucgr.C02045 Eucalyptus grandis HOM05D005247 ORTHO05D006571 3.2e-42 176.8 132 63.6
Psat5g177080 Pisum sativum HOM05D005247 ORTHO05D006571 1.4e-37 161.4 190 45.8
Pp3c14_15200 Physcomitrium patens HOM05D005247 ORTHO05D006571 3.1e-37 160.2 313 32.3
Mapoly0002s0143 Marchantia polymorpha HOM05D005247 ORTHO05D006571 5.0e-35 152.9 304 28.6
HPP92_013697 Vanilla planifolia HOM05D005247 ORTHO05D006571 9.5e-34 148.7 181 40.3
Sabra08G0156700 Salix brachista HOM05D005247 ORTHO05D006571 1.2e-31 141.7 123 56.9
BcaC07g37894 Brassica carinata HOM05D005247 ORTHO05D006571 3.2e-29 133.7 213 43.2
AagrBONN_evm.TU.Sc2ySwM_228.2885 Anthoceros agrestis HOM05D005247 ORTHO05D006571 1.6e-25 121.3 221 34.8
SEGI_33954 Sequoiadendron giganteum HOM05D005247 ORTHO05D000001 6.2e-25 119.4 150 39.3
Psat6g103040 Pisum sativum HOM05D005247 ORTHO05D006571 3.1e-24 117.1 77 67.5
Eucgr.F02603 Eucalyptus grandis HOM05D005247 ORTHO05D006571 3.4e-23 113.6 77 66.2
RcHm_v2.0_Chr4g0421891 Rosa chinensis HOM05D005247 ORTHO05D006571 2.0e-20 104.4 102 52.9
SMO202G0041 Selaginella moellendorffii HOM05D005247 ORTHO05D006571 2.0e-20 104.4 254 27.2
CBR_g30222 Chara braunii HOM05D005247 ORTHO05D006571 1.3e-19 101.7 304 24.3
Eucgr.H03759 Eucalyptus grandis HOM05D005247 ORTHO05D006571 2.1e-17 94.4 87 50.6
Actinidia40231 Actinidia chinensis HOM05D005247 ORTHO05D006571 2.2e-14 84.3 91 44.0
CAN.G640.20 Capsicum annuum HOM05D005247 ORTHO05D006571 1.4e-13 81.6 111 35.1
CAN.G640.21 Capsicum annuum HOM05D005247 ORTHO05D006571 7.1e-13 79.3 71 56.3
Pp3c14_7470 Physcomitrium patens HOM05D005247 ORTHO05D006571 7.8e-12 75.9 311 21.9
Eucgr.H03758 Eucalyptus grandis HOM05D005247 ORTHO05D006571 8.9e-08 62.4 39 61.5
FAN22G1325 Fragaria x ananassa HOM05D005247 ORTHO05D006571 2.9e-06 57.4 70 41.4
Hund28065 Selenicereus undatus HOM05D000003 ORTHO05D000006 8.4e-06 55.8 169 27.2
Hund28074 Selenicereus undatus HOM05D000003 ORTHO05D000006 8.4e-06 55.8 169 27.2


User provided reference genes

Program Settings