Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G20490 Arabidopsis thaliana HOM05D006489 ORTHO05D007556 4.1e-254 880.9 459 100.0
AL3G34270 Arabidopsis lyrata HOM05D006489 ORTHO05D007556 2.8e-226 788.5 459 91.1
Carub.0003s2045 Capsella rubella HOM05D006489 ORTHO05D007556 1.3e-202 709.9 447 85.5
CARHR096250 Cardamine hirsuta HOM05D006489 ORTHO05D007556 1.6e-189 666.4 470 79.4
Aa31LG8G7280 Aethionema arabicum HOM05D006489 ORTHO05D007556 1.3e-170 603.6 465 71.4
BcaB06g27045 Brassica carinata HOM05D006489 ORTHO05D007556 7.0e-137 491.5 520 61.5
BraA04t16706Z Brassica rapa HOM05D006489 ORTHO05D007556 3.0e-135 486.1 473 65.8
THA.LOC104817868 Tarenaya hassleriana HOM05D006489 ORTHO05D007556 1.2e-128 464.2 446 59.2
BcaC02g09533 Brassica carinata HOM05D006489 ORTHO05D007556 4.3e-126 455.7 584 54.8
BolC4t25966H Brassica oleracea HOM05D006489 ORTHO05D007556 4.3e-126 455.7 584 54.8
C04p43850 Brassica napus HOM05D006489 ORTHO05D007556 9.5e-126 454.5 584 54.8
A04p10340 Brassica napus HOM05D006489 ORTHO05D007556 3.6e-125 452.6 586 54.6
Sp7g05570 Schrenkiella parvula HOM05D006489 ORTHO05D007556 9.9e-115 417.9 638 48.9
Thhalv10028177m.g Eutrema salsugineum HOM05D006489 ORTHO05D007556 1.7e-111 407.1 466 58.8
Cpa.g.sc97.9 Carica papaya HOM05D006489 ORTHO05D007556 2.7e-80 303.5 467 43.7
TWI15G0832 Tripterygium wilfordii HOM05D006489 ORTHO05D007556 7.9e-80 302.0 480 44.0
Ciclev10008166m.g Citrus clementina HOM05D006489 ORTHO05D007556 6.3e-77 292.4 490 45.3
Gorai.004G027700 Gossypium raimondii HOM05D006489 ORTHO05D007556 2.4e-76 290.4 473 45.0
Sabra11G0125100 Salix brachista HOM05D006489 ORTHO05D007556 3.1e-76 290.0 486 43.4
Gohir.D08G030200 Gossypium hirsutum HOM05D006489 ORTHO05D007556 6.9e-76 288.9 474 45.1
Duzib213G0414 Durio zibethinus HOM05D006489 ORTHO05D007556 1.5e-75 287.7 474 44.9
QL08p010454 Quercus lobata HOM05D006489 ORTHO05D007556 1.4e-73 281.2 509 40.9
COL.COLO4_19762 Corchorus olitorius HOM05D006489 ORTHO05D007556 1.1e-70 271.6 411 44.8
Potri.011G139200 Populus trichocarpa HOM05D006489 ORTHO05D007556 4.3e-70 269.6 489 41.7
TAR627G0165 Trochodendron aralioides HOM05D006489 ORTHO05D007556 1.7e-69 267.7 486 40.9
Gohir.A08G019600 Gossypium hirsutum HOM05D006489 ORTHO05D007556 3.7e-69 266.5 473 43.8
Dinv22265 Davidia involucrata HOM05D006489 ORTHO05D007556 3.1e-68 263.5 470 41.5
Haze_09673 Corylus avellana HOM05D006489 ORTHO05D007556 1.2e-67 261.5 525 36.6
Actinidia35341 Actinidia chinensis HOM05D006489 ORTHO05D007556 1.7e-66 257.7 482 40.9
vmacro09717 Vaccinium macrocarpon HOM05D006489 ORTHO05D007556 1.4e-65 254.6 479 41.1
Manes.03G129000 Manihot esculenta HOM05D006489 ORTHO05D007556 1.4e-63 248.1 482 38.4
ATR0752G219 Amborella trichopoda HOM05D006489 ORTHO05D007556 1.8e-63 247.7 532 36.8
Cfa020351 Carpinus fangiana HOM05D006489 ORTHO05D007556 3.0e-63 246.9 556 34.9
ECA240G0124 Erigeron canadensis HOM05D006489 ORTHO05D007556 6.7e-63 245.7 493 40.6
Aqoxy1G03602 Aquilegia oxysepala HOM05D006489 ORTHO05D007556 4.8e-61 239.6 489 38.0
Hma1.2p1_1162F.1_g262610 Hydrangea macrophylla HOM05D006489 ORTHO05D007556 6.3e-61 239.2 487 38.8
Peaxi162Scf00964g00023 Petunia axillaris HOM05D006489 ORTHO05D007556 1.1e-60 238.4 478 39.5
Prupe.4G212300 Prunus persica HOM05D006489 ORTHO05D007556 6.9e-60 235.7 519 36.8
Ca_25386_v3 Cicer arietinum L. HOM05D006489 ORTHO05D007556 1.2e-59 235.0 515 36.3
CiPaw.12G129400 Carya illinoinensis HOM05D006489 ORTHO05D007556 1.5e-59 234.6 530 37.0
HanXRQChr03g0076541 Helianthus annuus HOM05D006489 ORTHO05D007556 1.0e-58 231.9 478 38.9
TPR.G1166 Trifolium pratense HOM05D006489 ORTHO05D007556 1.4e-57 228.0 521 37.8
Lsat_1_v5_gn_9_94040 Lactuca sativa HOM05D006489 ORTHO05D007556 3.2e-57 226.9 467 38.8
PGR083G1541 Punica granatum HOM05D006489 ORTHO05D007556 5.5e-57 226.1 463 39.7
Atru.chr2.3342 Acer truncatum HOM05D006489 ORTHO05D007556 7.2e-57 225.7 301 47.2
Glyma.02G290600 Glycine max HOM05D006489 ORTHO05D007556 7.2e-57 225.7 562 35.2
Sopen07g032750 Solanum pennellii HOM05D006489 ORTHO05D007556 3.6e-56 223.4 492 38.6
Ca_06317_v3 Cicer arietinum L. HOM05D006489 ORTHO05D007556 6.1e-56 222.6 523 36.7
PGSC0003DMG400022321 Solanum tuberosum HOM05D006489 ORTHO05D007556 2.3e-55 220.7 493 38.5
CSS0036232 Camellia sinensis var. sinensis HOM05D006489 ORTHO05D007556 3.0e-55 220.3 522 34.9
HanXRQChr08g0220561 Helianthus annuus HOM05D006489 ORTHO05D007556 3.0e-55 220.3 480 38.3
Solyc07g064570.3 Solanum lycopersicum HOM05D006489 ORTHO05D007556 3.9e-55 219.9 490 39.0
MBI02_g07154_MAGBIO Magnolia biondii HOM05D006489 ORTHO05D007556 6.7e-55 219.2 496 35.3
CSS0017234 Camellia sinensis var. sinensis HOM05D006489 ORTHO05D007556 2.6e-54 217.2 522 34.5
CAN.G337.129 Capsicum annuum HOM05D006489 ORTHO05D007556 3.3e-54 216.9 542 36.0
Cc09_g09720 Coffea canephora HOM05D006489 ORTHO05D007556 4.4e-54 216.5 483 35.8
Hund23251 Selenicereus undatus HOM05D006489 ORTHO05D007556 4.4e-54 216.5 433 40.0
LjContig00272g0011286 Lotus japonicus HOM05D006489 ORTHO05D007556 1.4e-52 211.5 519 35.3
GSVIVG01037644001 Vitis vinifera HOM05D006489 ORTHO05D007556 2.4e-52 210.7 475 37.1
RhsimUnG0250900 Rhododendron simsii HOM05D006489 ORTHO05D007556 3.1e-52 210.3 366 41.8
Sc03g0008610 Simmondsia chinensis HOM05D006489 ORTHO05D007556 9.1e-52 208.8 361 41.0
arahy.Tifrunner.gnm1.ann1.I0Q6ZZ Arachis hypogaea HOM05D006489 ORTHO05D007556 1.6e-51 208.0 560 33.6
AUR62015766 Chenopodium quinoa HOM05D006489 ORTHO05D007556 7.7e-51 205.7 563 32.5
Eucgr.F00766 Eucalyptus grandis HOM05D006489 ORTHO05D007556 7.7e-51 205.7 352 41.5
Oeu062694.1 Olea europaea HOM05D006489 ORTHO05D007556 6.5e-50 202.6 472 36.2
FAN21G0022 Fragaria x ananassa HOM05D006489 ORTHO05D007556 1.1e-49 201.8 395 39.0
Sed0018772 Sechium edule HOM05D006489 ORTHO05D007556 1.5e-49 201.4 522 35.1
MBI18_g45561_MAGBIO Magnolia biondii HOM05D006489 ORTHO05D007556 9.4e-49 198.7 496 34.7
RcHm_v2.0_Chr5g0039401 Rosa chinensis HOM05D006489 ORTHO05D007556 9.4e-49 198.7 450 36.0
CDE02G1695 Ceratophyllum demersum HOM05D006489 ORTHO05D007556 1.2e-48 198.4 507 32.7
FAN25G3282 Fragaria x ananassa HOM05D006489 ORTHO05D007556 1.6e-48 198.0 421 36.3
VMungo0647G1504 Vigna mungo HOM05D006489 ORTHO05D007556 1.8e-47 194.5 560 32.9
MD03G1201600 Malus domestica HOM05D006489 ORTHO05D007556 2.3e-47 194.1 530 33.2
Psat2g011040 Pisum sativum HOM05D006489 ORTHO05D007556 3.0e-47 193.7 521 34.5
Hma1.2p1_1162F.1_g262600 Hydrangea macrophylla HOM05D006489 ORTHO05D007556 1.2e-46 191.8 449 36.7
CDE05G3553 Ceratophyllum demersum HOM05D006489 ORTHO05D007556 5.7e-46 189.5 502 32.9
CANSAT11G2482 Cannabis sativa HOM05D006489 ORTHO05D007556 7.5e-46 189.1 542 31.9
MELO3C013233.2 Cucumis melo HOM05D006489 ORTHO05D007556 9.7e-46 188.7 515 34.4
Medtr5g092580 Medicago truncatula HOM05D006489 ORTHO05D007556 1.3e-45 188.3 600 31.3
Nn1g03547 Nelumbo nucifera HOM05D006489 ORTHO05D007556 1.7e-45 188.0 479 35.9
Migut.M01768 Erythranthe guttata HOM05D006489 ORTHO05D007556 2.2e-45 187.6 412 36.7
arahy.Tifrunner.gnm1.ann1.X6VDEX Arachis hypogaea HOM05D006489 ORTHO05D007556 2.8e-45 187.2 571 32.2
DCAR_022559 Daucus carota HOM05D006489 ORTHO05D007556 2.8e-45 187.2 485 36.9
Nitab4.5_0001913g0140 Nicotiana tabacum HOM05D006489 ORTHO05D007556 2.8e-45 187.2 439 37.6
FvH4_3g22630 Fragaria vesca HOM05D006489 ORTHO05D007556 3.7e-45 186.8 396 38.4
Nitab4.5_0011175g0010 Nicotiana tabacum HOM05D006489 ORTHO05D007556 8.2e-45 185.7 442 37.6
EL10Ac4g07823 Beta vulgaris HOM05D006489 ORTHO05D007556 1.1e-44 185.3 538 31.8
Atru.BG.151.p Acer truncatum HOM05D006489 ORTHO05D007556 1.4e-44 184.9 356 37.6
PSO675G7358 Papaver somniferum HOM05D006489 ORTHO05D007556 5.3e-44 183.0 305 40.0
TPR.G36685 Trifolium pratense HOM05D006489 ORTHO05D007556 3.5e-43 180.3 559 31.8
SGA_v2.0_scaffold80G25948 Striga asiatica HOM05D006489 ORTHO05D007556 4.5e-43 179.9 423 35.7
Lalb_Chr17g0348451 Lupinus albus HOM05D006489 ORTHO05D007556 5.9e-43 179.5 388 38.9
Phvul.008G267300 Phaseolus vulgaris HOM05D006489 ORTHO05D007556 1.0e-42 178.7 574 31.9
Thecc.07G037900 Theobroma cacao HOM05D006489 ORTHO05D007556 6.5e-42 176.0 353 39.1
HPP92_013323 Vanilla planifolia HOM05D006489 ORTHO05D007556 2.5e-41 174.1 521 33.6
AUR62020449 Chenopodium quinoa HOM05D006489 ORTHO05D007556 9.4e-41 172.2 526 31.9
PSO541G0970 Papaver somniferum HOM05D006489 ORTHO05D007556 9.4e-41 172.2 434 31.6
ClCG05G014300 Citrullus lanatus HOM05D006489 ORTHO05D007556 1.4e-39 168.3 503 33.6
Glyma.14G024100 Glycine max HOM05D006489 ORTHO05D007556 5.7e-38 162.9 439 31.7
CsaV3_7G021220 Cucumis sativus L. HOM05D006489 ORTHO05D007556 1.4e-36 158.3 480 32.3
Lj1A872T56 Lonicera japonica HOM05D006489 ORTHO05D007556 1.8e-36 157.9 331 34.1
Lalb_Chr10g0106941 Lupinus albus HOM05D006489 ORTHO05D007556 1.2e-35 155.2 369 34.7
Medtr6g033325 Medicago truncatula HOM05D006489 ORTHO05D007556 2.0e-35 154.5 583 30.4
Sed0021471 Sechium edule HOM05D006489 ORTHO05D007556 4.5e-35 153.3 402 33.8
FAN16G1490 Fragaria x ananassa HOM05D006489 ORTHO05D007556 1.6e-27 128.3 272 41.9
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 8.6e-26 122.5 458 33.4
Psat1g097920 Pisum sativum HOM05D006489 ORTHO05D007556 1.1e-25 122.1 337 33.8
Zm00001eb431300 Zea mays HOM05D006489 ORTHO05D007556 1.9e-25 121.3 431 29.7
Os04g0625100 Oryza sativa ssp. japonica HOM05D006489 ORTHO05D007556 6.1e-24 116.3 389 29.0
SEGI_05401 Sequoiadendron giganteum HOM05D006489 ORTHO05D007556 2.6e-22 110.9 516 30.0
Lsat_1_v5_gn_7_108561 Lactuca sativa HOM05D006489 ORTHO05D007556 7.5e-22 109.4 287 31.4
HanXRQChr11g0337701 Helianthus annuus HOM05D006489 ORTHO05D007556 2.4e-20 104.4 245 33.9
ECA236G1547 Erigeron canadensis HOM05D006489 ORTHO05D007556 1.7e-18 98.2 205 36.6
BcaB04g18327 Brassica carinata HOM05D000073 ORTHO05D000033 3.1e-15 87.4 91 58.2
Actinidia10733 Actinidia chinensis HOM05D006489 ORTHO05D007556 3.2e-12 77.4 167 36.5
Psat0s2568g0040 Pisum sativum HOM05D006489 ORTHO05D007556 5.4e-12 76.6 108 42.6
Lj8A169G92 Lonicera japonica HOM05D006489 ORTHO05D007556 1.5e-09 68.6 63 50.8


User provided reference genes

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