Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G20070 Arabidopsis thaliana HOM05D001447 ORTHO05D005923 1.8e-130 469.5 283 100.0
AL3G33750 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 2.5e-108 396.0 290 73.8
Carub.0003s1999 Capsella rubella HOM05D001447 ORTHO05D005923 2.1e-99 366.3 283 73.9
CARHR095600 Cardamine hirsuta HOM05D001447 ORTHO05D005923 6.1e-99 364.8 281 68.7
Sp3g18100 Schrenkiella parvula HOM05D001447 ORTHO05D005923 4.2e-92 342.0 283 64.7
Thhalv10021184m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 5.4e-79 298.5 309 56.6
Aa31LG8G6860 Aethionema arabicum HOM05D001447 ORTHO05D005923 6.0e-78 295.0 283 57.6
BcaB06g26078 Brassica carinata HOM05D001447 ORTHO05D005923 2.1e-70 270.0 301 54.8
C05p44410 Brassica napus HOM05D001447 ORTHO05D005923 2.1e-70 270.0 281 56.6
BolC5t33164H Brassica oleracea HOM05D001447 ORTHO05D005923 2.1e-70 270.0 281 56.6
BraA05t21783Z Brassica rapa HOM05D001447 ORTHO05D005923 2.8e-67 259.6 281 55.2
BcaC05g28363 Brassica carinata HOM05D001447 ORTHO05D005923 1.3e-64 250.8 281 54.8
A05p29010 Brassica napus HOM05D001447 ORTHO05D005923 8.3e-64 248.1 304 51.3
THA.LOC104809267 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 4.6e-62 242.3 299 48.8
THA.LOC104811411 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 8.6e-61 238.0 281 50.9
Cfa009826 Carpinus fangiana HOM05D001447 ORTHO05D008204 3.3e-52 209.5 301 44.5
CiPaw.13G153600 Carya illinoinensis HOM05D001447 ORTHO05D005923 3.4e-49 199.5 297 43.8
Thecc.09G241000 Theobroma cacao HOM05D001447 ORTHO05D005923 8.4e-48 194.9 309 41.4
Cpa.g.sc84.6 Carica papaya HOM05D001447 ORTHO05D005923 1.0e-45 188.0 305 41.3
Haze_23187 Corylus avellana HOM05D001447 ORTHO05D005923 1.0e-45 188.0 296 42.6
COL.COLO4_36479 Corchorus olitorius HOM05D001447 ORTHO05D005923 3.0e-45 186.4 242 46.3
Gohir.A09G111500 Gossypium hirsutum HOM05D001447 ORTHO05D005923 3.9e-45 186.0 311 40.5
Manes.09G003800 Manihot esculenta HOM05D001447 ORTHO05D005923 1.5e-44 184.1 308 40.3
Gohir.D09G108100 Gossypium hirsutum HOM05D001447 ORTHO05D005923 1.9e-44 183.7 306 39.5
Gorai.006G125800 Gossypium raimondii HOM05D001447 ORTHO05D005923 1.9e-44 183.7 306 39.5
Gohir.D05G073400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 9.6e-44 181.4 287 42.9
Dinv36208 Davidia involucrata HOM05D001447 ORTHO05D005923 1.3e-43 181.0 308 40.9
Gorai.009G074300 Gossypium raimondii HOM05D001447 ORTHO05D005923 1.6e-43 180.6 308 39.6
TWI23G0345 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 1.6e-43 180.6 328 39.0
Prupe.4G257000 Prunus persica HOM05D001447 ORTHO05D005923 8.1e-43 178.3 309 38.8
TAR369G0010 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.1e-42 177.9 317 38.2
Duzib168G0657 Durio zibethinus HOM05D001447 ORTHO05D005923 1.8e-42 177.2 264 43.2
Manes.06G161200 Manihot esculenta HOM05D001447 ORTHO05D005923 1.8e-42 177.2 308 38.3
CANSAT54G2333 Cannabis sativa HOM05D001447 ORTHO05D005923 2.4e-42 176.8 316 37.7
Nn2g15058 Nelumbo nucifera HOM05D001447 ORTHO05D005923 4.0e-42 176.0 310 39.0
GSVIVG01031554001 Vitis vinifera HOM05D001447 ORTHO05D005923 5.3e-42 175.6 313 39.3
RcHm_v2.0_Chr5g0051191 Rosa chinensis HOM05D001447 ORTHO05D005923 1.2e-41 174.5 314 36.9
Oeu038401.1 Olea europaea HOM05D001447 ORTHO05D005923 2.0e-41 173.7 299 40.1
Thhalv10023995m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 4.5e-41 172.6 239 48.5
TWI14G1124 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 5.8e-41 172.2 330 38.5
BolC4t26880H Brassica oleracea HOM05D001447 ORTHO05D005923 9.9e-41 171.4 201 54.2
ClCG02G023020 Citrullus lanatus HOM05D001447 ORTHO05D008204 1.7e-40 170.6 311 39.5
BcaB06g26464 Brassica carinata HOM05D001447 ORTHO05D005923 4.9e-40 169.1 163 60.7
BcaB01g01441 Brassica carinata HOM05D001447 ORTHO05D005923 1.9e-39 167.2 208 50.0
CAN.G625.44 Capsicum annuum HOM05D001447 ORTHO05D005923 1.9e-39 167.2 296 37.2
TAR623G1061 Trochodendron aralioides HOM05D001447 ORTHO05D005923 5.4e-39 165.6 267 41.2
Sopen02g030930 Solanum pennellii HOM05D001447 ORTHO05D005923 7.1e-39 165.2 297 38.7
MELO3C014572.2 Cucumis melo HOM05D001447 ORTHO05D005923 1.6e-38 164.1 312 38.1
MSTRG.11555 Avicennia marina HOM05D001447 ORTHO05D005923 2.7e-38 163.3 296 38.9
CsaV3_6G039120 Cucumis sativus L. HOM05D001447 ORTHO05D008204 2.7e-38 163.3 303 37.6
BcaB02g07197 Brassica carinata HOM05D001447 ORTHO05D005923 1.0e-37 161.4 118 71.2
Solyc02g086250.4 Solanum lycopersicum HOM05D001447 ORTHO05D005923 1.8e-37 160.6 297 38.0
FvH4_3g28310 Fragaria vesca HOM05D001447 ORTHO05D005923 3.0e-37 159.8 313 34.8
FAN11G3154 Fragaria x ananassa HOM05D001447 ORTHO05D005923 3.0e-37 159.8 313 34.8
Glyma.18G222500 Glycine max HOM05D001447 ORTHO05D005923 3.9e-37 159.5 298 38.6
LjContig00136g0008106 Lotus japonicus HOM05D001447 ORTHO05D005923 3.9e-37 159.5 300 37.3
FAN16G0976 Fragaria x ananassa HOM05D001447 ORTHO05D005923 8.7e-37 158.3 313 34.8
Gohir.A05G070400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 8.7e-37 158.3 299 37.8
Eucgr.J00732 Eucalyptus grandis HOM05D001447 ORTHO05D005923 1.5e-36 157.5 312 36.9
MD11G1187600 Malus domestica HOM05D001447 ORTHO05D005923 1.5e-36 157.5 288 36.8
CSS0020855 Camellia sinensis var. sinensis HOM05D001447 ORTHO05D005923 1.9e-36 157.1 316 38.9
Potri.009G049500 Populus trichocarpa HOM05D001447 ORTHO05D005923 2.5e-36 156.8 309 37.9
Actinidia06934 Actinidia chinensis HOM05D001447 ORTHO05D008204 3.3e-36 156.4 312 38.1
MD03G1170100 Malus domestica HOM05D001447 ORTHO05D005923 5.6e-36 155.6 291 37.8
VMungo1383G2912 Vigna mungo HOM05D001447 ORTHO05D005923 7.4e-36 155.2 290 37.9
PGR119G0225 Punica granatum HOM05D001447 ORTHO05D005923 1.6e-35 154.1 303 37.6
Glyma.10G069400 Glycine max HOM05D001447 ORTHO05D005923 4.8e-35 152.5 298 38.6
AUR62000166 Chenopodium quinoa HOM05D001447 ORTHO05D005923 6.2e-35 152.1 300 37.0
Hma1.2p1_1503F.1_g287490 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 6.2e-35 152.1 291 36.4
Glyma.09G267400 Glycine max HOM05D001447 ORTHO05D005923 1.8e-34 150.6 300 37.7
FAN21G0933 Fragaria x ananassa HOM05D001447 ORTHO05D005923 2.4e-34 150.2 317 34.7
Lsat_1_v5_gn_2_28360 Lactuca sativa HOM05D001447 ORTHO05D005923 4.0e-34 149.4 289 36.0
Phvul.008G074800 Phaseolus vulgaris HOM05D001447 ORTHO05D005923 4.0e-34 149.4 288 35.8
Cc01_g06480 Coffea canephora HOM05D001447 ORTHO05D005923 6.9e-34 148.7 311 36.7
PSO170G2976 Papaver somniferum HOM05D001447 ORTHO05D005923 6.9e-34 148.7 290 36.6
Nitab4.5_0003652g0030 Nicotiana tabacum HOM05D001447 ORTHO05D005923 9.0e-34 148.3 300 37.0
Migut.O00259 Erythranthe guttata HOM05D001447 ORTHO05D005923 1.2e-33 147.9 285 36.5
Glyma.13G152406 Glycine max HOM05D001447 ORTHO05D005923 1.2e-33 147.9 306 35.9
PSO384G1304 Papaver somniferum HOM05D001447 ORTHO05D005923 1.5e-33 147.5 297 35.4
Medtr7g075050 Medicago truncatula HOM05D001447 ORTHO05D005923 4.5e-33 146.0 297 36.4
Lalb_Chr17g0336631 Lupinus albus HOM05D001447 ORTHO05D005923 5.8e-33 145.6 332 34.3
PSO339G5991 Papaver somniferum HOM05D001447 ORTHO05D005923 7.6e-33 145.2 297 35.4
FAN25G1867 Fragaria x ananassa HOM05D001447 ORTHO05D005923 9.9e-33 144.8 313 34.8
TPR.G26927 Trifolium pratense HOM05D001447 ORTHO05D005923 2.9e-32 143.3 298 34.6
ECA233G1682 Erigeron canadensis HOM05D001447 ORTHO05D005923 3.8e-32 142.9 305 36.1
Medtr8g059560 Medicago truncatula HOM05D001447 ORTHO05D005923 4.9e-32 142.5 299 34.1
arahy.Tifrunner.gnm1.ann1.Q3UL2U Arachis hypogaea HOM05D001447 ORTHO05D005923 1.4e-31 141.0 306 36.9
AUR62039845 Chenopodium quinoa HOM05D001447 ORTHO05D005923 1.4e-31 141.0 313 34.5
Lalb_Chr20g0108071 Lupinus albus HOM05D001447 ORTHO05D005923 1.4e-31 141.0 335 33.4
Peaxi162Scf00394g00910 Petunia axillaris HOM05D001447 ORTHO05D005923 1.4e-31 141.0 239 40.2
Sc09g0000900 Simmondsia chinensis HOM05D001447 ORTHO05D005923 2.4e-31 140.2 293 33.4
Hund21995 Selenicereus undatus HOM05D001447 ORTHO05D005923 1.2e-30 137.9 326 35.0
arahy.Tifrunner.gnm1.ann1.QJKL08 Arachis hypogaea HOM05D001447 ORTHO05D005923 7.9e-30 135.2 302 36.1
MBI13_g04766_MAGBIO Magnolia biondii HOM05D001447 ORTHO05D005923 7.9e-30 135.2 314 35.4
Ah.06g193790 Amaranthus hybridus HOM05D001447 ORTHO05D005923 1.8e-29 134.0 298 35.2
Hma1.2p1_1116F.1_g258880 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 3.0e-29 133.3 247 37.7
Atru.chr3.2630 Acer truncatum HOM05D001447 ORTHO05D005923 3.9e-29 132.9 350 30.6
Nitab4.5_0000753g0110 Nicotiana tabacum HOM05D001447 ORTHO05D005923 5.6e-28 129.0 295 34.9
HanXRQChr14g0441711 Helianthus annuus HOM05D001447 ORTHO05D005923 7.4e-28 128.6 288 35.8
PGSC0003DMG400026385 Solanum tuberosum HOM05D001447 ORTHO05D005923 9.6e-28 128.3 298 32.2
Psat3g114240 Pisum sativum HOM05D001447 ORTHO05D005923 1.6e-27 127.5 291 36.1
SalBow4G0828 Salvia bowleyana HOM05D001447 ORTHO05D005923 3.7e-27 126.3 354 30.8
HPP92_015725 Vanilla planifolia HOM05D001447 ORTHO05D005923 3.7e-27 126.3 286 31.5
TAR623G1057 Trochodendron aralioides HOM05D001447 ORTHO05D005923 4.8e-27 125.9 226 38.5
TAR623G0977 Trochodendron aralioides HOM05D001447 ORTHO05D005923 8.2e-27 125.2 222 39.6
VMungo0540G1247 Vigna mungo HOM05D001447 ORTHO05D003921 1.8e-26 124.0 309 34.0
Ciclev10006845m.g Citrus clementina HOM05D001447 ORTHO05D005923 2.4e-26 123.6 287 33.8
QL01p018064 Quercus lobata HOM05D001447 ORTHO05D005923 3.1e-26 123.2 212 42.9
Actinidia16355 Actinidia chinensis HOM05D001447 ORTHO05D005923 1.5e-25 120.9 375 29.9
EL10Ac4g10184 Beta vulgaris HOM05D001447 ORTHO05D005923 2.0e-25 120.6 279 33.0
DCAR_002089 Daucus carota HOM05D001447 ORTHO05D005923 5.8e-25 119.0 149 43.6
PSO210G7517 Papaver somniferum HOM05D001447 ORTHO05D005923 7.6e-25 118.6 288 34.4
ECA234G3051 Erigeron canadensis HOM05D001447 ORTHO05D005923 1.0e-24 118.2 291 34.4
BcaC01g05497 Brassica carinata HOM05D001447 ORTHO05D005923 1.7e-24 117.5 117 56.4
BcaC02g08532 Brassica carinata HOM05D001447 ORTHO05D005923 3.8e-24 116.3 117 56.4
Aqoxy2G00276 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 1.6e-22 110.9 308 31.2
BcaC03g18319 Brassica carinata HOM05D001447 ORTHO05D005923 2.7e-22 110.2 106 58.5
Sed0027916 Sechium edule HOM05D001447 ORTHO05D005923 1.8e-21 107.5 301 31.6
Lj2A623T26 Lonicera japonica HOM05D001447 ORTHO05D005923 1.1e-20 104.8 209 36.4
Lj5A793G14 Lonicera japonica HOM05D001447 ORTHO05D005923 2.5e-20 103.6 213 36.6
Aqoxy2G00275 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 4.3e-20 102.8 305 30.8
vmacro04118 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 5.7e-20 102.4 125 45.6
vmacro10456 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 5.7e-20 102.4 325 30.5
ATR0681G241 Amborella trichopoda HOM05D001447 ORTHO05D005923 1.6e-19 100.9 325 30.2
Os06g0245600 Oryza sativa ssp. japonica HOM05D001447 ORTHO05D005923 2.8e-19 100.1 227 29.5
unitig_8.g3773 Utricularia gibba HOM05D001447 ORTHO05D005923 6.3e-19 99.0 99 49.5
BcaC04g19960 Brassica carinata HOM05D001447 ORTHO05D005923 1.8e-18 97.4 120 50.8
SHI27451 Sapria himalayana HOM05D001447 ORTHO05D000654 1.8e-18 97.4 144 39.6
Rhsim13G0217200 Rhododendron simsii HOM05D001447 ORTHO05D005923 3.1e-18 96.7 340 30.3
BcaC03g16136 Brassica carinata HOM05D015278 ORTHO05D032781 1.5e-17 94.4 184 39.7
CDE02G0596 Ceratophyllum demersum HOM05D001447 ORTHO05D005923 7.7e-17 92.0 100 46.0
SGA_v2.0_scaffold25G10748 Striga asiatica HOM05D001447 ORTHO05D005923 3.8e-16 89.7 198 34.3
TAR622G0649 Trochodendron aralioides HOM05D000050 ORTHO05D000654 2.3e-13 80.5 55 65.5
AL6G53120 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 5.1e-13 79.3 59 71.2
Zm00001eb128570 Zea mays HOM05D001447 ORTHO05D005923 1.5e-12 77.8 194 31.4
AL1G58150 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 7.4e-12 75.5 98 49.0
Aa31LG7G13510 Aethionema arabicum HOM05D001447 ORTHO05D005923 1.8e-10 70.9 151 39.1
SEGI_06958 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 2.4e-10 70.5 341 23.8
HanXRQChr04g0117031 Helianthus annuus HOM05D001447 ORTHO05D005923 6.9e-10 68.9 205 30.2
TAR623G0319 Trochodendron aralioides HOM05D001447 ORTHO05D005923 3.4e-09 66.6 191 33.0
TAR623G0653 Trochodendron aralioides HOM05D001447 ORTHO05D005923 4.5e-09 66.2 55 56.4
SMO200G0114 Selaginella moellendorffii HOM05D004617 ORTHO05D005531 1.0e-08 65.1 204 26.0
C02p39380 Brassica napus HOM05D015278 ORTHO05D032781 8.5e-08 62.0 66 57.6
BolC2t09948H Brassica oleracea HOM05D015278 ORTHO05D032781 8.5e-08 62.0 66 57.6
SEGI_16617 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 4.2e-07 59.7 84 32.1
C09p74960 Brassica napus HOM05D015278 ORTHO05D005923 2.7e-06 57.0 64 56.2


User provided reference genes

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