Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G20430 Arabidopsis thaliana HOM05D004579 ORTHO05D005376 3.1e-137 491.9 266 100.0
CARHR096140 Cardamine hirsuta HOM05D004579 ORTHO05D005376 7.8e-104 380.9 268 82.1
Sp3g18440 Schrenkiella parvula HOM05D004579 ORTHO05D005376 5.0e-103 378.3 267 78.7
Carub.0003s2037 Capsella rubella HOM05D004579 ORTHO05D005376 3.0e-100 369.0 266 79.3
A05p28470 Brassica napus HOM05D004579 ORTHO05D005376 3.4e-99 365.5 263 77.6
AL3G34150 Arabidopsis lyrata HOM05D004579 ORTHO05D005376 1.7e-98 363.2 254 81.9
BraA05t21726Z Brassica rapa HOM05D004579 ORTHO05D005376 2.2e-98 362.8 261 76.2
BcaB06g26108 Brassica carinata HOM05D004579 ORTHO05D005376 3.7e-98 362.1 263 77.2
BcaC05g28330 Brassica carinata HOM05D004579 ORTHO05D005376 4.9e-98 361.7 265 77.0
C05p43910 Brassica napus HOM05D004579 ORTHO05D005376 4.9e-98 361.7 265 77.0
BolC5t33107H Brassica oleracea HOM05D004579 ORTHO05D005376 4.9e-98 361.7 265 77.0
Thhalv10021403m.g Eutrema salsugineum HOM05D004579 ORTHO05D005376 3.1e-92 342.4 267 74.5
Aa31LG8G7240 Aethionema arabicum HOM05D004579 ORTHO05D005376 1.6e-88 330.1 266 73.7
Duzib168G1792 Durio zibethinus HOM05D004579 ORTHO05D005376 9.6e-54 214.5 264 51.9
Manes.03G046600 Manihot esculenta HOM05D004579 ORTHO05D005376 3.7e-53 212.6 262 50.0
THA.LOC104811250 Tarenaya hassleriana HOM05D004579 ORTHO05D005376 3.1e-52 209.5 261 55.2
Thecc.09G051200 Theobroma cacao HOM05D004579 ORTHO05D005376 7.6e-51 204.9 264 54.2
Prupe.1G414900 Prunus persica HOM05D004579 ORTHO05D005376 3.8e-50 202.6 268 49.3
Atru.chr7.2020 Acer truncatum HOM05D004579 ORTHO05D005376 4.9e-50 202.2 259 48.6
Sabra06G0181300 Salix brachista HOM05D004579 ORTHO05D005376 8.4e-50 201.4 265 53.2
Gorai.001G023600 Gossypium raimondii HOM05D004579 ORTHO05D005376 1.4e-49 200.7 258 46.9
Glyma.04G049800 Glycine max HOM05D004579 ORTHO05D005376 1.9e-49 200.3 264 50.8
Glyma.06G050800 Glycine max HOM05D004579 ORTHO05D005376 1.9e-49 200.3 264 51.1
Gohir.D05G045500 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.9e-49 200.3 262 52.7
Gohir.D07G022900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.9e-49 200.3 258 46.9
TWI63G0708 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 2.4e-49 199.9 265 53.6
Duzib187G0056 Durio zibethinus HOM05D004579 ORTHO05D005376 4.2e-49 199.1 259 51.7
TPR.G13109 Trifolium pratense HOM05D004579 ORTHO05D005376 4.2e-49 199.1 269 49.1
Gorai.009G046700 Gossypium raimondii HOM05D004579 ORTHO05D005376 2.1e-48 196.8 261 53.6
VMungo0647G1140 Vigna mungo HOM05D004579 ORTHO05D005376 2.1e-48 196.8 261 48.3
COL.COLO4_21028 Corchorus olitorius HOM05D004579 ORTHO05D005376 4.6e-48 195.7 258 47.7
FAN24G0041 Fragaria x ananassa HOM05D004579 ORTHO05D005376 6.0e-48 195.3 270 48.5
Lj1g0026801 Lotus japonicus HOM05D004579 ORTHO05D005376 7.9e-48 194.9 289 47.4
Potri.006G232800 Populus trichocarpa HOM05D004579 ORTHO05D005376 7.9e-48 194.9 260 52.3
Gohir.A05G043900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.0e-47 194.5 286 49.3
TWI34G1837 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 1.0e-47 194.5 257 51.0
FAN20G3218 Fragaria x ananassa HOM05D004579 ORTHO05D005376 3.0e-47 193.0 269 48.3
Phvul.009G076200 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 5.1e-47 192.2 266 48.9
QL02p103256 Quercus lobata HOM05D004579 ORTHO05D005376 6.7e-47 191.8 251 47.4
Ca_15870_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 1.1e-46 191.0 265 47.2
FvH4_2g32180 Fragaria vesca HOM05D004579 ORTHO05D005376 1.9e-46 190.3 268 48.1
QL07p000612 Quercus lobata HOM05D004579 ORTHO05D005376 1.9e-46 190.3 251 46.6
FAN15G2153 Fragaria x ananassa HOM05D004579 ORTHO05D005376 3.3e-46 189.5 269 48.0
Medtr1g016630 Medicago truncatula HOM05D004579 ORTHO05D005376 3.3e-46 189.5 273 48.0
Cfa017933 Carpinus fangiana HOM05D004579 ORTHO05D005376 4.3e-46 189.1 253 49.0
FAN27G3258 Fragaria x ananassa HOM05D004579 ORTHO05D005376 7.4e-46 188.3 269 47.6
arahy.Tifrunner.gnm1.ann1.Y2NPND Arachis hypogaea HOM05D004579 ORTHO05D005376 9.6e-46 188.0 259 51.7
CiPaw.15G041800 Carya illinoinensis HOM05D004579 ORTHO05D005376 1.6e-45 187.2 249 49.4
Psat5g036520 Pisum sativum HOM05D004579 ORTHO05D005376 1.6e-45 187.2 251 52.2
Lalb_Chr22g0355991 Lupinus albus HOM05D004579 ORTHO05D005376 2.1e-45 186.8 255 49.0
Lsat_1_v5_gn_6_7421 Lactuca sativa HOM05D004579 ORTHO05D005376 4.8e-45 185.7 253 48.6
arahy.Tifrunner.gnm1.ann1.A3GFYF Arachis hypogaea HOM05D004579 ORTHO05D005376 8.2e-45 184.9 257 49.4
CANSAT25G0619 Cannabis sativa HOM05D004579 ORTHO05D005376 3.1e-44 183.0 254 48.4
MELO3C022510.2 Cucumis melo HOM05D004579 ORTHO05D005376 3.1e-44 183.0 269 46.8
Lalb_Chr24g0399591 Lupinus albus HOM05D004579 ORTHO05D005376 3.1e-44 183.0 257 49.0
Eucgr.C00634 Eucalyptus grandis HOM05D004579 ORTHO05D005376 4.0e-44 182.6 263 51.7
Ca_02416_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 9.0e-44 181.4 260 46.5
Glyma.14G092900 Glycine max HOM05D004579 ORTHO05D005376 9.0e-44 181.4 251 47.4
Ciclev10009210m.g Citrus clementina HOM05D004579 ORTHO05D005376 1.2e-43 181.0 284 49.3
Migut.A00154 Erythranthe guttata HOM05D004579 ORTHO05D005376 2.0e-43 180.3 257 48.6
Sc09g0009680 Simmondsia chinensis HOM05D004579 ORTHO05D005376 2.0e-43 180.3 261 50.2
arahy.Tifrunner.gnm1.ann1.C5JVH4 Arachis hypogaea HOM05D004579 ORTHO05D005376 2.6e-43 179.9 251 45.8
ClCG06G000280 Citrullus lanatus HOM05D004579 ORTHO05D005376 4.5e-43 179.1 249 47.8
Manes.16G077900 Manihot esculenta HOM05D004579 ORTHO05D005376 4.5e-43 179.1 264 45.8
Hma1.2p1_1266F.1_g271430 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 7.6e-43 178.3 258 46.5
Solyc04g080350.4 Solanum lycopersicum HOM05D004579 ORTHO05D005376 7.6e-43 178.3 254 48.8
Dinv23423 Davidia involucrata HOM05D004579 ORTHO05D005376 1.7e-42 177.2 263 46.8
Nn8g38954 Nelumbo nucifera HOM05D004579 ORTHO05D005376 1.7e-42 177.2 262 42.0
CSS0030937 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 2.2e-42 176.8 261 46.0
HanXRQChr08g0226451 Helianthus annuus HOM05D004579 ORTHO05D005376 2.9e-42 176.4 258 47.3
HanXRQChr08g0226601 Helianthus annuus HOM05D004579 ORTHO05D005376 2.9e-42 176.4 258 47.3
PGSC0003DMG400005151 Solanum tuberosum HOM05D004579 ORTHO05D005376 2.9e-42 176.4 254 48.8
TAR383G0831 Trochodendron aralioides HOM05D004579 ORTHO05D005376 4.9e-42 175.6 268 44.4
arahy.Tifrunner.gnm1.ann1.XC2JTE Arachis hypogaea HOM05D004579 ORTHO05D005376 6.5e-42 175.3 253 45.8
Rhsim07G0143600 Rhododendron simsii HOM05D004579 ORTHO05D005376 1.4e-41 174.1 258 46.5
PGR031G0410 Punica granatum HOM05D004579 ORTHO05D005376 1.9e-41 173.7 259 46.7
GSVIVG01035344001 Vitis vinifera HOM05D004579 ORTHO05D005376 1.9e-41 173.7 180 52.8
SGA_v2.0_scaffold88G27218 Striga asiatica HOM05D004579 ORTHO05D005376 2.5e-41 173.3 259 45.9
Lj5g0003794 Lotus japonicus HOM05D004579 ORTHO05D005376 3.2e-41 172.9 249 49.4
Sopen04g033940 Solanum pennellii HOM05D004579 ORTHO05D005376 3.2e-41 172.9 251 47.0
Hund03357 Selenicereus undatus HOM05D004579 ORTHO05D005376 5.5e-41 172.2 300 44.3
Ah.11g044630 Amaranthus hybridus HOM05D004579 ORTHO05D005376 7.1e-41 171.8 263 46.0
DCAR_019057 Daucus carota HOM05D004579 ORTHO05D005376 7.1e-41 171.8 262 47.3
Gohir.A07G022140 Gossypium hirsutum HOM05D004579 ORTHO05D005376 9.3e-41 171.4 231 46.8
SalBow4G3199 Salvia bowleyana HOM05D004579 ORTHO05D005376 1.6e-40 170.6 275 43.6
CsaV3_6G006070 Cucumis sativus L. HOM05D004579 ORTHO05D005376 2.1e-40 170.2 264 43.9
Dinv27966 Davidia involucrata HOM05D004579 ORTHO05D005376 3.5e-40 169.5 253 41.9
FAN24G1203 Fragaria x ananassa HOM05D004579 ORTHO05D005376 6.0e-40 168.7 272 41.2
Nitab4.5_0008290g0030 Nicotiana tabacum HOM05D004579 ORTHO05D005376 6.0e-40 168.7 250 46.4
Peaxi162Scf00436g00719 Petunia axillaris HOM05D004579 ORTHO05D005376 6.0e-40 168.7 251 46.2
HanXRQChr09g0251171 Helianthus annuus HOM05D004579 ORTHO05D005376 1.0e-39 167.9 242 47.5
Nitab4.5_0000359g0090 Nicotiana tabacum HOM05D004579 ORTHO05D005376 1.0e-39 167.9 251 47.0
Nitab4.5_0006174g0020 Nicotiana tabacum HOM05D004579 ORTHO05D005376 1.0e-39 167.9 251 46.6
MSTRG.11672 Avicennia marina HOM05D004579 ORTHO05D005376 1.3e-39 167.5 259 43.6
EL10Ac2g03929 Beta vulgaris HOM05D004579 ORTHO05D005376 6.7e-39 165.2 262 44.7
Sed0027918 Sechium edule HOM05D004579 ORTHO05D005376 1.1e-38 164.5 169 52.7
CAN.G1226.13 Capsicum annuum HOM05D004579 ORTHO05D005376 2.5e-38 163.3 251 43.4
Sed0005208 Sechium edule HOM05D004579 ORTHO05D005376 5.7e-38 162.2 255 44.7
Actinidia14703 Actinidia chinensis HOM05D004579 ORTHO05D005376 1.3e-37 161.0 180 51.1
Psat6g019640 Pisum sativum HOM05D004579 ORTHO05D005376 1.3e-37 161.0 262 42.0
unitig_736.g22340 Utricularia gibba HOM05D004579 ORTHO05D005376 3.7e-37 159.5 251 42.6
Cc08_g10350 Coffea canephora HOM05D004579 ORTHO05D005376 4.8e-37 159.1 250 44.0
Haze_18215 Corylus avellana HOM05D004579 ORTHO05D005376 1.1e-36 157.9 311 38.3
VMungo1309G2710 Vigna mungo HOM05D004579 ORTHO05D005376 1.8e-36 157.1 261 44.4
PGR142G1482 Punica granatum HOM05D004579 ORTHO05D005376 6.9e-36 155.2 259 44.0
CDE02G1740 Ceratophyllum demersum HOM05D004579 ORTHO05D005376 9.0e-36 154.8 259 42.5
Aqoxy7G00927 Aquilegia oxysepala HOM05D004579 ORTHO05D005376 2.0e-35 153.7 261 43.3
TAR626G1184 Trochodendron aralioides HOM05D004579 ORTHO05D005376 7.6e-35 151.8 190 53.2
AUR62022041 Chenopodium quinoa HOM05D004579 ORTHO05D005376 1.3e-34 151.0 170 50.0
MBI01_g16584_MAGBIO Magnolia biondii HOM05D004579 ORTHO05D005376 1.1e-33 147.9 259 40.5
HPP92_014384 Vanilla planifolia HOM05D004579 ORTHO05D005376 1.1e-33 147.9 168 49.4
ECA233G0431 Erigeron canadensis HOM05D004579 ORTHO05D005376 2.5e-33 146.7 275 40.7
Nn6g35393 Nelumbo nucifera HOM05D004579 ORTHO05D005376 3.2e-33 146.4 262 41.2
Oeu018654.1 Olea europaea HOM05D004579 ORTHO05D005376 7.2e-33 145.2 176 51.7
Os01g0559200 Oryza sativa ssp. japonica HOM05D004579 ORTHO05D005376 3.6e-32 142.9 272 37.5
Zm00001eb356770 Zea mays HOM05D004579 ORTHO05D005376 4.6e-32 142.5 250 41.2
ATR0789G072 Amborella trichopoda HOM05D004579 ORTHO05D005376 1.0e-31 141.4 254 40.2
Oeu037326.2 Olea europaea HOM05D004579 ORTHO05D005376 6.7e-31 138.7 278 39.9
PSO210G6474 Papaver somniferum HOM05D004579 ORTHO05D005376 9.7e-30 134.8 271 42.1
PSO017G1019 Papaver somniferum HOM05D004579 ORTHO05D005376 1.1e-28 131.3 189 49.2
PSO210G6518 Papaver somniferum HOM05D004579 ORTHO05D005376 1.4e-28 131.0 271 40.2
Hund19474 Selenicereus undatus HOM05D004579 ORTHO05D005376 5.9e-27 125.6 363 33.1
vmacro05280 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 1.0e-26 124.8 364 33.2
CSS0042880 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 1.6e-24 117.5 155 44.5
TPR.G25353 Trifolium pratense HOM05D004579 ORTHO05D005376 3.6e-24 116.3 135 47.4
SEGI_10906 Sequoiadendron giganteum HOM05D004579 ORTHO05D005376 4.7e-24 115.9 211 39.8
RcHm_v2.0_Chr6g0310501 Rosa chinensis HOM05D004579 ORTHO05D005376 1.8e-23 114.0 143 49.0
Cpa.g.sc84.21 Carica papaya HOM05D004579 ORTHO05D005376 2.3e-23 113.6 262 41.6
MSTRG.25939 Avicennia marina HOM05D004579 ORTHO05D005376 1.3e-21 107.8 151 44.4
AUR62009186 Chenopodium quinoa HOM05D004579 ORTHO05D005376 2.4e-20 103.6 253 34.0
Mapoly0091s0021 Marchantia polymorpha HOM05D004579 ORTHO05D005376 5.9e-19 99.0 206 40.3
AagrBONN_evm.TU.Sc2ySwM_117.2939 Anthoceros agrestis HOM05D004579 ORTHO05D005376 3.8e-18 96.3 204 35.3
vmacro00165 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 9.4e-17 91.7 263 33.8
Actinidia18195 Actinidia chinensis HOM05D004579 ORTHO05D005376 2.1e-16 90.5 128 54.7
PSO063G4337 Papaver somniferum HOM05D004579 ORTHO05D005376 2.1e-16 90.5 240 36.7
RcHm_v2.0_Chr6g0310491 Rosa chinensis HOM05D004579 ORTHO05D005376 1.0e-15 88.2 129 48.8
Phvul.001G033700 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 1.8e-15 87.4 60 65.0
CBR_g36456 Chara braunii HOM05D004579 ORTHO05D005376 3.9e-15 86.3 222 29.7
arahy.Tifrunner.gnm1.ann1.E1I8FT Arachis hypogaea HOM05D004579 ORTHO05D005376 5.2e-15 85.9 159 40.3
PGSC0003DMG400032806 Solanum tuberosum HOM05D004579 ORTHO05D005376 2.2e-13 80.5 57 66.7
Pp3c10_2240 Physcomitrium patens HOM05D004579 ORTHO05D005376 2.8e-13 80.1 184 38.6
Hma1.2p1_1944F.1_g308530 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 7.0e-12 75.5 131 38.2
TPR.G25355 Trifolium pratense HOM05D004579 ORTHO05D005376 1.0e-10 71.6 116 48.3
QL03p011522 Quercus lobata HOM05D004579 ORTHO05D005376 1.7e-10 70.9 55 60.0
MCO09G383 Micromonas commoda HOM05D004579 ORTHO05D005376 6.7e-07 58.9 84 35.7
PSO017G0877 Papaver somniferum HOM05D004579 ORTHO05D005376 2.0e-06 57.4 43 58.1
PSO017G5975 Papaver somniferum HOM05D004579 ORTHO05D005376 2.0e-06 57.4 43 58.1


User provided reference genes

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