Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G21060 Arabidopsis thaliana HOM05D004210 ORTHO05D005017 0.0e+00 1083.6 548 100.0
Carub.0003s2096 Capsella rubella HOM05D004210 ORTHO05D005017 2.8e-294 1014.6 549 92.5
Sp3g19020 Schrenkiella parvula HOM05D004210 ORTHO05D005017 1.0e-283 979.5 551 89.7
AL3G35010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 3.0e-283 978.0 549 92.2
Thhalv10020461m.g Eutrema salsugineum HOM05D004210 ORTHO05D005017 4.3e-282 974.2 551 89.7
Aa31LG8G7780 Aethionema arabicum HOM05D004210 ORTHO05D005017 3.2e-277 958.0 551 87.7
BraA01t03490Z Brassica rapa HOM05D004210 ORTHO05D005017 1.7e-275 952.2 552 88.0
C01p43210 Brassica napus HOM05D004210 ORTHO05D005017 9.5e-274 946.4 552 87.3
BcaC09g49045 Brassica carinata HOM05D004210 ORTHO05D005017 1.2e-273 946.0 552 87.3
CARHR096890 Cardamine hirsuta HOM05D004210 ORTHO05D005017 2.1e-273 945.3 549 86.5
BolC1t04267H Brassica oleracea HOM05D004210 ORTHO05D005017 1.1e-272 943.0 552 87.0
BcaB04g20615 Brassica carinata HOM05D004210 ORTHO05D005017 7.1e-269 930.2 552 85.7
A01p33790 Brassica napus HOM05D004210 ORTHO05D005017 3.9e-251 871.3 515 87.0
THA.LOC104804661 Tarenaya hassleriana HOM05D004210 ORTHO05D005017 1.1e-250 869.8 544 80.9
AL249U10010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 1.5e-234 816.2 402 98.5
Cpa.g.sc138.49 Carica papaya HOM05D004210 ORTHO05D005017 4.5e-231 804.7 548 75.2
CiPaw.14G037100 Carya illinoinensis HOM05D004210 ORTHO05D005017 2.1e-228 795.8 546 73.1
Atru.chr10.436 Acer truncatum HOM05D004210 ORTHO05D005017 1.0e-227 793.5 545 73.9
Dinv04121 Davidia involucrata HOM05D004210 ORTHO05D005017 1.3e-227 793.1 556 73.0
Manes.13G078700 Manihot esculenta HOM05D004210 ORTHO05D005017 3.3e-226 788.5 552 73.0
Duzib114G0085 Durio zibethinus HOM05D004210 ORTHO05D005017 6.3e-225 784.3 552 72.3
Thecc.10G122400 Theobroma cacao HOM05D004210 ORTHO05D005017 6.9e-224 780.8 552 72.1
Potri.019G000900 Populus trichocarpa HOM05D004210 ORTHO05D005017 1.5e-223 779.6 545 72.5
CANSAT56G1750 Cannabis sativa HOM05D004210 ORTHO05D005017 2.0e-223 779.2 514 76.3
COL.COLO4_16323 Corchorus olitorius HOM05D004210 ORTHO05D005017 1.0e-222 776.9 552 71.7
Haze_03415 Corylus avellana HOM05D004210 ORTHO05D005017 1.3e-222 776.5 550 71.6
Sabra16G0191800 Salix brachista HOM05D004210 ORTHO05D005017 1.3e-222 776.5 542 73.1
Potri.001G305500 Populus trichocarpa HOM05D004210 ORTHO05D005017 5.0e-222 774.6 543 72.9
FvH4_2g10510 Fragaria vesca HOM05D004210 ORTHO05D005017 1.4e-221 773.1 511 76.1
Prupe.5G058900 Prunus persica HOM05D004210 ORTHO05D005017 1.4e-221 773.1 513 77.0
RcHm_v2.0_Chr6g0268021 Rosa chinensis HOM05D004210 ORTHO05D005017 1.9e-221 772.7 511 76.5
FAN24G2713 Fragaria x ananassa HOM05D004210 ORTHO05D005017 1.2e-220 770.0 511 75.9
Sabra19G0005800 Salix brachista HOM05D004210 ORTHO05D005017 2.1e-220 769.2 558 70.1
Sabra19G0014200 Salix brachista HOM05D004210 ORTHO05D005017 2.7e-220 768.8 558 70.1
FAN27G0821 Fragaria x ananassa HOM05D004210 ORTHO05D005017 3.6e-220 768.5 516 75.6
FAN15G0031 Fragaria x ananassa HOM05D004210 ORTHO05D005017 1.4e-219 766.5 511 75.5
Ciclev10014800m.g Citrus clementina HOM05D004210 ORTHO05D005017 2.3e-219 765.8 545 71.7
FAN20G0431 Fragaria x ananassa HOM05D004210 ORTHO05D005017 2.3e-219 765.8 511 75.5
CsaV3_5G035020 Cucumis sativus L. HOM05D004210 ORTHO05D005017 2.0e-218 762.7 551 71.5
MELO3C012312.2 Cucumis melo HOM05D004210 ORTHO05D005017 2.2e-217 759.2 551 71.0
Gohir.A13G003500 Gossypium hirsutum HOM05D004210 ORTHO05D005017 2.8e-217 758.8 557 70.4
MD07G1061200 Malus domestica HOM05D004210 ORTHO05D005017 4.8e-217 758.1 486 77.0
ClCG05G022120 Citrullus lanatus HOM05D004210 ORTHO05D005017 1.1e-216 756.9 551 71.0
MD02G1259400 Malus domestica HOM05D004210 ORTHO05D005017 1.4e-216 756.5 486 76.3
Gorai.013G003300 Gossypium raimondii HOM05D004210 ORTHO05D005017 2.4e-216 755.7 556 70.1
Gohir.D13G003400 Gossypium hirsutum HOM05D004210 ORTHO05D005017 3.1e-216 755.4 556 70.1
Glyma.13G124200 Glycine max HOM05D004210 ORTHO05D005017 1.2e-215 753.4 544 71.5
Glyma.06G315900 Glycine max HOM05D004210 ORTHO05D005017 2.0e-215 752.7 538 72.1
Sed0005167 Sechium edule HOM05D004210 ORTHO05D005017 1.7e-214 749.6 548 70.8
Nn5g30473 Nelumbo nucifera HOM05D004210 ORTHO05D005017 2.2e-214 749.2 555 68.8
QL04p049870 Quercus lobata HOM05D004210 ORTHO05D005017 1.1e-213 746.9 478 77.2
Glyma.05G087400 Glycine max HOM05D004210 ORTHO05D005017 9.4e-213 743.8 541 71.5
Peaxi162Scf00647g00139 Petunia axillaris HOM05D004210 ORTHO05D005017 1.2e-212 743.4 524 72.7
vmacro20845 Vaccinium macrocarpon HOM05D004210 ORTHO05D005017 2.7e-212 742.3 516 73.1
arahy.Tifrunner.gnm1.ann1.374KBL Arachis hypogaea HOM05D004210 ORTHO05D005017 6.1e-212 741.1 542 69.4
arahy.Tifrunner.gnm1.ann1.3JDG4T Arachis hypogaea HOM05D004210 ORTHO05D005017 6.1e-212 741.1 542 69.6
Nitab4.5_0001611g0030 Nicotiana tabacum HOM05D004210 ORTHO05D005017 2.3e-211 739.2 535 71.6
Phvul.008G161500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 2.3e-211 739.2 543 70.5
Cc08_g06030 Coffea canephora HOM05D004210 ORTHO05D005017 3.0e-211 738.8 523 70.9
MSTRG.20468 Avicennia marina HOM05D004210 ORTHO05D005017 8.8e-211 737.3 506 73.3
Lj3g0025560 Lotus japonicus HOM05D004210 ORTHO05D005017 2.0e-210 736.1 549 69.4
Sed0024731 Sechium edule HOM05D004210 ORTHO05D005017 2.6e-210 735.7 551 68.8
arahy.Tifrunner.gnm1.ann1.A6SQAT Arachis hypogaea HOM05D004210 ORTHO05D005017 9.7e-210 733.8 543 69.2
GSVIVG01018295001 Vitis vinifera HOM05D004210 ORTHO05D005017 9.7e-210 733.8 557 69.8
CSS0018495 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 2.2e-209 732.6 546 69.0
Actinidia18370 Actinidia chinensis HOM05D004210 ORTHO05D005017 3.7e-209 731.9 539 70.1
TPR.G14605 Trifolium pratense HOM05D004210 ORTHO05D005017 6.3e-209 731.1 535 69.3
TAR376G0596 Trochodendron aralioides HOM05D004210 ORTHO05D005017 6.3e-209 731.1 562 67.4
Migut.B01123 Erythranthe guttata HOM05D004210 ORTHO05D005017 1.4e-208 729.9 517 71.8
Rhsim04G0193600 Rhododendron simsii HOM05D004210 ORTHO05D005017 4.1e-208 728.4 516 71.1
Glyma.08G229800 Glycine max HOM05D004210 ORTHO05D005017 1.2e-207 726.9 546 68.9
Lj8A287G21 Lonicera japonica HOM05D004210 ORTHO05D005017 1.2e-207 726.9 522 71.5
Nitab4.5_0004014g0070 Nicotiana tabacum HOM05D004210 ORTHO05D005017 2.0e-207 726.1 531 71.2
PGR142G1915 Punica granatum HOM05D004210 ORTHO05D005017 3.5e-207 725.3 562 67.6
Medtr8g041740 Medicago truncatula HOM05D004210 ORTHO05D005017 1.3e-206 723.4 535 68.6
SalBow4G0418 Salvia bowleyana HOM05D004210 ORTHO05D005017 2.2e-206 722.6 517 70.6
Phvul.003G276000 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 2.9e-206 722.2 546 68.5
Sc18g0006930 Simmondsia chinensis HOM05D004210 ORTHO05D005017 1.5e-205 719.9 550 68.0
Sopen01g040660 Solanum pennellii HOM05D004210 ORTHO05D005017 5.5e-205 718.0 516 70.5
TPR.G24022 Trifolium pratense HOM05D004210 ORTHO05D005017 5.5e-205 718.0 534 68.4
Medtr8g045440 Medicago truncatula HOM05D004210 ORTHO05D005017 3.6e-204 715.3 549 66.7
Solyc01g096950.4 Solanum lycopersicum HOM05D004210 ORTHO05D005017 3.6e-204 715.3 516 70.7
VMungo0251G3202 Vigna mungo HOM05D004210 ORTHO05D005017 1.8e-203 713.0 546 67.6
Psat4g180480 Pisum sativum HOM05D004210 ORTHO05D005017 3.0e-203 712.2 541 67.3
PGSC0003DMG400027522 Solanum tuberosum HOM05D004210 ORTHO05D005017 3.0e-203 712.2 527 69.4
Lalb_Chr01g0007661 Lupinus albus HOM05D004210 ORTHO05D005017 7.4e-202 707.6 536 68.3
Glyma.04G129500 Glycine max HOM05D004210 ORTHO05D005017 3.7e-201 705.3 487 73.9
Sabra19G0013500 Salix brachista HOM05D004210 ORTHO05D005017 2.4e-200 702.6 509 70.3
TAR625G1450 Trochodendron aralioides HOM05D004210 ORTHO05D005017 5.3e-200 701.4 545 67.7
Sabra19G0006000 Salix brachista HOM05D004210 ORTHO05D005017 2.0e-199 699.5 509 70.1
Duzib106G1791 Durio zibethinus HOM05D004210 ORTHO05D005017 7.7e-199 697.6 515 70.1
Aqoxy1G00569 Aquilegia oxysepala HOM05D004210 ORTHO05D005017 1.9e-197 693.0 565 63.5
DCAR_002139 Daucus carota HOM05D004210 ORTHO05D005017 2.5e-197 692.6 548 65.7
Ca_05576_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 2.1e-196 689.5 553 64.6
TAR381G0930 Trochodendron aralioides HOM05D004210 ORTHO05D005017 6.1e-196 688.0 470 71.3
HPP92_001742 Vanilla planifolia HOM05D004210 ORTHO05D005017 1.4e-195 686.8 557 64.6
Manes.13G077346 Manihot esculenta HOM05D004210 ORTHO05D005017 5.2e-195 684.9 404 80.0
Lsat_1_v5_gn_4_138820 Lactuca sativa HOM05D004210 ORTHO05D005017 8.8e-195 684.1 564 65.4
Lalb_Chr18g0049111 Lupinus albus HOM05D004210 ORTHO05D005017 1.5e-194 683.3 537 64.6
Hund00055 Selenicereus undatus HOM05D004210 ORTHO05D005017 2.0e-194 682.9 640 58.3
PSO541G0139 Papaver somniferum HOM05D004210 ORTHO05D005017 3.4e-194 682.2 559 64.6
Psat4g200760 Pisum sativum HOM05D004210 ORTHO05D005017 7.5e-194 681.0 532 66.4
CDE04G1921 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 2.8e-193 679.1 560 64.1
ECA248G0690 Erigeron canadensis HOM05D004210 ORTHO05D005017 2.8e-193 679.1 523 66.9
AUR62025703 Chenopodium quinoa HOM05D004210 ORTHO05D005017 4.8e-193 678.3 563 62.7
Hma1.2p1_0892F.1_g233380 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 7.0e-192 674.5 520 68.5
Hund06390 Selenicereus undatus HOM05D004210 ORTHO05D005017 7.0e-192 674.5 532 66.0
AUR62001320 Chenopodium quinoa HOM05D004210 ORTHO05D005017 2.7e-191 672.5 563 62.0
Medtr8g045463 Medicago truncatula HOM05D004210 ORTHO05D005017 3.5e-191 672.2 536 64.7
Medtr8g045470 Medicago truncatula HOM05D004210 ORTHO05D005017 3.5e-191 672.2 536 64.7
CDE07G1685 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 4.5e-191 671.8 562 63.2
PSO478G0462 Papaver somniferum HOM05D004210 ORTHO05D005017 7.7e-191 671.0 559 63.7
ATR0661G188 Amborella trichopoda HOM05D004210 ORTHO05D005017 2.5e-189 666.0 517 66.3
EL10Ac7g18124 Beta vulgaris HOM05D004210 ORTHO05D005017 9.4e-189 664.1 537 64.1
VMungo0647G0038 Vigna mungo HOM05D004210 ORTHO05D005017 9.4e-189 664.1 504 68.8
Oeu012473.1 Olea europaea HOM05D004210 ORTHO05D005017 2.7e-188 662.5 487 69.8
Oeu027040.1 Olea europaea HOM05D004210 ORTHO05D005017 1.0e-187 660.6 462 71.9
HanXRQChr09g0259631 Helianthus annuus HOM05D004210 ORTHO05D005017 1.5e-181 640.2 542 62.9
SGA_v2.0_scaffold196G40978 Striga asiatica HOM05D004210 ORTHO05D005017 9.5e-181 637.5 537 62.6
Ca_13103_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 4.4e-178 628.6 552 60.9
Zm00001eb007220 Zea mays HOM05D004210 ORTHO05D005017 4.1e-168 595.5 568 56.7
Os03g0207900 Oryza sativa ssp. japonica HOM05D004210 ORTHO05D005017 1.4e-163 580.5 530 59.1
HanXRQChr14g0446551 Helianthus annuus HOM05D004210 ORTHO05D005017 3.4e-162 575.9 497 60.6
ECA238G3001 Erigeron canadensis HOM05D004210 ORTHO05D005017 4.3e-157 558.9 515 58.3
Psat2g059840 Pisum sativum HOM05D004210 ORTHO05D005017 6.2e-156 555.1 555 56.0
Mapoly0028s0049 Marchantia polymorpha HOM05D004210 ORTHO05D005017 2.4e-152 543.1 556 54.1
Ca_24139_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 5.1e-150 535.4 539 56.0
TWI75G1118 Tripterygium wilfordii HOM05D004210 ORTHO05D005017 3.6e-148 529.3 499 58.7
Pp3c12_14420 Physcomitrium patens HOM05D004210 ORTHO05D005017 3.4e-146 522.7 532 53.6
Eucgr.G02654 Eucalyptus grandis HOM05D004210 ORTHO05D005017 7.9e-135 485.0 431 61.5
AagrBONN_evm.TU.Sc2ySwM_344.4521 Anthoceros agrestis HOM05D004210 ORTHO05D005017 5.1e-134 482.3 557 49.6
Dinv30359 Davidia involucrata HOM05D004210 ORTHO05D005017 1.3e-132 477.6 366 69.1
Lalb_Chr03g0032281 Lupinus albus HOM05D004210 ORTHO05D005017 1.4e-131 474.2 428 61.9
Ca_24147_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 2.0e-130 470.3 352 69.6
Phvul.011G184500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 2.4e-128 463.4 474 52.7
AagrBONN_evm.TU.Sc2ySwM_368.940 Anthoceros agrestis HOM05D004210 ORTHO05D005017 4.2e-128 462.6 584 46.7
SMO145G0186 Selaginella moellendorffii HOM05D004210 ORTHO05D005017 2.5e-125 453.4 549 48.6
unitig_26.g9497 Utricularia gibba HOM05D004210 ORTHO05D005017 3.3e-125 453.0 375 64.5
CSS0025743 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 2.4e-107 393.7 399 57.1
SEGI_20000 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 8.2e-100 368.6 306 57.8
CBR_g18561 Chara braunii HOM05D004210 ORTHO05D005017 6.1e-95 352.4 499 42.9
CBR_g10843 Chara braunii HOM05D004210 ORTHO05D005017 4.5e-90 336.3 572 40.4
Dinv18710 Davidia involucrata HOM05D004210 ORTHO05D005017 9.1e-75 285.4 315 54.0
MBI16_g14436_MAGBIO Magnolia biondii HOM05D004210 ORTHO05D005017 5.6e-64 249.6 302 49.7
Dinv18720 Davidia involucrata HOM05D004210 ORTHO05D005017 3.9e-57 226.9 163 76.1
Cre03.g195750 Chlamydomonas reinhardtii HOM05D004210 ORTHO05D005017 1.1e-56 225.3 464 33.2
SEGI_15684 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 7.5e-53 212.6 225 56.4
Pp3c4_7580 Physcomitrium patens HOM05D004210 ORTHO05D005017 1.5e-45 188.3 386 36.0
PRCOL_00000885 Prasinoderma coloniale HOM05D004210 ORTHO05D005017 1.5e-45 188.3 499 31.7
Atru.chr12.1163 Acer truncatum HOM05D004210 ORTHO05D005017 2.6e-45 187.6 91 95.6
Aa31LG8G7760 Aethionema arabicum HOM05D004210 ORTHO05D005017 1.7e-44 184.9 118 79.7
MCO03G571 Micromonas commoda HOM05D004210 ORTHO05D005017 2.2e-44 184.5 441 31.3
Glyma.12G171232 Glycine max HOM05D004210 ORTHO05D013328 1.1e-40 172.2 96 80.2
Rhsim01G0121500 Rhododendron simsii HOM05D004210 ORTHO05D005017 3.6e-39 167.2 109 79.8
Cfa023087 Carpinus fangiana HOM05D004210 ORTHO05D005017 1.3e-36 158.7 405 30.1
VMungo1127G1364 Vigna mungo HOM05D004210 ORTHO05D005017 9.2e-35 152.5 169 49.1
Dinv18721 Davidia involucrata HOM05D004210 ORTHO05D005017 2.1e-31 141.4 157 48.4
Atru.chr12.1162 Acer truncatum HOM05D004210 ORTHO05D005017 1.3e-28 132.1 144 56.9
Manes.13G077544 Manihot esculenta HOM05D004210 ORTHO05D005017 6.4e-28 129.8 161 54.0
Medtr5g069620 Medicago truncatula HOM05D004210 ORTHO05D005017 9.0e-22 109.4 79 63.3
Nn1g02745 Nelumbo nucifera HOM05D000508 ORTHO05D000371 1.6e-18 98.6 160 39.4
BcaC01g03529 Brassica carinata HOM05D004210 ORTHO05D005017 4.8e-15 87.0 98 51.0
Hma1.2p1_0892F.1_g233370 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 1.2e-13 82.4 40 90.0
unitig_26.g9496 Utricularia gibba HOM05D004210 ORTHO05D005017 1.1e-11 75.9 48 68.8
Nn1g04650 Nelumbo nucifera HOM05D004210 ORTHO05D005017 1.9e-11 75.1 40 80.0
SHI06412 Sapria himalayana HOM05D004210 ORTHO05D000023 5.6e-08 63.5 33 75.8
Lalb_Chr03g0032271 Lupinus albus HOM05D004210 ORTHO05D005017 7.4e-08 63.2 32 81.2
Aa31LG2G8460 Aethionema arabicum HOM05D000992 ORTHO05D001928 8.1e-07 59.7 233 24.9
BcaC03g17042 Brassica carinata HOM05D000992 ORTHO05D001928 1.8e-06 58.5 246 26.0
C02p49570 Brassica napus HOM05D000992 ORTHO05D001928 6.9e-06 56.6 246 25.6
BcaB04g21125 Brassica carinata HOM05D058416 ORTHO05D095930 9.0e-06 56.2 61 57.4


User provided reference genes

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