Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G20920 Arabidopsis thaliana HOM05D004378 ORTHO05D005269 3.1e-180 635.2 365 100.0
Carub.0003s2090 Capsella rubella HOM05D004378 ORTHO05D005269 2.1e-168 595.9 364 92.6
CARHR096800 Cardamine hirsuta HOM05D004378 ORTHO05D005269 5.4e-164 581.3 366 85.5
Sp3g18950 Schrenkiella parvula HOM05D004378 ORTHO05D005269 2.3e-162 575.9 366 89.6
Thhalv10021027m.g Eutrema salsugineum HOM05D004378 ORTHO05D005269 6.6e-162 574.3 365 89.3
BcaB04g20618 Brassica carinata HOM05D004378 ORTHO05D005269 1.9e-161 572.8 366 88.8
BraA01t03495Z Brassica rapa HOM05D004378 ORTHO05D005269 1.4e-159 566.6 366 87.4
A01p33870 Brassica napus HOM05D004378 ORTHO05D005269 1.8e-159 566.2 366 87.7
A05p27790 Brassica napus HOM05D004378 ORTHO05D005269 2.4e-156 555.8 366 86.6
BcaB06g26169 Brassica carinata HOM05D004378 ORTHO05D005269 3.2e-156 555.4 364 87.1
BraA05t21666Z Brassica rapa HOM05D004378 ORTHO05D005269 4.1e-156 555.1 366 86.3
C05p43130 Brassica napus HOM05D004378 ORTHO05D005269 4.5e-155 551.6 366 85.8
BolC5t33043H Brassica oleracea HOM05D004378 ORTHO05D005269 4.5e-155 551.6 366 85.8
Aa31LG8G7740 Aethionema arabicum HOM05D004378 ORTHO05D005269 5.6e-153 544.7 367 85.0
BcaC01g03532 Brassica carinata HOM05D004378 ORTHO05D005269 2.9e-149 532.3 366 84.2
C03p51390 Brassica napus HOM05D004378 ORTHO05D005269 2.9e-149 532.3 366 84.2
BolC3t17425H Brassica oleracea HOM05D004378 ORTHO05D005269 1.9e-148 529.6 369 84.6
BraA03t13351Z Brassica rapa HOM05D004378 ORTHO05D005269 7.8e-147 524.2 366 83.3
A03p41980 Brassica napus HOM05D004378 ORTHO05D005269 1.3e-146 523.5 365 83.0
AL3G34880 Arabidopsis lyrata HOM05D004378 ORTHO05D005269 1.4e-140 503.4 305 97.4
BcaB06g26167 Brassica carinata HOM05D004378 ORTHO05D005269 2.4e-140 502.7 333 86.8
THA.LOC104816878 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 1.3e-138 496.9 335 83.9
BcaC05g28205 Brassica carinata HOM05D004378 ORTHO05D005269 1.2e-136 490.3 366 80.1
Aa31LG10G3540 Aethionema arabicum HOM05D004378 ORTHO05D005269 1.6e-131 473.4 312 80.1
Ciclev10015746m.g Citrus clementina HOM05D004378 ORTHO05D005269 3.4e-126 455.7 341 71.8
Manes.06G163800 Manihot esculenta HOM05D004378 ORTHO05D005269 4.4e-126 455.3 338 70.1
Prupe.4G250000 Prunus persica HOM05D004378 ORTHO05D005269 8.4e-125 451.1 332 69.6
GSVIVG01025251001 Vitis vinifera HOM05D004378 ORTHO05D005269 1.1e-124 450.7 343 68.2
CSS0043718 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 2.4e-124 449.5 344 69.5
Duzib150G1120 Durio zibethinus HOM05D004378 ORTHO05D005269 5.4e-124 448.4 332 69.0
Duzib168G0314 Durio zibethinus HOM05D004378 ORTHO05D005269 9.3e-124 447.6 347 67.4
Nn2g15350 Nelumbo nucifera HOM05D004378 ORTHO05D005269 9.3e-124 447.6 331 70.4
CiPaw.14G118500 Carya illinoinensis HOM05D004378 ORTHO05D005269 2.7e-123 446.0 339 69.3
Gohir.A08G013900 Gossypium hirsutum HOM05D004378 ORTHO05D005269 6.0e-123 444.9 344 67.4
Gorai.004G019800 Gossypium raimondii HOM05D004378 ORTHO05D005269 6.0e-123 444.9 344 67.4
Gohir.D08G024400 Gossypium hirsutum HOM05D004378 ORTHO05D005269 1.7e-122 443.4 344 67.2
MD11G1192300 Malus domestica HOM05D004378 ORTHO05D005269 6.6e-122 441.4 332 70.2
QL01p004640 Quercus lobata HOM05D004378 ORTHO05D005269 1.1e-121 440.7 327 73.4
THA.LOC104799106 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 4.3e-121 438.7 347 71.5
Thecc.09G234500 Theobroma cacao HOM05D004378 ORTHO05D005269 4.3e-121 438.7 341 67.2
arahy.Tifrunner.gnm1.ann1.B78H3K Arachis hypogaea HOM05D004378 ORTHO05D005269 5.6e-121 438.3 335 69.3
Glyma.08G336000 Glycine max HOM05D004378 ORTHO05D005269 5.6e-121 438.3 341 66.9
arahy.Tifrunner.gnm1.ann1.YL0VRD Arachis hypogaea HOM05D004378 ORTHO05D005269 7.3e-121 438.0 335 69.3
TWI60G1037 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 7.3e-121 438.0 351 68.1
Atru.chr3.2709 Acer truncatum HOM05D004378 ORTHO05D005269 2.1e-120 436.4 364 65.4
CiPaw.13G159900 Carya illinoinensis HOM05D004378 ORTHO05D005269 2.1e-120 436.4 336 69.3
RcHm_v2.0_Chr5g0052271 Rosa chinensis HOM05D004378 ORTHO05D005269 2.8e-120 436.0 330 67.3
COL.COLO4_07579 Corchorus olitorius HOM05D004378 ORTHO05D005269 3.6e-120 435.6 292 74.3
Lj6g0003660 Lotus japonicus HOM05D004378 ORTHO05D005269 3.6e-120 435.6 339 68.7
Nitab4.5_0000023g0700 Nicotiana tabacum HOM05D004378 ORTHO05D005269 6.2e-120 434.9 333 67.0
FvH4_3g28770 Fragaria vesca HOM05D004378 ORTHO05D005269 1.1e-119 434.1 331 66.8
Phvul.006G062100 Phaseolus vulgaris HOM05D004378 ORTHO05D005269 1.1e-119 434.1 339 66.1
THA.LOC104824616 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 1.4e-119 433.7 339 74.9
Hma1.2p1_0368F.1_g137300 Hydrangea macrophylla HOM05D004378 ORTHO05D005269 1.8e-119 433.3 325 69.2
Medtr3g061490 Medicago truncatula HOM05D004378 ORTHO05D005269 1.8e-119 433.3 340 67.1
ClCG03G013210 Citrullus lanatus HOM05D004378 ORTHO05D005269 2.4e-119 433.0 348 68.7
MELO3C015197.2 Cucumis melo HOM05D004378 ORTHO05D005269 2.4e-119 433.0 348 69.3
Glyma.18G071100 Glycine max HOM05D004378 ORTHO05D005269 3.1e-119 432.6 341 66.9
VMungo0540G0714 Vigna mungo HOM05D004378 ORTHO05D005269 3.1e-119 432.6 339 66.7
TPR.G14725 Trifolium pratense HOM05D004378 ORTHO05D005269 4.0e-119 432.2 341 67.2
CsaV3_1G042790 Cucumis sativus L. HOM05D004378 ORTHO05D005269 5.3e-119 431.8 348 69.0
Ca_14874_v3 Cicer arietinum L. HOM05D004378 ORTHO05D005269 6.9e-119 431.4 341 67.7
Haze_23143 Corylus avellana HOM05D004378 ORTHO05D005269 6.9e-119 431.4 330 68.5
Nn7g36225 Nelumbo nucifera HOM05D004378 ORTHO05D005269 9.0e-119 431.0 330 66.4
FAN25G2048 Fragaria x ananassa HOM05D004378 ORTHO05D005269 1.2e-118 430.6 351 63.5
Actinidia06909 Actinidia chinensis HOM05D004378 ORTHO05D005269 2.0e-118 429.9 341 65.1
Cfa009777 Carpinus fangiana HOM05D004378 ORTHO05D005269 2.6e-118 429.5 298 71.8
FAN11G1994 Fragaria x ananassa HOM05D004378 ORTHO05D005269 2.6e-118 429.5 351 63.5
CANSAT54G1532 Cannabis sativa HOM05D004378 ORTHO05D005269 3.4e-118 429.1 339 67.0
Lalb_Chr15g0082531 Lupinus albus HOM05D004378 ORTHO05D005269 3.4e-118 429.1 336 67.6
Lalb_Chr18g0050451 Lupinus albus HOM05D004378 ORTHO05D005269 4.4e-118 428.7 317 71.9
Sed0026402 Sechium edule HOM05D004378 ORTHO05D005269 7.6e-118 427.9 337 66.2
FAN16G3181 Fragaria x ananassa HOM05D004378 ORTHO05D005269 1.7e-117 426.8 351 63.5
Potri.009G052800 Populus trichocarpa HOM05D004378 ORTHO05D005269 1.7e-117 426.8 362 63.5
DCAR_030049 Daucus carota HOM05D004378 ORTHO05D005269 2.2e-117 426.4 336 64.3
Eucgr.J00761 Eucalyptus grandis HOM05D004378 ORTHO05D005269 2.2e-117 426.4 343 66.8
TAR369G0513 Trochodendron aralioides HOM05D004378 ORTHO05D005269 2.2e-117 426.4 334 66.8
TWI34G1172 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 2.9e-117 426.0 332 69.0
Actinidia16337 Actinidia chinensis HOM05D004378 ORTHO05D005269 3.8e-117 425.6 363 62.3
AUR62000126 Chenopodium quinoa HOM05D004378 ORTHO05D005269 4.9e-117 425.2 327 69.4
Cc01_g04470 Coffea canephora HOM05D004378 ORTHO05D005269 4.9e-117 425.2 329 67.2
HanXRQChr13g0401501 Helianthus annuus HOM05D004378 ORTHO05D005269 8.4e-117 424.5 339 65.5
CAN.G1204.2 Capsicum annuum HOM05D004378 ORTHO05D005269 4.2e-116 422.2 341 66.0
Dinv22174 Davidia involucrata HOM05D004378 ORTHO05D005269 5.4e-116 421.8 303 69.6
Nitab4.5_0002786g0020 Nicotiana tabacum HOM05D004378 ORTHO05D005269 5.4e-116 421.8 352 64.2
Migut.D00605 Erythranthe guttata HOM05D004378 ORTHO05D005269 9.3e-116 421.0 318 66.7
Rhsim13G0220800 Rhododendron simsii HOM05D004378 ORTHO05D005269 9.3e-116 421.0 306 70.9
MSTRG.18430 Avicennia marina HOM05D004378 ORTHO05D005269 1.6e-115 420.2 330 65.2
MBI04_g36075_MAGBIO Magnolia biondii HOM05D004378 ORTHO05D005269 2.1e-115 419.9 341 64.8
Potri.001G257500 Populus trichocarpa HOM05D004378 ORTHO05D005269 3.5e-115 419.1 337 65.6
CDE05G0884 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 4.6e-115 418.7 326 68.4
Ah.06g194140 Amaranthus hybridus HOM05D004378 ORTHO05D005269 6.0e-115 418.3 327 69.4
CDE05G0340 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 6.0e-115 418.3 326 67.8
Migut.N02321 Erythranthe guttata HOM05D004378 ORTHO05D005269 1.0e-114 417.5 355 61.4
EL10Ac4g10244 Beta vulgaris HOM05D004378 ORTHO05D005269 1.3e-114 417.2 328 66.8
Sopen01g003990 Solanum pennellii HOM05D004378 ORTHO05D005269 1.3e-114 417.2 326 67.5
ECA233G1578 Erigeron canadensis HOM05D004378 ORTHO05D005269 1.7e-114 416.8 337 64.1
Oeu001481.2 Olea europaea HOM05D004378 ORTHO05D005269 3.0e-114 416.0 301 68.8
Oeu016680.1 Olea europaea HOM05D004378 ORTHO05D005269 3.9e-114 415.6 302 70.2
Solyc01g008470.3 Solanum lycopersicum HOM05D004378 ORTHO05D005269 3.9e-114 415.6 326 67.5
PGSC0003DMG400007339 Solanum tuberosum HOM05D004378 ORTHO05D005269 5.1e-114 415.2 331 64.4
Lsat_1_v5_gn_6_26200 Lactuca sativa HOM05D004378 ORTHO05D005269 6.6e-114 414.8 335 67.2
SGA_v2.0_scaffold247G44883 Striga asiatica HOM05D004378 ORTHO05D005269 6.6e-114 414.8 312 66.0
Lj2A629T47 Lonicera japonica HOM05D004378 ORTHO05D005269 8.7e-114 414.5 295 78.6
PGSC0003DMG400010703 Solanum tuberosum HOM05D004378 ORTHO05D005269 8.7e-114 414.5 326 66.9
Sabra16G0157500 Salix brachista HOM05D004378 ORTHO05D005269 2.5e-113 412.9 337 65.3
Aqoxy1G00284 Aquilegia oxysepala HOM05D004378 ORTHO05D005269 3.3e-113 412.5 329 65.0
PSO384G0525 Papaver somniferum HOM05D004378 ORTHO05D005269 4.3e-113 412.1 333 63.1
HanXRQChr02g0051301 Helianthus annuus HOM05D004378 ORTHO05D005269 9.6e-113 411.0 322 65.2
PSO339G6315 Papaver somniferum HOM05D004378 ORTHO05D005269 1.3e-112 410.6 333 63.1
Peaxi162Scf00004g02527 Petunia axillaris HOM05D004378 ORTHO05D005269 2.1e-112 409.8 327 65.7
PGR119G1351 Punica granatum HOM05D004378 ORTHO05D005269 8.1e-112 407.9 299 75.3
Peaxi162Scf00032g00327 Petunia axillaris HOM05D004378 ORTHO05D005269 1.1e-111 407.5 341 62.2
Psat5g163880 Pisum sativum HOM05D004378 ORTHO05D005269 6.9e-111 404.8 341 63.6
Sopen11g025430 Solanum pennellii HOM05D004378 ORTHO05D005269 3.4e-110 402.5 331 62.8
SGA_v2.0_scaffold8G04586 Striga asiatica HOM05D004378 ORTHO05D005269 6.4e-109 398.3 323 62.5
unitig_699.g19136 Utricularia gibba HOM05D004378 ORTHO05D005269 6.4e-109 398.3 330 62.4
CSS0001002 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 3.2e-108 396.0 333 64.0
unitig_27.g24995 Utricularia gibba HOM05D004378 ORTHO05D005269 9.3e-108 394.4 332 61.4
ATR0332G071 Amborella trichopoda HOM05D004378 ORTHO05D005269 1.9e-105 386.7 342 60.2
Lsat_1_v5_gn_2_31060 Lactuca sativa HOM05D004378 ORTHO05D005269 3.3e-105 386.0 303 63.4
Dinv36255 Davidia involucrata HOM05D004378 ORTHO05D005269 4.3e-105 385.6 291 68.4
Nitab4.5_0001587g0030 Nicotiana tabacum HOM05D004378 ORTHO05D005269 4.3e-105 385.6 323 62.2
Sabra09G0038500 Salix brachista HOM05D004378 ORTHO05D005269 2.1e-104 383.3 459 50.3
Os02g0435000 Oryza sativa ssp. japonica HOM05D004378 ORTHO05D005269 6.2e-104 381.7 320 58.4
Nitab4.5_0002741g0140 Nicotiana tabacum HOM05D004378 ORTHO05D005269 3.1e-103 379.4 299 64.9
Hund22027 Selenicereus undatus HOM05D004378 ORTHO05D005269 2.6e-102 376.3 337 58.5
Zm00001eb064100 Zea mays HOM05D004378 ORTHO05D005269 4.5e-102 375.6 329 57.8
Manes.14G003200 Manihot esculenta HOM05D004378 ORTHO05D005269 5.8e-102 375.2 327 62.7
BolC1t04284H Brassica oleracea HOM05D004378 ORTHO05D005269 2.2e-101 373.2 265 80.8
Zm00001eb210940 Zea mays HOM05D004378 ORTHO05D005269 2.2e-101 373.2 320 58.4
Sed0000917 Sechium edule HOM05D004378 ORTHO05D005269 3.9e-98 362.5 346 59.2
SEGI_31334 Sequoiadendron giganteum HOM05D004378 ORTHO05D005269 5.3e-95 352.1 319 58.0
HPP92_024875 Vanilla planifolia HOM05D004378 ORTHO05D005269 9.0e-95 351.3 325 54.5
Actinidia06345 Actinidia chinensis HOM05D004378 ORTHO05D005269 4.2e-92 342.4 284 65.1
SMO117G0234 Selaginella moellendorffii HOM05D004378 ORTHO05D005269 7.7e-86 321.6 309 52.8
vmacro04153 Vaccinium macrocarpon HOM05D004378 ORTHO05D005269 1.6e-83 313.9 448 45.8
SHI29790 Sapria himalayana HOM05D004378 ORTHO05D005269 1.8e-79 300.4 295 59.3
Mapoly0080s0045 Marchantia polymorpha HOM05D004378 ORTHO05D005269 6.9e-79 298.5 332 50.0
AagrBONN_evm.TU.Sc2ySwM_228.3794 Anthoceros agrestis HOM05D004378 ORTHO05D005269 6.1e-75 285.4 317 48.9
Lj1A330G22 Lonicera japonica HOM05D004378 ORTHO05D005269 8.8e-74 281.6 281 56.2
Pp3c27_5530 Physcomitrium patens HOM05D004378 ORTHO05D005269 5.7e-73 278.9 314 48.7
Pp3c16_12820 Physcomitrium patens HOM05D004378 ORTHO05D005269 1.7e-72 277.3 295 49.2
Sc09g0000750 Simmondsia chinensis HOM05D004378 ORTHO05D005269 1.8e-71 273.9 208 67.3
Cpa.g.sc84.48 Carica papaya HOM05D004378 ORTHO05D005269 2.4e-71 273.5 198 70.2
CAN.G494.6 Capsicum annuum HOM05D004378 ORTHO05D005269 6.1e-67 258.8 201 66.2
MSTRG.21374 Avicennia marina HOM05D004378 ORTHO05D005269 6.7e-66 255.4 193 65.8
MD03G1174500 Malus domestica HOM05D004378 ORTHO05D005269 2.0e-65 253.8 196 67.9
Lalb_Chr20g0115221 Lupinus albus HOM05D004378 ORTHO05D005269 1.7e-64 250.8 192 65.6
FAN21G1987 Fragaria x ananassa HOM05D004378 ORTHO05D005269 1.8e-63 247.3 199 62.3
Peaxi162Scf00004g02528 Petunia axillaris HOM05D004378 ORTHO05D005269 2.5e-60 236.9 240 54.2
CBR_g54322 Chara braunii HOM05D004378 ORTHO05D005269 5.4e-55 219.2 307 41.0
MSTRG.21373 Avicennia marina HOM05D004378 ORTHO05D005269 2.3e-42 177.2 141 64.5
TAR057G0002 Trochodendron aralioides HOM05D004378 ORTHO05D005269 1.5e-41 174.5 132 66.7
Lalb_Chr20g0115231 Lupinus albus HOM05D004378 ORTHO05D005269 1.7e-37 161.0 139 61.2
AUR62019307 Chenopodium quinoa HOM05D004378 ORTHO05D005269 2.0e-33 147.5 124 64.5
TAR623G1006 Trochodendron aralioides HOM05D004378 ORTHO05D005269 1.7e-32 144.4 128 57.8
Cre02.g084050 Chlamydomonas reinhardtii HOM05D004378 ORTHO05D005269 7.8e-22 109.0 212 31.1
SHI32640 Sapria himalayana HOM05D004378 ORTHO05D000001 2.3e-21 107.5 101 57.4
Sopen01g004010 Solanum pennellii HOM05D004378 ORTHO05D005269 3.3e-20 103.6 108 55.6
MCO14G148 Micromonas commoda HOM05D004378 ORTHO05D005269 2.0e-17 94.4 247 27.5
Solyc03g096225.1 Solanum lycopersicum HOM05D004378 ORTHO05D005269 3.1e-10 70.5 92 40.2
BcaB01g01266 Brassica carinata HOM05D000313 ORTHO05D000065 3.4e-09 67.0 38 94.7


User provided reference genes

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