Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G19660 Arabidopsis thaliana HOM05D001568 ORTHO05D004404 8.7e-25 116.3 65 100.0
AL3G33100 Arabidopsis lyrata HOM05D001568 ORTHO05D004404 4.3e-24 114.0 65 98.5
Carub.0003s1953 Capsella rubella HOM05D001568 ORTHO05D004404 1.3e-23 112.5 65 96.9
CARHR095120 Cardamine hirsuta HOM05D001568 ORTHO05D004404 8.1e-23 109.8 65 92.3
Aa31LG8G6440 Aethionema arabicum HOM05D001568 ORTHO05D004404 8.4e-20 99.8 64 89.1
BcaB06g26036 Brassica carinata HOM05D001568 ORTHO05D004404 1.2e-18 95.9 65 86.2
BcaC05g28437 Brassica carinata HOM05D001568 ORTHO05D004404 1.6e-18 95.5 64 85.9
C05p45170 Brassica napus HOM05D001568 ORTHO05D004404 1.6e-18 95.5 64 85.9
BolC5t33243H Brassica oleracea HOM05D001568 ORTHO05D004404 1.6e-18 95.5 64 85.9
A05p29940 Brassica napus HOM05D001568 ORTHO05D004404 3.5e-18 94.4 64 84.4
BraA05t21839Z Brassica rapa HOM05D001568 ORTHO05D004404 3.5e-18 94.4 64 84.4
A01p35050 Brassica napus HOM05D001568 ORTHO05D004404 1.0e-17 92.8 64 81.2
BraA01t03586Z Brassica rapa HOM05D001568 ORTHO05D004404 1.0e-17 92.8 64 81.2
THA.LOC104803443 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 1.9e-16 88.6 68 72.1
Hma1.2p1_1051F.1_g252100 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 1.3e-15 85.9 63 73.0
Hma1.2p1_2793F.1_g328635 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 1.3e-15 85.9 63 73.0
Cpa.g.sc106.34 Carica papaya HOM05D001568 ORTHO05D004404 8.2e-15 83.2 63 73.0
Oeu037288.1 Olea europaea HOM05D001568 ORTHO05D004404 1.1e-14 82.8 65 67.7
Manes.07G057600 Manihot esculenta HOM05D001568 ORTHO05D004404 1.8e-14 82.0 63 71.4
RcHm_v2.0_Chr6g0248611 Rosa chinensis HOM05D001568 ORTHO05D004404 2.4e-14 81.6 60 75.0
PGSC0003DMG400025934 Solanum tuberosum HOM05D001568 ORTHO05D004404 2.4e-14 81.6 63 71.4
Manes.10G086400 Manihot esculenta HOM05D001568 ORTHO05D004404 3.1e-14 81.3 63 69.8
Potri.001G290200 Populus trichocarpa HOM05D001568 ORTHO05D004404 5.3e-14 80.5 63 68.3
FAN15G0246 Fragaria x ananassa HOM05D001568 ORTHO05D004404 6.9e-14 80.1 64 73.4
PSO017G7292 Papaver somniferum HOM05D001568 ORTHO05D004404 6.9e-14 80.1 65 69.2
PSO170G4708 Papaver somniferum HOM05D001568 ORTHO05D004404 6.9e-14 80.1 65 69.2
PGSC0003DMG400012835 Solanum tuberosum HOM05D001568 ORTHO05D004404 6.9e-14 80.1 63 68.3
CAN.G606.68 Capsicum annuum HOM05D001568 ORTHO05D004404 9.0e-14 79.7 63 69.8
MELO3C018020.2 Cucumis melo HOM05D001568 ORTHO05D004404 9.0e-14 79.7 63 71.4
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 9.0e-14 79.7 63 68.3
TAR376G0823 Trochodendron aralioides HOM05D001568 ORTHO05D004404 9.0e-14 79.7 63 68.3
CSS0019733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 1.2e-13 79.3 64 70.3
CsaV3_4G000120 Cucumis sativus L. HOM05D001568 ORTHO05D004404 1.2e-13 79.3 63 69.8
Gohir.D02G203199 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.2e-13 79.3 66 71.2
Solyc01g106890.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 1.2e-13 79.3 63 68.3
Sopen01g049170 Solanum pennellii HOM05D001568 ORTHO05D004404 1.2e-13 79.3 63 68.3
Thecc.02G119400 Theobroma cacao HOM05D001568 ORTHO05D004404 1.2e-13 79.3 65 69.2
TAR625G0364 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.5e-13 79.0 63 68.3
FAN24G1537 Fragaria x ananassa HOM05D001568 ORTHO05D004404 2.0e-13 78.6 60 76.7
Potri.009G085800 Populus trichocarpa HOM05D001568 ORTHO05D004404 2.0e-13 78.6 64 68.8
QL11p029492 Quercus lobata HOM05D001568 ORTHO05D004404 2.0e-13 78.6 60 71.7
COL.COLO4_32490 Corchorus olitorius HOM05D001568 ORTHO05D004404 2.6e-13 78.2 66 68.2
FvH4_2g03450 Fragaria vesca HOM05D001568 ORTHO05D004404 2.6e-13 78.2 59 78.0
CANSAT25G0020 Cannabis sativa HOM05D001568 ORTHO05D004404 3.4e-13 77.8 62 72.6
Haze_10310 Corylus avellana HOM05D001568 ORTHO05D004404 3.4e-13 77.8 64 68.8
Nitab4.5_0001099g0080 Nicotiana tabacum HOM05D001568 ORTHO05D004404 3.4e-13 77.8 63 68.3
Oeu021354.1 Olea europaea HOM05D001568 ORTHO05D004404 3.4e-13 77.8 63 65.1
Peaxi162Scf00016g03013 Petunia axillaris HOM05D001568 ORTHO05D004404 3.4e-13 77.8 60 71.7
CSS0000365 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 4.5e-13 77.4 65 67.7
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 4.5e-13 77.4 61 67.2
Nitab4.5_0001458g0030 Nicotiana tabacum HOM05D001568 ORTHO05D004404 5.9e-13 77.0 60 70.0
Peaxi162Scf00003g02832 Petunia axillaris HOM05D001568 ORTHO05D004404 5.9e-13 77.0 61 68.9
Gohir.A03G181200 Gossypium hirsutum HOM05D001568 ORTHO05D004404 7.6e-13 76.6 66 69.7
MD10G1109000 Malus domestica HOM05D001568 ORTHO05D004404 7.6e-13 76.6 61 73.8
Nn5g30644 Nelumbo nucifera HOM05D001568 ORTHO05D004404 7.6e-13 76.6 63 65.1
TWI59G0092 Tripterygium wilfordii HOM05D001568 ORTHO05D004404 7.6e-13 76.6 65 66.2
TAR628G0963 Trochodendron aralioides HOM05D001568 ORTHO05D004404 7.6e-13 76.6 63 66.7
MD05G1104700 Malus domestica HOM05D001568 ORTHO05D004404 1.0e-12 76.3 61 73.8
Nn6g34513 Nelumbo nucifera HOM05D001568 ORTHO05D004404 1.0e-12 76.3 63 66.7
Sed0001915 Sechium edule HOM05D001568 ORTHO05D004404 1.0e-12 76.3 64 68.8
CiPaw.05G020400 Carya illinoinensis HOM05D001568 ORTHO05D004404 1.7e-12 75.5 61 72.1
ClCG10G010080 Citrullus lanatus HOM05D001568 ORTHO05D004404 1.7e-12 75.5 63 68.3
Ciclev10029760m.g Citrus clementina HOM05D001568 ORTHO05D004404 1.7e-12 75.5 61 70.5
Hma1.2p1_0661F.1_g198120 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 1.7e-12 75.5 64 68.8
Sed0007286 Sechium edule HOM05D001568 ORTHO05D004404 1.7e-12 75.5 65 69.2
Duzib052G0823 Durio zibethinus HOM05D001568 ORTHO05D004404 2.2e-12 75.1 63 65.1
Duzib132G0295 Durio zibethinus HOM05D001568 ORTHO05D004404 2.2e-12 75.1 64 68.8
Prupe.8G149100 Prunus persica HOM05D001568 ORTHO05D004404 2.2e-12 75.1 61 72.1
Gorai.005G230000 Gossypium raimondii HOM05D001568 ORTHO05D004404 2.9e-12 74.7 64 70.3
Cc00_g17980 Coffea canephora HOM05D001568 ORTHO05D004404 5.0e-12 73.9 65 66.2
Gohir.A13G047600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 5.0e-12 73.9 65 67.7
Gohir.D13G045900 Gossypium hirsutum HOM05D001568 ORTHO05D004404 5.0e-12 73.9 65 67.7
Aqoxy6G02530 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 6.5e-12 73.6 62 64.5
Atru.chr5.2306 Acer truncatum HOM05D001568 ORTHO05D004404 8.4e-12 73.2 65 67.7
Gorai.013G051400 Gossypium raimondii HOM05D001568 ORTHO05D004404 8.4e-12 73.2 65 66.2
Migut.B00459 Erythranthe guttata HOM05D001568 ORTHO05D004404 1.4e-11 72.4 65 61.5
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 1.9e-11 72.0 66 63.6
RhsimUnG0183600 Rhododendron simsii HOM05D001568 ORTHO05D004404 1.9e-11 72.0 66 63.6
SalBow6G5155 Salvia bowleyana HOM05D001568 ORTHO05D004404 2.5e-11 71.6 60 65.0
SHI05029 Sapria himalayana HOM05D001568 ORTHO05D004404 5.5e-11 70.5 63 60.3
AUR62027022 Chenopodium quinoa HOM05D001568 ORTHO05D004404 7.2e-11 70.1 66 62.1
Lsat_1_v5_gn_9_113420 Lactuca sativa HOM05D001568 ORTHO05D004404 2.7e-10 68.2 60 63.3
AUR62030863 Chenopodium quinoa HOM05D001568 ORTHO05D004404 7.9e-10 66.6 67 61.2
PGR142G4268 Punica granatum HOM05D001568 ORTHO05D004404 7.9e-10 66.6 63 61.9
Actinidia27997 Actinidia chinensis HOM05D001568 ORTHO05D004404 2.3e-09 65.1 64 59.4
Actinidia34354 Actinidia chinensis HOM05D001568 ORTHO05D004404 3.3e-08 61.2 59 59.3
Lj1g0010962 Lotus japonicus HOM05D001568 ORTHO05D004404 3.3e-08 61.2 64 59.4
Aqoxy1G00264 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 4.3e-08 60.8 60 50.0
Aqoxy335s003 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 4.3e-08 60.8 60 50.0
DCAR_021945 Daucus carota HOM05D001568 ORTHO05D004404 7.4e-08 60.1 68 61.8
Psat0s6663g0040 Pisum sativum HOM05D001568 ORTHO05D004404 9.7e-08 59.7 66 53.0
Sc08g0004350 Simmondsia chinensis HOM05D001568 ORTHO05D004404 2.8e-07 58.2 71 50.7
TPR.G8320 Trifolium pratense HOM05D001568 ORTHO05D004404 8.2e-07 56.6 59 57.6
EL10Ac9g22180 Beta vulgaris HOM05D001568 ORTHO05D004404 1.4e-06 55.8 76 51.3
EL10Ac9g22181 Beta vulgaris HOM05D001568 ORTHO05D004404 1.4e-06 55.8 62 58.1
Glyma.01G241700 Glycine max HOM05D001568 ORTHO05D004404 1.4e-06 55.8 56 60.7
Medtr5g005330 Medicago truncatula HOM05D001568 ORTHO05D004404 1.4e-06 55.8 59 59.3
Prupe.3G242600 Prunus persica HOM05D001568 ORTHO05D004404 1.8e-06 55.5 62 54.8
Lalb_Chr02g0144911 Lupinus albus HOM05D001568 ORTHO05D004404 2.4e-06 55.1 61 50.8
Manes.02G064800 Manihot esculenta HOM05D001568 ORTHO05D004404 2.4e-06 55.1 58 58.6
Nitab4.5_0010145g0040 Nicotiana tabacum HOM05D001568 ORTHO05D004404 4.1e-06 54.3 52 61.5
Phvul.002G051000 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 9.0e-06 53.1 52 61.5


User provided reference genes

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