Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G21110 Arabidopsis thaliana HOM05D004356 ORTHO05D005542 1.5e-239 832.4 412 100.0
AL3G35050 Arabidopsis lyrata HOM05D004356 ORTHO05D005542 7.0e-229 797.0 412 95.6
CARHR096940 Cardamine hirsuta HOM05D004356 ORTHO05D005542 3.6e-225 784.6 412 94.2
Thhalv10020825m.g Eutrema salsugineum HOM05D004356 ORTHO05D005542 1.5e-223 779.2 413 93.7
A01p33740 Brassica napus HOM05D004356 ORTHO05D005542 3.6e-217 758.1 413 92.0
A03p42020 Brassica napus HOM05D004356 ORTHO05D005542 1.4e-216 756.1 415 91.3
BraA01t03487Z Brassica rapa HOM05D004356 ORTHO05D005542 1.5e-215 752.7 417 91.1
BolC3t17429H Brassica oleracea HOM05D004356 ORTHO05D005542 5.8e-215 750.7 415 90.6
BraA03t13356Z Brassica rapa HOM05D004356 ORTHO05D005542 5.8e-215 750.7 417 90.9
BcaB04g20611 Brassica carinata HOM05D004356 ORTHO05D005542 3.2e-213 745.0 412 90.8
BcaB04g19136 Brassica carinata HOM05D004356 ORTHO05D005542 7.8e-212 740.3 414 89.4
Carub.0003s2101 Capsella rubella HOM05D004356 ORTHO05D005542 1.5e-207 726.1 412 89.1
Sp3g19060 Schrenkiella parvula HOM05D004356 ORTHO05D005542 2.6e-207 725.3 413 88.4
BcaC01g03528 Brassica carinata HOM05D004356 ORTHO05D004900 1.9e-205 719.2 394 90.1
Aa31LG8G7830 Aethionema arabicum HOM05D004356 ORTHO05D005542 1.7e-203 712.6 415 86.0
Carub.0043s0006 Capsella rubella HOM05D004356 ORTHO05D005542 1.2e-201 706.4 412 86.9
THA.LOC104816870 Tarenaya hassleriana HOM05D004356 ORTHO05D005542 1.7e-198 696.0 408 83.6
C03p51440 Brassica napus HOM05D004356 ORTHO05D005542 2.1e-196 689.1 419 84.2
BolC1t04259H Brassica oleracea HOM05D004356 ORTHO05D005542 7.3e-194 680.6 372 90.9
Carub.0003s2106 Capsella rubella HOM05D004356 ORTHO05D005542 9.6e-194 680.2 350 95.7
C01p43120 Brassica napus HOM05D004356 ORTHO05D005542 4.8e-193 677.9 372 90.6
COL.COLO4_11966 Corchorus olitorius HOM05D004356 ORTHO05D005542 5.5e-173 611.3 409 73.6
Duzib093G1902 Durio zibethinus HOM05D004356 ORTHO05D005542 5.1e-171 604.7 409 72.9
Carub.0043s0008 Capsella rubella HOM05D004356 ORTHO05D005542 1.5e-167 593.2 298 96.0
Gohir.D05G224800 Gossypium hirsutum HOM05D004356 ORTHO05D005542 2.2e-166 589.3 409 71.6
CSS0046210 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 8.4e-166 587.4 415 69.9
Ciclev10001304m.g Citrus clementina HOM05D004356 ORTHO05D005542 1.9e-165 586.3 417 70.0
Gorai.009G232200 Gossypium raimondii HOM05D004356 ORTHO05D005542 1.9e-165 586.3 409 71.1
QL09p016893 Quercus lobata HOM05D004356 ORTHO05D005542 5.5e-165 584.7 409 69.4
Gohir.A05G222100 Gossypium hirsutum HOM05D004356 ORTHO05D005542 4.6e-164 581.6 410 71.2
Atru.chr13.1064 Acer truncatum HOM05D004356 ORTHO05D005542 7.9e-164 580.9 413 70.7
Atru.chr13.1070 Acer truncatum HOM05D004356 ORTHO05D005542 7.9e-164 580.9 413 70.7
GSVIVG01009120001 Vitis vinifera HOM05D004356 ORTHO05D005542 1.3e-163 580.1 409 69.7
TAR381G1323 Trochodendron aralioides HOM05D004356 ORTHO05D005542 1.1e-162 577.0 408 70.1
Haze_22357 Corylus avellana HOM05D004356 ORTHO05D005542 1.9e-162 576.2 446 65.0
Carub.0043s0010 Capsella rubella HOM05D004356 ORTHO05D005542 1.6e-161 573.2 394 76.1
MD15G1379800 Malus domestica HOM05D004356 ORTHO05D005542 1.6e-161 573.2 402 71.1
Actinidia33114 Actinidia chinensis HOM05D004356 ORTHO05D005542 2.2e-161 572.8 406 70.7
TWI56G1415 Tripterygium wilfordii HOM05D004356 ORTHO05D005542 2.2e-161 572.8 412 69.7
Nitab4.5_0004523g0040 Nicotiana tabacum HOM05D004356 ORTHO05D005542 1.4e-160 570.1 402 70.4
MD00G1136500 Malus domestica HOM05D004356 ORTHO05D005542 2.4e-160 569.3 402 70.6
Dinv42649 Davidia involucrata HOM05D004356 ORTHO05D005542 5.3e-160 568.2 411 69.3
CSS0005507 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 9.0e-160 567.4 418 69.1
Nitab4.5_0001788g0020 Nicotiana tabacum HOM05D004356 ORTHO05D005542 4.5e-159 565.1 402 70.1
vmacro04684 Vaccinium macrocarpon HOM05D004356 ORTHO05D005542 1.3e-158 563.5 433 64.9
PGSC0003DMG400001802 Solanum tuberosum HOM05D004356 ORTHO05D005542 3.8e-158 562.0 401 68.8
ECA247G0627 Erigeron canadensis HOM05D004356 ORTHO05D005542 1.1e-157 560.5 401 69.3
Solyc01g081300.4 Solanum lycopersicum HOM05D004356 ORTHO05D005542 1.1e-157 560.5 401 68.8
Oeu025262.1 Olea europaea HOM05D004356 ORTHO05D005542 1.4e-157 560.1 351 76.4
CAN.G992.8 Capsicum annuum HOM05D004356 ORTHO05D005542 1.9e-157 559.7 405 69.4
Cc10_g15440 Coffea canephora HOM05D004356 ORTHO05D005542 3.2e-157 558.9 410 67.6
Cc10_g15470 Coffea canephora HOM05D004356 ORTHO05D005542 4.2e-157 558.5 414 66.9
FAN18G3440 Fragaria x ananassa HOM05D004356 ORTHO05D005542 7.2e-157 557.8 409 68.7
Manes.18G062300 Manihot esculenta HOM05D004356 ORTHO05D005542 7.2e-157 557.8 398 69.8
FvH4_5g36000 Fragaria vesca HOM05D004356 ORTHO05D005542 9.4e-157 557.4 409 68.7
CANSAT21G1617 Cannabis sativa HOM05D004356 ORTHO05D005542 2.7e-156 555.8 409 67.7
Migut.M02007 Erythranthe guttata HOM05D004356 ORTHO05D005542 2.7e-156 555.8 400 67.5
CsaV3_2G030020 Cucumis sativus L. HOM05D004356 ORTHO05D005542 6.1e-156 554.7 403 67.2
Sopen01g032880 Solanum pennellii HOM05D004356 ORTHO05D005542 6.1e-156 554.7 349 75.4
FAN04G0906 Fragaria x ananassa HOM05D004356 ORTHO05D005542 7.9e-156 554.3 409 68.0
RcHm_v2.0_Chr1g0327751 Rosa chinensis HOM05D004356 ORTHO05D005542 1.0e-155 553.9 408 68.1
RcHm_v2.0_Chr7g0237731 Rosa chinensis HOM05D004356 ORTHO05D005542 1.0e-155 553.9 401 69.3
SalBow8G3481 Salvia bowleyana HOM05D004356 ORTHO05D005542 1.8e-155 553.1 363 73.0
Eucgr.F00397 Eucalyptus grandis HOM05D004356 ORTHO05D005542 3.0e-155 552.4 369 72.1
HanXRQChr02g0040341 Helianthus annuus HOM05D004356 ORTHO05D005542 3.0e-155 552.4 407 67.8
Sed0016629 Sechium edule HOM05D004356 ORTHO05D005542 3.9e-155 552.0 375 70.7
MELO3C011060.2 Cucumis melo HOM05D004356 ORTHO05D005542 5.1e-155 551.6 398 67.1
Lsat_1_v5_gn_1_2520 Lactuca sativa HOM05D004356 ORTHO05D005542 5.1e-155 551.6 380 72.4
Glyma.14G178900 Glycine max HOM05D004356 ORTHO05D005542 6.7e-155 551.2 361 73.7
PGR102G1623 Punica granatum HOM05D004356 ORTHO05D005542 1.1e-154 550.4 403 67.0
Psat2g068800 Pisum sativum HOM05D004356 ORTHO05D005542 2.0e-154 549.7 402 67.4
Ca_19032_v3 Cicer arietinum L. HOM05D004356 ORTHO05D005542 3.3e-154 548.9 339 76.1
SGA_v2.0_scaffold175G39331 Striga asiatica HOM05D004356 ORTHO05D005542 3.3e-154 548.9 402 67.7
Rhsim07G0209000 Rhododendron simsii HOM05D004356 ORTHO05D005542 1.3e-153 547.0 424 65.8
Lalb_Chr10g0102631 Lupinus albus HOM05D004356 ORTHO05D005542 2.8e-153 545.8 361 73.7
Medtr5g065270 Medicago truncatula HOM05D004356 ORTHO05D005542 2.8e-153 545.8 410 66.3
MSTRG.16368 Avicennia marina HOM05D004356 ORTHO05D005542 3.7e-153 545.4 366 71.0
CiPaw.16G056200 Carya illinoinensis HOM05D004356 ORTHO05D005542 4.8e-153 545.0 352 74.4
Peaxi162Scf00592g00454 Petunia axillaris HOM05D004356 ORTHO05D005542 6.3e-153 544.7 429 63.2
Aqoxy3G00172 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 1.1e-152 543.9 401 67.3
Duzib106G0787 Durio zibethinus HOM05D004356 ORTHO05D005542 1.1e-152 543.9 409 67.7
AUR62027839 Chenopodium quinoa HOM05D004356 ORTHO05D005542 1.4e-152 543.5 345 74.5
FAN08G0112 Fragaria x ananassa HOM05D004356 ORTHO05D005542 1.8e-152 543.1 436 64.4
Lj1g0019049 Lotus japonicus HOM05D004356 ORTHO05D005542 1.8e-152 543.1 402 67.2
TPR.G16206 Trifolium pratense HOM05D004356 ORTHO05D005542 1.8e-152 543.1 350 74.0
arahy.Tifrunner.gnm1.ann1.QY7301 Arachis hypogaea HOM05D004356 ORTHO05D005542 3.1e-152 542.3 369 71.0
Cc07_g18320 Coffea canephora HOM05D004356 ORTHO05D005542 3.1e-152 542.3 349 72.2
Aqoxy1G00182 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 4.1e-152 542.0 348 73.9
Hund16880 Selenicereus undatus HOM05D004356 ORTHO05D005542 6.9e-152 541.2 332 76.8
TPR.G30120 Trifolium pratense HOM05D004356 ORTHO05D005542 2.6e-151 539.3 351 72.9
Phvul.008G178500 Phaseolus vulgaris HOM05D004356 ORTHO05D005542 3.4e-151 538.9 348 73.9
Ah.05g170540 Amaranthus hybridus HOM05D004356 ORTHO05D005542 1.7e-150 536.6 341 74.5
arahy.Tifrunner.gnm1.ann1.VLAW7V Arachis hypogaea HOM05D004356 ORTHO05D005542 1.7e-150 536.6 341 73.9
VMungo0647G1889 Vigna mungo HOM05D004356 ORTHO05D005542 1.7e-150 536.6 349 73.6
arahy.Tifrunner.gnm1.ann1.JC6ZCB Arachis hypogaea HOM05D004356 ORTHO05D005542 2.2e-150 536.2 405 65.4
CDE04G0095 Ceratophyllum demersum HOM05D004356 ORTHO05D005542 2.9e-150 535.8 392 67.3
PSO675G0521 Papaver somniferum HOM05D004356 ORTHO05D005542 5.0e-150 535.0 333 75.1
PSO675G5075 Papaver somniferum HOM05D004356 ORTHO05D005542 1.4e-149 533.5 376 68.4
EL10Ac9g21432 Beta vulgaris HOM05D000128 ORTHO05D005542 1.9e-149 533.1 346 74.0
Cfa013712 Carpinus fangiana HOM05D004356 ORTHO05D005542 1.9e-149 533.1 409 65.8
Dinv44826 Davidia involucrata HOM05D004356 ORTHO05D005542 1.9e-149 533.1 375 70.7
Potri.017G051500 Populus trichocarpa HOM05D004356 ORTHO05D005542 4.2e-149 531.9 372 72.0
unitig_37.g12048 Utricularia gibba HOM05D004356 ORTHO05D005542 2.7e-148 529.3 333 73.6
Glyma.02G211300 Glycine max HOM05D004356 ORTHO05D005542 3.6e-148 528.9 356 71.3
PSO017G1942 Papaver somniferum HOM05D004356 ORTHO05D005542 7.9e-148 527.7 376 67.8
ATR0022G038 Amborella trichopoda HOM05D004356 ORTHO05D005542 1.8e-147 526.6 339 72.9
Sabra17G0038400 Salix brachista HOM05D004356 ORTHO05D005542 1.1e-146 523.9 416 66.6
Sabra17G0043000 Salix brachista HOM05D004356 ORTHO05D005542 1.1e-146 523.9 416 66.6
Lj1g0006758 Lotus japonicus HOM05D004356 ORTHO05D005542 3.3e-146 522.3 336 74.7
Os09g0467100 Oryza sativa ssp. japonica HOM05D004356 ORTHO05D005542 3.3e-146 522.3 327 74.0
Sabra17G0037700 Salix brachista HOM05D004356 ORTHO05D005542 2.8e-145 519.2 416 66.1
Mapoly0044s0034 Marchantia polymorpha HOM05D004356 ORTHO05D005542 3.7e-145 518.8 345 70.7
Zm00001eb284720 Zea mays HOM05D004356 ORTHO05D005542 1.2e-143 513.8 327 72.8
Thecc.08G065800 Theobroma cacao HOM05D004356 ORTHO05D005542 1.3e-142 510.4 297 81.5
SEGI_03509 Sequoiadendron giganteum HOM05D004356 ORTHO05D005542 2.5e-141 506.1 358 68.4
HPP92_011797 Vanilla planifolia HOM05D004356 ORTHO05D005542 5.5e-141 505.0 382 63.6
AagrBONN_evm.TU.Sc2ySwM_344.5470 Anthoceros agrestis HOM05D004356 ORTHO05D005542 8.0e-140 501.1 329 70.8
AUR62018997 Chenopodium quinoa HOM05D004356 ORTHO05D005542 1.0e-139 500.7 315 75.2
Pp3c23_9790 Physcomitrium patens HOM05D004356 ORTHO05D005542 4.4e-138 495.4 408 60.0
arahy.Tifrunner.gnm1.ann1.3Z7WCZ Arachis hypogaea HOM05D004356 ORTHO05D005542 2.2e-137 493.0 405 62.2
SMO340G0097 Selaginella moellendorffii HOM05D004356 ORTHO05D005542 6.5e-134 481.5 336 66.7
Prupe.1G526100 Prunus persica HOM05D004356 ORTHO05D005542 1.9e-133 479.9 283 79.5
arahy.Tifrunner.gnm1.ann1.1YQ32R Arachis hypogaea HOM05D004356 ORTHO05D005542 9.8e-130 467.6 324 68.5
arahy.Tifrunner.gnm1.ann1.L8UQBM Arachis hypogaea HOM05D004356 ORTHO05D005542 5.5e-125 451.8 277 74.7
CBR_g27760 Chara braunii HOM05D004356 ORTHO05D005542 1.2e-122 444.1 339 63.4
Sc23g0000510 Simmondsia chinensis HOM05D004356 ORTHO05D005542 4.4e-122 442.2 340 65.0
Lj4C732G13 Lonicera japonica HOM05D004356 ORTHO05D005542 1.7e-118 430.3 441 55.1
Cre03.g202113 Chlamydomonas reinhardtii HOM05D004356 ORTHO05D005542 2.4e-112 409.8 339 57.8
SHI20358 Sapria himalayana HOM05D004356 ORTHO05D005542 1.6e-108 397.1 315 61.6
MCO12G379 Micromonas commoda HOM05D004356 ORTHO05D005542 2.8e-108 396.4 335 58.2
Cpa.g.sc198.38 Carica papaya HOM05D004356 ORTHO05D005542 1.0e-107 394.4 262 73.3
Gohir.A05G222001 Gossypium hirsutum HOM05D004356 ORTHO05D005542 1.4e-104 384.0 339 61.4
PRCOL_00002575 Prasinoderma coloniale HOM05D004356 ORTHO05D005542 9.5e-101 371.3 292 60.6
CiPaw.16G030800 Carya illinoinensis HOM05D004356 ORTHO05D005542 5.1e-94 349.0 272 65.1
Nn1g08498 Nelumbo nucifera HOM05D004356 ORTHO05D005542 2.4e-83 313.5 239 67.4
Actinidia29604 Actinidia chinensis HOM05D004356 ORTHO05D005542 2.6e-82 310.1 188 77.7
ClCG00G002050 Citrullus lanatus HOM05D004356 ORTHO05D005542 8.4e-81 305.1 225 66.7
arahy.Tifrunner.gnm1.ann1.PGQR8U Arachis hypogaea HOM05D004356 ORTHO05D005542 4.3e-77 292.7 303 52.8
Carub.0516s0001 Capsella rubella HOM05D004356 ORTHO05D005542 3.4e-74 283.1 143 93.7
Nn1g08495 Nelumbo nucifera HOM05D004356 ORTHO05D005542 4.0e-67 259.6 157 77.7
ClCG08G011430 Citrullus lanatus HOM05D004356 ORTHO05D005542 6.9e-67 258.8 383 40.2
RcHm_v2.0_Chr3g0491851 Rosa chinensis HOM05D004356 ORTHO05D005542 1.8e-62 244.2 275 49.1
DCAR_012871 Daucus carota HOM05D004356 ORTHO05D005542 4.6e-55 219.5 309 42.1
arahy.Tifrunner.gnm1.ann1.X0GHYT Arachis hypogaea HOM05D004356 ORTHO05D005542 8.7e-54 215.3 235 51.1
arahy.Tifrunner.gnm1.ann1.HK5GW2 Arachis hypogaea HOM05D004356 ORTHO05D005542 7.6e-50 202.2 209 52.6
arahy.Tifrunner.gnm1.ann1.F88CCI Arachis hypogaea HOM05D004356 ORTHO05D005542 8.2e-44 182.2 272 40.8
Psat0s4321g0120 Pisum sativum HOM05D004356 ORTHO05D005542 6.9e-43 179.1 116 71.6
arahy.Tifrunner.gnm1.ann1.F3AJY4 Arachis hypogaea HOM05D004356 ORTHO05D005542 1.5e-42 177.9 146 65.1
arahy.Tifrunner.gnm1.ann1.D1TUAT Arachis hypogaea HOM05D004356 ORTHO05D005542 8.5e-41 172.2 130 63.1
arahy.Tifrunner.gnm1.ann1.FASD2W Arachis hypogaea HOM05D004356 ORTHO05D005542 4.6e-39 166.4 146 63.0
arahy.Tifrunner.gnm1.ann1.MUPT6T Arachis hypogaea HOM05D004356 ORTHO05D005542 4.6e-39 166.4 146 63.0
arahy.Tifrunner.gnm1.ann1.6VP8YS Arachis hypogaea HOM05D004356 ORTHO05D005542 2.0e-37 161.0 148 58.1
EL10As8g23848 Beta vulgaris HOM05D004356 ORTHO05D090264 2.6e-29 134.0 231 36.8
arahy.Tifrunner.gnm1.ann1.H4UIY2 Arachis hypogaea HOM05D004356 ORTHO05D005542 1.1e-27 128.6 159 45.3
arahy.Tifrunner.gnm1.ann1.JXGW17 Arachis hypogaea HOM05D004356 ORTHO05D005542 1.1e-27 128.6 159 45.3
Cfa024383 Carpinus fangiana HOM05D004356 ORTHO05D124745 1.8e-19 101.3 173 35.8
Zm00001eb297900 Zea mays HOM05D004356 ORTHO05D005542 5.9e-18 96.3 53 75.5
Zm00001eb297960 Zea mays HOM05D004356 ORTHO05D444542 5.9e-18 96.3 53 75.5
arahy.Tifrunner.gnm1.ann1.8IDC4C Arachis hypogaea HOM05D004356 ORTHO05D005542 1.1e-11 75.5 51 68.6
arahy.Tifrunner.gnm1.ann1.J07EWC Arachis hypogaea HOM05D004356 ORTHO05D005542 4.0e-06 57.0 39 61.5
arahy.Tifrunner.gnm1.ann1.E3H3WY Arachis hypogaea HOM05D000075 ORTHO05D000073 5.2e-06 56.6 45 55.6


User provided reference genes

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