Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G20170 Arabidopsis thaliana HOM05D007725 ORTHO05D009774 3.7e-181 638.6 476 100.0
AL3G33870 Arabidopsis lyrata HOM05D007725 ORTHO05D009774 5.9e-171 604.7 476 94.3
Carub.0003s2010 Capsella rubella HOM05D007725 ORTHO05D009774 5.5e-161 571.6 473 94.1
CARHR095760 Cardamine hirsuta HOM05D007725 ORTHO05D009774 4.1e-156 555.4 474 90.5
Thhalv10020642m.g Eutrema salsugineum HOM05D007725 ORTHO05D009774 1.0e-146 524.2 474 88.2
Sp3g18200 Schrenkiella parvula HOM05D007725 ORTHO05D009774 6.2e-144 515.0 473 87.3
BcaB04g19094 Brassica carinata HOM05D007725 ORTHO05D009774 1.7e-141 506.9 475 86.7
Aa31LG8G7000 Aethionema arabicum HOM05D007725 ORTHO05D009774 6.4e-141 505.0 475 86.5
A03p41610 Brassica napus HOM05D007725 ORTHO05D009774 3.0e-138 496.1 475 84.4
BraA03t13314Z Brassica rapa HOM05D007725 ORTHO05D009774 3.0e-138 496.1 475 84.4
BolC3t17381H Brassica oleracea HOM05D007725 ORTHO05D009774 5.6e-137 491.9 475 83.2
BolC5t33143H Brassica oleracea HOM05D007725 ORTHO05D009774 1.2e-136 490.7 465 86.5
C03p50970 Brassica napus HOM05D007725 ORTHO05D009774 1.6e-136 490.3 475 83.2
C05p44210 Brassica napus HOM05D007725 ORTHO05D009774 1.6e-136 490.3 465 86.5
A05p28800 Brassica napus HOM05D007725 ORTHO05D009774 7.5e-134 481.5 465 85.6
BraA05t21757Z Brassica rapa HOM05D007725 ORTHO05D009774 1.5e-89 334.3 212 82.5
Duzib170G0716 Durio zibethinus HOM05D007725 ORTHO05D009774 2.5e-68 263.8 456 55.9
COL.COLO4_09791 Corchorus olitorius HOM05D007725 ORTHO05D009774 3.3e-65 253.4 461 60.1
Gohir.A11G277300 Gossypium hirsutum HOM05D007725 ORTHO05D009774 7.4e-65 252.3 462 49.8
Gorai.007G311000 Gossypium raimondii HOM05D007725 ORTHO05D009774 9.7e-65 251.9 461 46.2
BcaC01g03576 Brassica carinata HOM05D007725 ORTHO05D009774 3.7e-64 250.0 475 38.9
ClCG09G021110 Citrullus lanatus HOM05D007725 ORTHO05D009774 6.5e-61 239.2 460 59.8
Sopen12g007550 Solanum pennellii HOM05D007725 ORTHO05D009774 1.9e-60 237.7 457 56.7
Lj1P886T16 Lonicera japonica HOM05D007725 ORTHO05D009774 1.2e-59 235.0 458 62.0
VMungo0540G1375 Vigna mungo HOM05D007725 ORTHO05D009774 3.6e-59 233.4 462 56.3
Peaxi162Scf00955g00014 Petunia axillaris HOM05D007725 ORTHO05D009774 6.1e-59 232.6 460 55.0
CSS0027076 Camellia sinensis var. sinensis HOM05D007725 ORTHO05D009774 8.0e-59 232.3 476 52.5
Glyma.08G326100 Glycine max HOM05D007725 ORTHO05D009774 8.0e-59 232.3 465 57.0
PGSC0003DMG402029798 Solanum tuberosum HOM05D007725 ORTHO05D009774 8.0e-59 232.3 457 56.5
Solyc12g015650.3 Solanum lycopersicum HOM05D007725 ORTHO05D009774 5.2e-58 229.6 457 55.8
GSVIVG01037783001 Vitis vinifera HOM05D007725 ORTHO05D009774 5.2e-58 229.6 457 55.1
Cpa.g.sc12.189 Carica papaya HOM05D007725 ORTHO05D009774 5.7e-57 226.1 476 56.3
Cfa020227 Carpinus fangiana HOM05D007725 ORTHO05D009774 7.5e-57 225.7 492 55.9
MELO3C024908.2 Cucumis melo HOM05D007725 ORTHO05D009774 7.5e-57 225.7 446 57.8
Gohir.D11G287700 Gossypium hirsutum HOM05D007725 ORTHO05D009774 9.7e-57 225.3 463 42.8
Nitab4.5_0002517g0030 Nicotiana tabacum HOM05D007725 ORTHO05D009774 1.7e-56 224.6 457 53.6
Medtr3g056580 Medicago truncatula HOM05D007725 ORTHO05D009774 6.3e-56 222.6 462 44.6
Psat5g175640 Pisum sativum HOM05D007725 ORTHO05D009774 6.3e-56 222.6 469 60.1
Ciclev10008214m.g Citrus clementina HOM05D007725 ORTHO05D009774 1.1e-55 221.9 465 56.8
Haze_09790 Corylus avellana HOM05D007725 ORTHO05D009774 1.1e-55 221.9 488 58.4
PSO478G1598 Papaver somniferum HOM05D007725 ORTHO05D009774 3.5e-54 216.9 464 58.8
CsaV3_7G018510 Cucumis sativus L. HOM05D007725 ORTHO05D009774 2.2e-53 214.2 462 58.4
arahy.Tifrunner.gnm1.ann1.Q8DMES Arachis hypogaea HOM05D007725 ORTHO05D009774 8.5e-53 212.2 452 60.8
GSVIVG01037784001 Vitis vinifera HOM05D007725 ORTHO05D009774 1.5e-52 211.5 451 57.4
arahy.Tifrunner.gnm1.ann1.LCTM2T Arachis hypogaea HOM05D007725 ORTHO05D009774 2.5e-52 210.7 452 57.7
arahy.Tifrunner.gnm1.ann1.TWJV4J Arachis hypogaea HOM05D007725 ORTHO05D009774 2.5e-52 210.7 452 57.3
Nitab4.5_0000163g0300 Nicotiana tabacum HOM05D007725 ORTHO05D009774 5.5e-52 209.5 457 58.2
Manes.03G138100 Manihot esculenta HOM05D007725 ORTHO05D009774 4.0e-50 203.4 456 59.4
Cc05_g14730 Coffea canephora HOM05D007725 ORTHO05D009774 6.8e-50 202.6 459 57.7
Sed0002917 Sechium edule HOM05D007725 ORTHO05D009774 1.2e-49 201.8 476 57.1
Nn1g03245 Nelumbo nucifera HOM05D007725 ORTHO05D009774 1.5e-49 201.4 462 51.9
Ca_26464_v3 Cicer arietinum L. HOM05D007725 ORTHO05D009774 2.6e-49 200.7 463 48.6
Hma1.2p1_2796F.1_g328670 Hydrangea macrophylla HOM05D007725 ORTHO05D009774 2.2e-48 197.6 459 58.4
Nn1g07446 Nelumbo nucifera HOM05D007725 ORTHO05D009774 1.4e-47 194.9 464 47.2
HanXRQChr11g0333971 Helianthus annuus HOM05D007725 ORTHO05D009774 3.1e-47 193.7 459 45.1
TAR624G0507 Trochodendron aralioides HOM05D007725 ORTHO05D009774 4.1e-47 193.4 475 56.6
EL10Ac4g07611 Beta vulgaris HOM05D007725 ORTHO05D009774 1.3e-45 188.3 342 55.3
Dinv10315 Davidia involucrata HOM05D007725 ORTHO05D009774 1.7e-45 188.0 343 56.3
Nn1g03425 Nelumbo nucifera HOM05D007725 ORTHO05D009774 1.1e-44 185.3 443 58.2
TPR.G1953 Trifolium pratense HOM05D007725 ORTHO05D009774 1.5e-44 184.9 475 30.9
QL08p005480 Quercus lobata HOM05D007725 ORTHO05D009774 9.5e-44 182.2 476 50.4
MSTRG.15782 Avicennia marina HOM05D007725 ORTHO05D009774 1.2e-43 181.8 474 57.8
DCAR_022605 Daucus carota HOM05D007725 ORTHO05D009774 5.2e-42 176.4 437 46.2
Migut.M01753 Erythranthe guttata HOM05D007725 ORTHO05D009774 2.8e-40 170.6 466 56.9
Lj6g0016094 Lotus japonicus HOM05D007725 ORTHO05D009774 1.1e-39 168.7 455 54.5
Phvul.006G053700 Phaseolus vulgaris HOM05D007725 ORTHO05D009774 3.1e-39 167.2 358 61.5
PGR031G2940 Punica granatum HOM05D007725 ORTHO05D009774 1.2e-38 165.2 471 42.9
Lj6g0024671 Lotus japonicus HOM05D007725 ORTHO05D009774 7.8e-38 162.5 453 53.6
Lj2g0017250 Lotus japonicus HOM05D007725 ORTHO05D009774 5.0e-37 159.8 455 39.3
AUR62017062 Chenopodium quinoa HOM05D007725 ORTHO05D009774 1.1e-36 158.7 344 49.7
AUR62040655 Chenopodium quinoa HOM05D007725 ORTHO05D009774 3.6e-35 153.7 457 52.7
ATR1149G149 Amborella trichopoda HOM05D007725 ORTHO05D009774 1.8e-34 151.4 455 53.4
Oeu005490.1 Olea europaea HOM05D007725 ORTHO05D009774 4.0e-34 150.2 213 43.2
SEGI_22467 Sequoiadendron giganteum HOM05D007725 ORTHO05D009774 4.0e-34 150.2 347 51.6
Lj6g0003901 Lotus japonicus HOM05D007725 ORTHO05D009774 6.8e-34 149.4 348 50.0
SGA_v2.0_scaffold168G38532 Striga asiatica HOM05D007725 ORTHO05D009774 1.1e-31 142.1 360 32.2
SalBow8G2031 Salvia bowleyana HOM05D007725 ORTHO05D009774 1.3e-29 135.2 421 58.0
COL.COLO4_09793 Corchorus olitorius HOM05D007725 ORTHO05D009774 5.2e-26 123.2 185 41.1
Thecc.07G022000 Theobroma cacao HOM05D007725 ORTHO05D009774 2.7e-22 110.9 175 39.4
C04p21250 Brassica napus HOM05D007725 ORTHO05D009774 1.0e-21 109.0 104 57.7
BcaC02g11621 Brassica carinata HOM05D007725 ORTHO05D009774 2.3e-21 107.8 66 81.8
BcaC02g11617 Brassica carinata HOM05D007725 ORTHO05D009774 1.5e-17 95.1 182 50.5
HPP92_006089 Vanilla planifolia HOM05D007725 ORTHO05D009774 1.5e-17 95.1 345 46.4
TPR.G1910 Trifolium pratense HOM05D007725 ORTHO05D009774 1.7e-13 81.6 68 58.8
BcaB06g26090 Brassica carinata HOM05D007725 ORTHO05D009774 5.8e-09 66.6 37 91.9


User provided reference genes

Program Settings