Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G21055 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 2.0e-47 192.2 104 100.0
AL3G35000 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 2.4e-45 185.3 104 95.2
CARHR096900 Cardamine hirsuta HOM05D004268 ORTHO05D004958 5.1e-43 177.6 104 92.3
Carub.0003s2095 Capsella rubella HOM05D004268 ORTHO05D004958 3.3e-42 174.9 107 89.7
BcaC05g28213 Brassica carinata HOM05D004268 ORTHO05D004958 4.3e-42 174.5 105 90.5
C05p43040 Brassica napus HOM05D004268 ORTHO05D004958 4.3e-42 174.5 105 90.5
BolC5t33035H Brassica oleracea HOM05D004268 ORTHO05D004958 4.3e-42 174.5 105 90.5
Thhalv10021813m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 6.2e-41 170.6 107 87.9
C03p51410 Brassica napus HOM05D004268 ORTHO05D004958 1.1e-40 169.9 107 87.9
BcaB06g26173 Brassica carinata HOM05D004268 ORTHO05D004958 1.4e-40 169.5 105 87.6
BraA03t13354Z Brassica rapa HOM05D004268 ORTHO05D004958 3.1e-40 168.3 107 86.9
A05p27660 Brassica napus HOM05D004268 ORTHO05D004958 4.0e-40 167.9 105 88.6
BraA05t21659Z Brassica rapa HOM05D004268 ORTHO05D004958 4.0e-40 167.9 105 86.7
BcaC01g03530 Brassica carinata HOM05D004268 ORTHO05D004958 8.4e-38 160.2 107 83.2
BolC3t17427H Brassica oleracea HOM05D004268 ORTHO05D004958 8.4e-38 160.2 107 83.2
BcaC08g43309 Brassica carinata HOM05D004268 ORTHO05D004958 1.7e-30 136.0 105 73.3
C06p06560 Brassica napus HOM05D004268 ORTHO05D004958 1.7e-30 136.0 105 73.3
BolC6t35768H Brassica oleracea HOM05D004268 ORTHO05D004958 1.7e-30 136.0 105 73.3
C01p43220 Brassica napus HOM05D004268 ORTHO05D004958 6.5e-30 134.0 107 72.0
A06p02510 Brassica napus HOM05D004268 ORTHO05D004958 2.5e-29 132.1 105 71.4
Thhalv10011883m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 5.5e-29 131.0 106 72.6
BcaC09g49044 Brassica carinata HOM05D004268 ORTHO05D004958 7.1e-29 130.6 105 71.4
CARHR041550 Cardamine hirsuta HOM05D004268 ORTHO05D004958 2.7e-28 128.6 106 70.8
AL1G59250 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 4.6e-28 127.9 106 71.7
Aa31LG10G3570 Aethionema arabicum HOM05D004268 ORTHO05D004958 1.8e-27 125.9 112 67.0
AT1G51400 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 3.9e-27 124.8 106 70.8
Sp1g38070 Schrenkiella parvula HOM05D004268 ORTHO05D004958 8.7e-27 123.6 106 68.9
BraA01t03491Z Brassica rapa HOM05D004268 ORTHO05D004958 4.3e-26 121.3 107 67.3
BolC1t04268H Brassica oleracea HOM05D004268 ORTHO05D004958 7.4e-26 120.6 107 66.4
A01p33800 Brassica napus HOM05D004268 ORTHO05D004958 2.1e-25 119.0 107 66.4
Aa31LG8G7770 Aethionema arabicum HOM05D004268 ORTHO05D004958 2.8e-25 118.6 112 65.2
Sp3g19010 Schrenkiella parvula HOM05D004268 ORTHO05D004958 1.4e-24 116.3 107 65.4
BcaB04g20616 Brassica carinata HOM05D004268 ORTHO05D004958 1.9e-21 105.9 107 59.8
Cpa.g.sc84.45 Carica papaya HOM05D004268 ORTHO05D004958 2.7e-20 102.1 107 59.8
A03p42000 Brassica napus HOM05D004268 ORTHO05D004958 3.5e-20 101.7 107 59.8
Lsat_1_v5_gn_6_25460 Lactuca sativa HOM05D004268 ORTHO05D004958 2.3e-19 99.0 111 56.8
BcaB04g19135 Brassica carinata HOM05D004268 ORTHO05D004958 8.7e-19 97.1 107 57.9
THA.LOC104817911 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 8.7e-19 97.1 107 59.8
Gohir.A09G113900 Gossypium hirsutum HOM05D004268 ORTHO05D004958 3.3e-18 95.1 108 53.7
Gohir.D09G110500 Gossypium hirsutum HOM05D004268 ORTHO05D004958 3.3e-18 95.1 108 53.7
THA.LOC104816876 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 3.3e-18 95.1 113 54.9
FAN25G2913 Fragaria x ananassa HOM05D004268 ORTHO05D004958 2.2e-17 92.4 106 55.7
HanXRQChr02g0052031 Helianthus annuus HOM05D004268 ORTHO05D004958 2.2e-17 92.4 109 53.2
AUR62000132 Chenopodium quinoa HOM05D004268 ORTHO05D004958 3.7e-17 91.7 101 53.5
CiPaw.14G118100 Carya illinoinensis HOM05D004268 ORTHO05D004958 4.8e-17 91.3 109 58.7
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 4.8e-17 91.3 108 58.3
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 4.8e-17 91.3 108 58.3
RcHm_v2.0_Chr5g0052351 Rosa chinensis HOM05D004268 ORTHO05D004958 6.3e-17 90.9 106 54.7
AUR62019312 Chenopodium quinoa HOM05D004268 ORTHO05D004958 8.2e-17 90.5 101 52.5
Psat5g208760 Pisum sativum HOM05D004268 ORTHO05D004958 1.1e-16 90.1 106 55.7
Duzib150G0004 Durio zibethinus HOM05D004268 ORTHO05D004958 5.3e-16 87.8 108 52.8
Medtr3g030860 Medicago truncatula HOM05D004268 ORTHO05D004958 5.3e-16 87.8 108 55.6
Ciclev10017247m.g Citrus clementina HOM05D004268 ORTHO05D004958 9.0e-16 87.0 110 51.8
Cc06_g23280 Coffea canephora HOM05D004268 ORTHO05D004958 9.0e-16 87.0 106 51.9
Peaxi162Scf00004g00263 Petunia axillaris HOM05D004268 ORTHO05D004958 1.2e-15 86.7 108 51.9
Sed0025860 Sechium edule HOM05D004268 ORTHO05D004958 1.2e-15 86.7 111 52.3
Manes.06G163500 Manihot esculenta HOM05D004268 ORTHO05D004958 1.5e-15 86.3 107 54.2
SGA_v2.0_scaffold3G01494 Striga asiatica HOM05D004268 ORTHO05D004958 1.5e-15 86.3 105 55.2
Sed0017781 Sechium edule HOM05D004268 ORTHO05D004958 2.0e-15 85.9 106 51.9
EL10Ac4g10238 Beta vulgaris HOM05D004268 ORTHO05D004958 2.6e-15 85.5 101 51.5
DCAR_029953 Daucus carota HOM05D004268 ORTHO05D004958 2.6e-15 85.5 106 50.9
Potri.001G256900 Populus trichocarpa HOM05D004268 ORTHO05D004958 3.4e-15 85.1 105 52.4
Medtr3g030850 Medicago truncatula HOM05D004268 ORTHO05D004958 4.5e-15 84.7 106 55.7
MELO3C014587.2 Cucumis melo HOM05D004268 ORTHO05D004958 7.7e-15 84.0 107 54.2
Medtr4g037505 Medicago truncatula HOM05D004268 ORTHO05D004958 7.7e-15 84.0 110 50.9
Haze_23147 Corylus avellana HOM05D004268 ORTHO05D004958 1.3e-14 83.2 109 56.0
Sc09g0000770 Simmondsia chinensis HOM05D004268 ORTHO05D004958 1.3e-14 83.2 107 53.3
TPR.G35302 Trifolium pratense HOM05D004268 ORTHO05D004958 1.3e-14 83.2 106 54.7
Atru.chr3.2699 Acer truncatum HOM05D004268 ORTHO05D004958 1.7e-14 82.8 109 48.6
TPR.G35305 Trifolium pratense HOM05D004268 ORTHO05D004958 2.9e-14 82.0 108 51.9
Psat7g196400 Pisum sativum HOM05D004268 ORTHO05D004958 5.0e-14 81.3 108 50.0
TWI34G1192 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 5.0e-14 81.3 108 50.9
Nn2g15305 Nelumbo nucifera HOM05D004268 ORTHO05D004958 6.5e-14 80.9 105 51.4
Cfa009783 Carpinus fangiana HOM05D004268 ORTHO05D004958 1.1e-13 80.1 108 55.6
Hma1.2p1_0368F.1_g137310 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 1.1e-13 80.1 116 49.1
Actinidia23976 Actinidia chinensis HOM05D004268 ORTHO05D004958 1.4e-13 79.7 111 50.5
CiPaw.13G159300 Carya illinoinensis HOM05D004268 ORTHO05D004958 1.4e-13 79.7 110 53.6
Lj3g0003624 Lotus japonicus HOM05D004268 ORTHO05D004958 1.4e-13 79.7 104 49.0
Rhsim01G0192200 Rhododendron simsii HOM05D004268 ORTHO05D004958 1.4e-13 79.7 106 53.8
Ah.06g194080 Amaranthus hybridus HOM05D004268 ORTHO05D004958 1.9e-13 79.3 101 45.5
Peaxi162Scf00032g00063 Petunia axillaris HOM05D004268 ORTHO05D004958 1.9e-13 79.3 108 50.9
ClCG02G023150 Citrullus lanatus HOM05D004268 ORTHO05D004958 4.2e-13 78.2 107 46.7
Oeu063326.1 Olea europaea HOM05D004268 ORTHO05D004958 4.2e-13 78.2 106 49.1
CDE05G0821 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 7.2e-13 77.4 87 55.2
CDE05G3212 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 7.2e-13 77.4 105 49.5
QL01p004584 Quercus lobata HOM05D004268 ORTHO05D004958 7.2e-13 77.4 109 47.7
Glyma.15G275600 Glycine max HOM05D004268 ORTHO05D004958 9.4e-13 77.0 105 49.5
EL10Ac2g04340 Beta vulgaris HOM05D004268 ORTHO05D004958 1.2e-12 76.6 103 48.5
BraA06t23458Z Brassica rapa HOM05D004268 ORTHO05D004958 1.2e-12 76.6 103 51.5
Cpa.g.sc125.13 Carica papaya HOM05D004268 ORTHO05D004958 1.2e-12 76.6 108 49.1
DCAR_031628 Daucus carota HOM05D004268 ORTHO05D004958 1.2e-12 76.6 107 46.7
Duzib168G1465 Durio zibethinus HOM05D004268 ORTHO05D004958 1.2e-12 76.6 108 48.1
unitig_8.g2993 Utricularia gibba HOM05D004268 ORTHO05D004958 1.2e-12 76.6 104 49.0
COL.COLO4_06120 Corchorus olitorius HOM05D004268 ORTHO05D004958 1.6e-12 76.3 107 47.7
Glyma.10G089300 Glycine max HOM05D004268 ORTHO05D004958 1.6e-12 76.3 104 50.0
TAR633G1399 Trochodendron aralioides HOM05D004268 ORTHO05D004958 1.6e-12 76.3 109 45.0
DCAR_002077 Daucus carota HOM05D004268 ORTHO05D004958 2.1e-12 75.9 109 46.8
Ciclev10033132m.g Citrus clementina HOM05D004268 ORTHO05D004958 2.7e-12 75.5 109 49.5
QL04p008292 Quercus lobata HOM05D004268 ORTHO05D004958 3.6e-12 75.1 109 46.8
Glyma.10G089500 Glycine max HOM05D004268 ORTHO05D004958 4.6e-12 74.7 104 51.0
Gohir.D08G164800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 4.6e-12 74.7 107 47.7
TPR.G3668 Trifolium pratense HOM05D004268 ORTHO05D004958 4.6e-12 74.7 109 46.8
Atru.chr11.2609 Acer truncatum HOM05D004268 ORTHO05D004958 7.9e-12 73.9 110 50.0
Duzib138G1697 Durio zibethinus HOM05D004268 ORTHO05D004958 7.9e-12 73.9 106 50.0
Gohir.A08G143800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 7.9e-12 73.9 107 47.7
Gorai.004G171800 Gossypium raimondii HOM05D004268 ORTHO05D004958 7.9e-12 73.9 107 47.7
PGR102G2953 Punica granatum HOM05D004268 ORTHO05D004958 7.9e-12 73.9 109 46.8
Glyma.15G275700 Glycine max HOM05D004268 ORTHO05D004958 1.0e-11 73.6 106 50.0
ECA233G4176 Erigeron canadensis HOM05D004268 ORTHO05D004958 1.8e-11 72.8 109 45.9
Lj3g0019333 Lotus japonicus HOM05D004268 ORTHO05D004958 2.3e-11 72.4 105 45.7
FvH4_3g28710 Fragaria vesca HOM05D004268 ORTHO05D004958 3.0e-11 72.0 106 48.1
FAN11G3362 Fragaria x ananassa HOM05D004268 ORTHO05D004958 3.0e-11 72.0 106 48.1
Potri.009G052500 Populus trichocarpa HOM05D004268 ORTHO05D004958 6.7e-11 70.9 105 46.7
FAN16G2720 Fragaria x ananassa HOM05D004268 ORTHO05D004958 8.8e-11 70.5 106 47.2
FAN21G1561 Fragaria x ananassa HOM05D004268 ORTHO05D004958 8.8e-11 70.5 106 47.2
Ah.10g038780 Amaranthus hybridus HOM05D000040 ORTHO05D000267 1.1e-10 70.1 102 46.1
Nitab4.5_0002741g0110 Nicotiana tabacum HOM05D004268 ORTHO05D004958 2.0e-10 69.3 41 80.5
TWI32G0064 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 2.0e-10 69.3 108 48.1
Thecc.01G409600 Theobroma cacao HOM05D004268 ORTHO05D004958 2.5e-10 68.9 106 46.2
VMungo1127G0621 Vigna mungo HOM05D004268 ORTHO05D004958 2.5e-10 68.9 106 46.2
A03p43270 Brassica napus HOM05D046874 ORTHO05D042050 3.3e-10 68.6 63 60.3
CSS0050517 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 3.3e-10 68.6 112 47.3
MBI02_g05661_MAGBIO Magnolia biondii HOM05D004268 ORTHO05D004958 3.3e-10 68.6 115 47.8
Phvul.011G009700 Phaseolus vulgaris HOM05D004268 ORTHO05D004958 4.3e-10 68.2 106 44.3
HanXRQChr13g0401101 Helianthus annuus HOM05D004268 ORTHO05D004958 9.7e-10 67.0 109 44.0
Nitab4.5_0004741g0020 Nicotiana tabacum HOM05D004268 ORTHO05D004958 9.7e-10 67.0 89 50.6
PGR119G0693 Punica granatum HOM05D004268 ORTHO05D004958 1.3e-09 66.6 106 44.3
PSO541G0301 Papaver somniferum HOM05D004268 ORTHO05D004958 2.2e-09 65.9 112 42.0
MBI04_g40114_MAGBIO Magnolia biondii HOM05D000074 ORTHO05D000220 2.8e-09 65.5 108 46.3
Dinv22170 Davidia involucrata HOM05D004268 ORTHO05D004958 3.7e-09 65.1 95 51.6
Manes.14G003500 Manihot esculenta HOM05D004268 ORTHO05D004958 2.4e-08 62.4 108 46.3
CANSAT54G2544 Cannabis sativa HOM05D004268 ORTHO05D004958 4.1e-08 61.6 113 43.4
Duzib133G0767 Durio zibethinus HOM05D004268 ORTHO05D004958 4.1e-08 61.6 107 45.8
Thecc.09G235200 Theobroma cacao HOM05D004268 ORTHO05D004958 4.1e-08 61.6 106 39.6
ATR0763G199 Amborella trichopoda HOM05D004268 ORTHO05D004958 5.3e-08 61.2 106 40.6
Migut.D00609 Erythranthe guttata HOM05D004268 ORTHO05D004958 9.1e-08 60.5 41 75.6
Peaxi162Scf00032g00064 Petunia axillaris HOM05D004268 ORTHO05D004958 9.1e-08 60.5 107 46.7
MD11G1191900 Malus domestica HOM05D004268 ORTHO05D004958 1.2e-07 60.1 108 42.6
Prupe.4G250700 Prunus persica HOM05D004268 ORTHO05D004958 1.5e-07 59.7 108 43.5
PGSC0003DMG400004639 Solanum tuberosum HOM05D004268 ORTHO05D004958 2.0e-07 59.3 110 40.9
Dinv09347 Davidia involucrata HOM05D004268 ORTHO05D004958 2.6e-07 58.9 96 47.9
Eucgr.B03692 Eucalyptus grandis HOM05D004268 ORTHO05D004958 7.7e-07 57.4 107 39.3
MD03G1173700 Malus domestica HOM05D004268 ORTHO05D004958 7.7e-07 57.4 108 41.7
SEGI_11181 Sequoiadendron giganteum HOM05D004268 ORTHO05D004958 7.7e-07 57.4 118 39.8
BcaB07g33586 Brassica carinata HOM05D004268 ORTHO05D004958 1.7e-06 56.2 105 41.0
CAN.G821.8 Capsicum annuum HOM05D004268 ORTHO05D004958 1.7e-06 56.2 83 44.6
Solyc01g008510.3 Solanum lycopersicum HOM05D004268 ORTHO05D004958 2.9e-06 55.5 79 48.1
Sopen01g004050 Solanum pennellii HOM05D004268 ORTHO05D004958 2.9e-06 55.5 79 46.8
Migut.N02326 Erythranthe guttata HOM05D004268 ORTHO05D004958 3.8e-06 55.1 38 71.1
Nitab4.5_0002741g0120 Nicotiana tabacum HOM05D004268 ORTHO05D004958 6.5e-06 54.3 107 41.1


User provided reference genes

Program Settings