Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G21290 Arabidopsis thaliana HOM05D004845 ORTHO05D005957 0.0e+00 2026.9 1193 100.0
AL3G35330 Arabidopsis lyrata HOM05D004845 ORTHO05D005957 0.0e+00 1840.1 1205 90.6
Carub.0003s2130 Capsella rubella HOM05D004845 ORTHO05D005957 0.0e+00 1642.9 1210 82.1
Thhalv10019924m.g Eutrema salsugineum HOM05D004845 ORTHO05D005957 0.0e+00 1558.1 1180 80.8
Sp3g19330 Schrenkiella parvula HOM05D004845 ORTHO05D005957 0.0e+00 1479.5 1212 75.0
BcaB06g26218 Brassica carinata HOM05D004845 ORTHO05D005957 0.0e+00 1350.5 1212 71.9
BraA05t21625Z Brassica rapa HOM05D004845 ORTHO05D005957 0.0e+00 1302.7 1183 70.5
A05p27330 Brassica napus HOM05D004845 ORTHO05D005957 0.0e+00 1302.3 1183 70.6
C05p42240 Brassica napus HOM05D004845 ORTHO05D005957 0.0e+00 1296.2 1186 68.7
BcaC05g28184 Brassica carinata HOM05D004845 ORTHO05D005957 0.0e+00 1295.4 1186 68.7
BolC5t32952H Brassica oleracea HOM05D004845 ORTHO05D005957 0.0e+00 1295.4 1186 68.7
CARHR097190 Cardamine hirsuta HOM05D004845 ORTHO05D005957 0.0e+00 1270.8 999 77.6
Aa31LG8G7990 Aethionema arabicum HOM05D004845 ORTHO05D005957 0.0e+00 1202.6 1122 69.7
THA.LOC104817934 Tarenaya hassleriana HOM05D004845 ORTHO05D005957 6.4e-307 1057.7 1270 57.0
THA.LOC104810560 Tarenaya hassleriana HOM05D004845 ORTHO05D005957 3.8e-291 1005.4 1274 53.9
BcaC09g49066 Brassica carinata HOM05D004845 ORTHO05D005957 3.0e-280 969.1 1208 57.0
Manes.04G137600 Manihot esculenta HOM05D004845 ORTHO05D005957 3.2e-173 613.6 1218 42.7
Potri.003G033100 Populus trichocarpa HOM05D004845 ORTHO05D005957 2.2e-166 590.9 1203 42.6
Sabra03G0019000 Salix brachista HOM05D004845 ORTHO05D005957 4.9e-166 589.7 1204 42.9
Duzib160G0801 Durio zibethinus HOM05D004845 ORTHO05D005957 1.2e-164 585.1 1213 41.1
Thecc.06G108000 Theobroma cacao HOM05D004845 ORTHO05D005957 1.3e-163 581.6 1210 41.8
Gohir.D05G135700 Gossypium hirsutum HOM05D004845 ORTHO05D005957 8.1e-161 572.4 1207 41.3
Atru.chr1.3636 Acer truncatum HOM05D004845 ORTHO05D005957 1.8e-160 571.2 1227 41.6
Gohir.A05G133700 Gossypium hirsutum HOM05D004845 ORTHO05D005957 6.9e-160 569.3 1195 41.4
Gorai.009G139700 Gossypium raimondii HOM05D004845 ORTHO05D005957 1.0e-158 565.5 1195 41.5
CiPaw.02G142000 Carya illinoinensis HOM05D004845 ORTHO05D005957 2.5e-157 560.8 1206 41.2
QL05p015844 Quercus lobata HOM05D004845 ORTHO05D005957 9.3e-157 558.9 1311 40.6
TWI31G1049 Tripterygium wilfordii HOM05D004845 ORTHO05D005957 1.3e-155 555.1 1279 41.4
C01p42960 Brassica napus HOM05D004845 ORTHO05D005957 2.1e-153 547.7 838 50.8
Ciclev10024729m.g Citrus clementina HOM05D004845 ORTHO05D005957 6.5e-150 536.2 1235 41.9
Cfa003605 Carpinus fangiana HOM05D004845 ORTHO05D005957 1.9e-149 534.6 1221 41.6
Cpa.g.sc131.35 Carica papaya HOM05D004845 ORTHO05D005957 2.5e-149 534.3 1166 43.1
RcHm_v2.0_Chr2g0142521 Rosa chinensis HOM05D004845 ORTHO05D005957 2.5e-149 534.3 1291 38.2
Glyma.07G012400 Glycine max HOM05D004845 ORTHO05D005957 9.3e-149 532.3 1282 38.1
Dinv30397 Davidia involucrata HOM05D004845 ORTHO05D005957 2.1e-148 531.2 1183 39.8
Glyma.08G196100 Glycine max HOM05D004845 ORTHO05D005957 3.5e-148 530.4 1278 39.0
CANSAT56G3316 Cannabis sativa HOM05D004845 ORTHO05D005957 1.6e-145 521.5 1213 39.2
FAN09G4600 Fragaria x ananassa HOM05D004845 ORTHO05D005957 1.4e-144 518.5 1296 38.6
FAN14G1946 Fragaria x ananassa HOM05D004845 ORTHO05D005957 1.8e-144 518.1 1294 38.0
Manes.11G028800 Manihot esculenta HOM05D004845 ORTHO05D005957 2.4e-144 517.7 1268 40.4
FvH4_6g32970 Fragaria vesca HOM05D004845 ORTHO05D005957 4.1e-144 516.9 1292 38.1
Sed0014548 Sechium edule HOM05D004845 ORTHO05D005957 5.3e-144 516.5 1292 39.2
FAN02G0586 Fragaria x ananassa HOM05D004845 ORTHO05D005957 2.0e-143 514.6 1291 38.3
Prupe.3G052500 Prunus persica HOM05D004845 ORTHO05D005957 2.0e-143 514.6 1296 40.2
Duzib235G0635 Durio zibethinus HOM05D004845 ORTHO05D005957 1.7e-142 511.5 1289 39.4
MELO3C013040.2 Cucumis melo HOM05D004845 ORTHO05D005957 2.5e-141 507.7 1295 38.3
Dinv37932 Davidia involucrata HOM05D004845 ORTHO05D005957 4.2e-141 506.9 1217 39.4
arahy.Tifrunner.gnm1.ann1.JSQ5P9 Arachis hypogaea HOM05D004845 ORTHO05D005957 1.6e-140 505.0 1214 38.5
CsaV3_3G044010 Cucumis sativus L. HOM05D004845 ORTHO05D005957 2.7e-140 504.2 1287 37.8
Ca_23299_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 3.3e-138 497.3 1217 37.6
TAR629G3185 Trochodendron aralioides HOM05D004845 ORTHO05D005957 4.3e-138 496.9 1229 38.2
ClCG07G013620 Citrullus lanatus HOM05D004845 ORTHO05D005957 5.7e-138 496.5 1298 37.3
vmacro18819 Vaccinium macrocarpon HOM05D004845 ORTHO05D005957 2.2e-137 494.6 1181 38.3
MD09G1196000 Malus domestica HOM05D004845 ORTHO05D005957 3.7e-137 493.8 1207 38.5
Lj3g0006882 Lotus japonicus HOM05D004845 ORTHO05D005957 4.1e-136 490.3 1206 37.6
Medtr8g015620 Medicago truncatula HOM05D004845 ORTHO05D005957 6.9e-136 489.6 1211 37.7
Rhsim08G0231600 Rhododendron simsii HOM05D004845 ORTHO05D005957 3.4e-135 487.3 1241 37.3
Sed0023831 Sechium edule HOM05D004845 ORTHO05D005957 5.5e-133 479.9 1215 38.8
arahy.Tifrunner.gnm1.ann1.7F0ZFP Arachis hypogaea HOM05D004845 ORTHO05D005957 4.4e-130 470.3 1213 37.3
Nn1g08771 Nelumbo nucifera HOM05D004845 ORTHO05D005957 1.1e-128 465.7 1248 38.0
VMungo0331G0639 Vigna mungo HOM05D004845 ORTHO05D005957 1.4e-128 465.3 1285 35.2
Phvul.010G141800 Phaseolus vulgaris HOM05D004845 ORTHO05D005957 2.6e-127 461.1 1287 35.8
DCAR_026375 Daucus carota HOM05D004845 ORTHO05D005957 2.2e-121 441.4 1213 37.1
MSTRG.22604 Avicennia marina HOM05D004845 ORTHO05D005957 6.3e-121 439.9 1299 35.9
Sc12g0009860 Simmondsia chinensis HOM05D004845 ORTHO05D005957 1.4e-120 438.7 1197 37.8
GSVIVG01016889001 Vitis vinifera HOM05D004845 ORTHO05D005957 7.0e-120 436.4 1269 33.2
COL.COLO4_30609 Corchorus olitorius HOM05D004845 ORTHO05D005957 1.3e-118 432.2 1178 35.0
Lj3g0020048 Lotus japonicus HOM05D004845 ORTHO05D005957 5.0e-118 430.3 1189 35.6
FAN05G2503 Fragaria x ananassa HOM05D004845 ORTHO05D005957 2.5e-117 427.9 1443 33.7
Migut.I01002 Erythranthe guttata HOM05D004845 ORTHO05D005957 5.5e-117 426.8 1247 35.8
PGR102G0505 Punica granatum HOM05D004845 ORTHO05D005957 1.4e-115 422.2 1199 36.9
Lalb_Chr04g0263091 Lupinus albus HOM05D004845 ORTHO05D005957 4.0e-115 420.6 1288 35.2
Peaxi162Scf00038g01322 Petunia axillaris HOM05D004845 ORTHO05D005957 8.8e-115 419.5 1273 35.8
PSO170G6909 Papaver somniferum HOM05D004845 ORTHO05D005957 5.9e-111 406.8 1195 37.0
Solyc03g121380.3 Solanum lycopersicum HOM05D004845 ORTHO05D005957 2.9e-110 404.4 1252 36.4
Hund07666 Selenicereus undatus HOM05D004845 ORTHO05D005957 3.8e-110 404.1 1196 36.1
Cc04_g02180 Coffea canephora HOM05D004845 ORTHO05D005957 1.9e-109 401.7 1289 36.9
Sopen03g040190 Solanum pennellii HOM05D004845 ORTHO05D005957 9.4e-109 399.4 1269 36.6
ECA232G1750 Erigeron canadensis HOM05D004845 ORTHO05D005957 4.7e-108 397.1 1156 37.4
CAN.G1668.10 Capsicum annuum HOM05D004845 ORTHO05D005957 1.0e-107 396.0 1184 35.6
MD17G1176700 Malus domestica HOM05D004845 ORTHO05D005957 3.0e-107 394.4 1204 35.0
EL10Ac9g21102 Beta vulgaris HOM05D004845 ORTHO05D005957 5.2e-107 393.7 1176 36.9
HanXRQChr09g0276331 Helianthus annuus HOM05D004845 ORTHO05D005957 1.5e-106 392.1 1155 36.1
Lsat_1_v5_gn_4_95940 Lactuca sativa HOM05D004845 ORTHO05D005957 3.7e-105 387.5 1144 36.6
Oeu052809.1 Olea europaea HOM05D004845 ORTHO05D005957 7.0e-104 383.3 1121 35.1
Aqoxy7G00060 Aquilegia oxysepala HOM05D004845 ORTHO05D005957 3.8e-102 377.5 1218 35.6
Oeu026736.3 Olea europaea HOM05D004845 ORTHO05D005957 1.5e-101 375.6 1137 33.6
AUR62023919 Chenopodium quinoa HOM05D004845 ORTHO05D005957 1.3e-97 362.5 1244 32.0
Actinidia32134 Actinidia chinensis HOM05D004845 ORTHO05D005957 1.7e-97 362.1 1093 36.1
HanXRQChr05g0140141 Helianthus annuus HOM05D004845 ORTHO05D005957 1.7e-97 362.1 1138 34.1
DCAR_007608 Daucus carota HOM05D004845 ORTHO05D005957 2.9e-94 351.3 1165 34.0
AUR62038325 Chenopodium quinoa HOM05D004845 ORTHO05D005957 9.5e-93 346.3 1212 30.4
ATR0730G184 Amborella trichopoda HOM05D004845 ORTHO05D005957 2.3e-91 341.7 1217 33.5
SGA_v2.0_scaffold71G23747 Striga asiatica HOM05D004845 ORTHO05D005957 4.4e-90 337.4 1168 33.0
CDE10G0270 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 7.5e-82 310.1 1179 33.7
Nitab4.5_0004848g0010 Nicotiana tabacum HOM05D004845 ORTHO05D005957 2.1e-79 302.0 1137 32.9
Eucgr.J02886 Eucalyptus grandis HOM05D004845 ORTHO05D005957 5.1e-78 297.4 1061 34.6
Zm00001eb006560 Zea mays HOM05D004845 ORTHO05D005957 1.5e-74 285.8 1198 31.3
Psat4g193760 Pisum sativum HOM05D004845 ORTHO05D005957 2.0e-74 285.4 1076 31.8
Ah.01g016900 Amaranthus hybridus HOM05D004845 ORTHO05D005957 1.1e-72 279.6 1167 33.9
Zm00001eb401540 Zea mays HOM05D004845 ORTHO05D005957 1.2e-71 276.2 1199 30.6
SGA_v2.0_scaffold45G16992 Striga asiatica HOM05D004845 ORTHO05D005957 1.8e-67 262.3 374 46.3
CDE10G0876 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 1.9e-64 252.3 373 48.0
SEGI_05846 Sequoiadendron giganteum HOM05D004845 ORTHO05D005957 4.6e-63 247.7 1278 29.7
TPR.G8763 Trifolium pratense HOM05D004845 ORTHO05D005957 4.6e-63 247.7 1264 30.5
Lalb_Chr15g0087461 Lupinus albus HOM05D004845 ORTHO05D005957 2.5e-61 241.9 1092 29.5
C01p42950 Brassica napus HOM05D004845 ORTHO05D005957 4.3e-53 214.5 156 75.6
SEGI_07021 Sequoiadendron giganteum HOM05D004845 ORTHO05D005957 2.8e-52 211.8 1243 29.0
CSS0001379 Camellia sinensis var. sinensis HOM05D004845 ORTHO05D005957 6.2e-52 210.7 663 32.4
unitig_749.g14048 Utricularia gibba HOM05D004845 ORTHO05D005957 1.4e-51 209.5 466 35.2
Actinidia21743 Actinidia chinensis HOM05D004845 ORTHO05D005957 5.3e-51 207.6 243 51.9
Lj5C49T6 Lonicera japonica HOM05D004845 ORTHO05D005957 4.9e-49 201.1 1011 28.9
Actinidia21742 Actinidia chinensis HOM05D004845 ORTHO05D005957 3.2e-48 198.4 925 27.7
HPP92_028291 Vanilla planifolia HOM05D004845 ORTHO05D005957 3.5e-47 194.9 143 68.5
BolC1t04239H Brassica oleracea HOM05D004845 ORTHO05D005957 3.3e-45 188.3 142 72.5
BolC1t04240H Brassica oleracea HOM05D004845 ORTHO05D005957 9.6e-45 186.8 141 71.6
Haze_15920 Corylus avellana HOM05D004845 ORTHO05D005957 1.1e-43 183.3 564 33.0
Lalb_Chr14g0372871 Lupinus albus HOM05D004845 ORTHO05D005957 2.6e-42 178.7 129 65.9
Duzib192G0218 Durio zibethinus HOM05D004845 ORTHO05D005957 2.9e-41 175.3 276 43.8
Medtr8g015610 Medicago truncatula HOM05D004845 ORTHO05D005957 6.5e-41 174.1 615 29.4
Pp3c12_1570 Physcomitrium patens HOM05D004845 ORTHO05D005957 2.7e-39 168.7 353 38.2
MBI01_g37799_MAGBIO Magnolia biondii HOM05D004845 ORTHO05D005957 7.9e-39 167.2 539 31.4
Atru.chr1.3631 Acer truncatum HOM05D001194 ORTHO05D005909 1.8e-38 166.0 306 41.2
SMO334G0114 Selaginella moellendorffii HOM05D004845 ORTHO05D005957 3.7e-36 158.3 371 34.5
Mapoly0021s0057 Marchantia polymorpha HOM05D004845 ORTHO05D005957 9.0e-35 153.7 364 34.6
AagrBONN_evm.TU.Sc2ySwM_344.5033 Anthoceros agrestis HOM05D004845 ORTHO05D005957 1.9e-32 146.0 360 32.8
CDE10G0326 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 1.3e-30 139.8 488 27.3
Lalb_Chr14g0372881 Lupinus albus HOM05D004845 ORTHO05D005957 3.9e-30 138.3 1028 28.4
HPP92_028293 Vanilla planifolia HOM05D004845 ORTHO05D005957 3.4e-26 125.2 165 43.0
Os03g0187100 Oryza sativa ssp. japonica HOM05D004845 ORTHO05D005957 2.9e-25 122.1 352 30.7
unitig_749.g14049 Utricularia gibba HOM05D004845 ORTHO05D005957 3.8e-25 121.7 105 54.3
CBR_g20996 Chara braunii HOM05D004845 ORTHO05D005957 1.0e-22 113.6 165 40.6
Ca_23298_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 1.0e-22 113.6 169 42.0
Haze_15921 Corylus avellana HOM05D004845 ORTHO05D005957 2.3e-22 112.5 240 39.6
SHI11164 Sapria himalayana HOM05D004845 ORTHO05D003034 1.1e-19 103.6 66 69.7
Ca_23296_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 2.6e-18 99.0 233 34.3
BolC1t04238H Brassica oleracea HOM05D004845 ORTHO05D005957 1.2e-15 90.1 56 80.4
Zm00001eb424050 Zea mays HOM05D002942 ORTHO05D003270 2.3e-14 85.9 52 69.2
Cpa.g.sc131.32 Carica papaya HOM05D004845 ORTHO05D005957 2.6e-13 82.4 55 70.9
CBR_g20995 Chara braunii HOM05D004845 ORTHO05D005957 5.9e-10 71.2 142 35.9
SHI11163 Sapria himalayana HOM05D004845 ORTHO05D005957 1.3e-09 70.1 59 61.0
Medtr1g021875 Medicago truncatula HOM05D004845 ORTHO05D005957 1.7e-09 69.7 62 56.5
SHI11167 Sapria himalayana HOM05D004845 ORTHO05D005957 6.5e-09 67.8 205 32.7
Actinidia32135 Actinidia chinensis HOM05D004845 ORTHO05D005957 1.1e-08 67.0 104 41.3
HPP92_028292 Vanilla planifolia HOM05D004845 ORTHO05D005957 7.2e-08 64.3 134 37.3
PGSC0003DMG400002508 Solanum tuberosum HOM05D004845 ORTHO05D005957 2.7e-07 62.4 129 44.2


User provided reference genes

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