Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G19615 Arabidopsis thaliana HOM05D007107 ORTHO05D009198 2.0e-46 188.7 94 100.0
AL3G33050 Arabidopsis lyrata HOM05D007107 ORTHO05D009198 8.7e-42 173.3 94 92.6
Carub.0003s1948 Capsella rubella HOM05D007107 ORTHO05D009198 1.4e-36 156.0 94 84.0
Thhalv10021824m.g Eutrema salsugineum HOM05D007107 ORTHO05D009198 6.0e-35 150.6 92 79.3
BcaC09g48926 Brassica carinata HOM05D007107 ORTHO05D009198 6.7e-34 147.1 93 81.7
C01p44500 Brassica napus HOM05D007107 ORTHO05D009198 6.7e-34 147.1 93 81.7
BolC1t04415H Brassica oleracea HOM05D007107 ORTHO05D009198 6.7e-34 147.1 93 81.7
BcaB04g20690 Brassica carinata HOM05D007107 ORTHO05D009198 6.2e-32 140.6 92 77.2
A01p35080 Brassica napus HOM05D007107 ORTHO05D009198 6.2e-32 140.6 93 77.4
BraA01t03589Z Brassica rapa HOM05D007107 ORTHO05D009198 6.2e-32 140.6 93 77.4
CARHR095070 Cardamine hirsuta HOM05D007107 ORTHO05D009198 4.0e-31 137.9 96 76.0
BraA03t13287Z Brassica rapa HOM05D007107 ORTHO05D009198 5.3e-31 137.5 93 77.4
A03p41330 Brassica napus HOM05D007107 ORTHO05D009198 2.0e-30 135.6 93 76.3
BcaC01g03614 Brassica carinata HOM05D007107 ORTHO05D009198 6.4e-29 130.6 93 74.2
C03p50490 Brassica napus HOM05D007107 ORTHO05D009198 6.4e-29 130.6 93 74.2
BolC3t17339H Brassica oleracea HOM05D007107 ORTHO05D009198 2.1e-27 125.6 94 72.3
BcaB04g19054 Brassica carinata HOM05D007107 ORTHO05D009198 1.1e-25 119.8 94 72.3
C05p45210 Brassica napus HOM05D007107 ORTHO05D009198 1.3e-24 116.3 89 67.4
BcaB06g26031 Brassica carinata HOM05D007107 ORTHO05D009198 7.1e-20 100.5 92 62.0
BcaC05g28441 Brassica carinata HOM05D007107 ORTHO05D009198 1.5e-14 82.8 67 65.7
THA.LOC104826494 Tarenaya hassleriana HOM05D007107 ORTHO05D009198 2.0e-14 82.4 92 54.3
Gohir.A13G046600 Gossypium hirsutum HOM05D007107 ORTHO05D009198 2.9e-13 78.6 72 61.1
Duzib132G0703 Durio zibethinus HOM05D007107 ORTHO05D009198 1.1e-12 76.6 84 56.0
Thecc.02G116600 Theobroma cacao HOM05D007107 ORTHO05D009198 1.1e-12 76.6 81 56.8
Haze_10225 Corylus avellana HOM05D007107 ORTHO05D009198 7.2e-12 73.9 93 51.6
Gohir.D13G042600 Gossypium hirsutum HOM05D007107 ORTHO05D009198 7.2e-12 73.9 86 54.7
Gorai.013G050500 Gossypium raimondii HOM05D007107 ORTHO05D009198 7.2e-12 73.9 86 54.7
Nn5g30571 Nelumbo nucifera HOM05D007107 ORTHO05D009198 7.2e-12 73.9 75 57.3
Potri.001G294800 Populus trichocarpa HOM05D007107 ORTHO05D009198 7.2e-12 73.9 61 68.9
Cfa004630 Carpinus fangiana HOM05D007107 ORTHO05D009198 1.6e-11 72.8 93 52.7
Duzib248G0453 Durio zibethinus HOM05D000446 ORTHO05D000321 2.7e-11 72.0 72 56.9
Duzib248G0083 Durio zibethinus HOM05D007107 ORTHO05D009198 3.6e-11 71.6 72 56.9
Atru.chr5.2359 Acer truncatum HOM05D007107 ORTHO05D009198 2.3e-10 68.9 80 53.8
Gohir.D12G020100 Gossypium hirsutum HOM05D007107 ORTHO05D009198 2.3e-10 68.9 86 54.7
Gorai.008G020500 Gossypium raimondii HOM05D007107 ORTHO05D009198 2.3e-10 68.9 86 54.7
TAR376G0510 Trochodendron aralioides HOM05D007107 ORTHO05D009198 3.0e-10 68.6 59 64.4
COL.COLO4_32518 Corchorus olitorius HOM05D007107 ORTHO05D009198 3.9e-10 68.2 76 55.3
Nitab4.5_0001105g0070 Nicotiana tabacum HOM05D007107 ORTHO05D009198 3.9e-10 68.2 93 44.1
CiPaw.05G017500 Carya illinoinensis HOM05D007107 ORTHO05D009198 8.8e-10 67.0 89 51.7
Ciclev10029615m.g Citrus clementina HOM05D007107 ORTHO05D009198 8.8e-10 67.0 81 53.1
Oeu010443.1 Olea europaea HOM05D007107 ORTHO05D009198 8.8e-10 67.0 74 54.1
Gohir.A12G019900 Gossypium hirsutum HOM05D007107 ORTHO05D009198 1.1e-09 66.6 86 53.5
Nitab4.5_0008075g0020 Nicotiana tabacum HOM05D007107 ORTHO05D009198 1.1e-09 66.6 66 53.0
FAN15G2005 Fragaria x ananassa HOM05D007107 ORTHO05D025431 1.5e-09 66.2 72 51.4
Prupe.8G144000 Prunus persica HOM05D007107 ORTHO05D009198 1.5e-09 66.2 91 50.5
CsaV3_4G000330 Cucumis sativus L. HOM05D007107 ORTHO05D009198 2.0e-09 65.9 73 58.9
Cpa.g.sc106.53 Carica papaya HOM05D007107 ORTHO05D009198 2.5e-09 65.5 74 55.4
Peaxi162Scf00016g02820 Petunia axillaris HOM05D007107 ORTHO05D009198 3.3e-09 65.1 70 51.4
RcHm_v2.0_Chr6g0253681 Rosa chinensis HOM05D007107 ORTHO05D009198 3.3e-09 65.1 72 51.4
Glyma.10G257200 Glycine max HOM05D007107 ORTHO05D009198 4.3e-09 64.7 63 61.9
Glyma.20G134000 Glycine max HOM05D007107 ORTHO05D009198 4.3e-09 64.7 63 61.9
TAR628G1630 Trochodendron aralioides HOM05D007107 ORTHO05D009198 4.3e-09 64.7 84 50.0
Lalb_Chr06g0165131 Lupinus albus HOM05D007107 ORTHO05D009198 5.7e-09 64.3 75 56.0
MD10G1105100 Malus domestica HOM05D007107 ORTHO05D009198 5.7e-09 64.3 64 57.8
Aqoxy5G00877 Aquilegia oxysepala HOM05D007107 ORTHO05D009198 7.4e-09 63.9 73 52.1
CiPaw.06G165600 Carya illinoinensis HOM05D007107 ORTHO05D009198 7.4e-09 63.9 93 44.1
MELO3C018001.2 Cucumis melo HOM05D007107 ORTHO05D009198 7.4e-09 63.9 73 57.5
Solyc01g107090.2 Solanum lycopersicum HOM05D007107 ORTHO05D009198 7.4e-09 63.9 63 54.0
Solyc01g107100.3 Solanum lycopersicum HOM05D007107 ORTHO05D009198 7.4e-09 63.9 63 54.0
Sopen01g049360 Solanum pennellii HOM05D007107 ORTHO05D009198 7.4e-09 63.9 63 54.0
Hma1.2p1_1773F.1_g301790 Hydrangea macrophylla HOM05D007107 ORTHO05D009198 9.7e-09 63.5 83 50.6
FvH4_2g04290 Fragaria vesca HOM05D007107 ORTHO05D009198 1.3e-08 63.2 72 50.0
FAN24G0068 Fragaria x ananassa HOM05D007107 ORTHO05D009198 1.3e-08 63.2 72 50.0
Sopen01g049370 Solanum pennellii HOM05D007107 ORTHO05D009198 1.3e-08 63.2 63 54.0
Aa31LG8G6390 Aethionema arabicum HOM05D007107 ORTHO05D009198 2.2e-08 62.4 68 50.0
CSS0046981 Camellia sinensis var. sinensis HOM05D007107 ORTHO05D009198 4.8e-08 61.2 73 50.7
ClCG10G010430 Citrullus lanatus HOM05D007107 ORTHO05D009198 6.3e-08 60.8 88 48.9
Phvul.007G045200 Phaseolus vulgaris HOM05D007107 ORTHO05D009198 6.3e-08 60.8 63 55.6
Manes.07G058800 Manihot esculenta HOM05D007107 ORTHO05D009198 8.2e-08 60.5 72 52.8
Oeu009671.1 Olea europaea HOM05D007107 ORTHO05D009198 8.2e-08 60.5 72 51.4
Lj5g0011883 Lotus japonicus HOM05D007107 ORTHO05D009198 1.1e-07 60.1 65 55.4
RcHm_v2.0_Chr6g0253721 Rosa chinensis HOM05D007107 ORTHO05D009198 1.1e-07 60.1 73 49.3
FAN20G1224 Fragaria x ananassa HOM05D007107 ORTHO05D009198 1.8e-07 59.3 72 47.2
Lsat_1_v5_gn_9_111721 Lactuca sativa HOM05D007107 ORTHO05D009198 1.8e-07 59.3 76 47.4
PGR042G2158 Punica granatum HOM05D007107 ORTHO05D009198 1.8e-07 59.3 94 43.6
EL10Ac8g19388 Beta vulgaris HOM05D007107 ORTHO05D009198 3.1e-07 58.5 66 48.5
DCAR_001690 Daucus carota HOM05D007107 ORTHO05D009198 5.3e-07 57.8 58 56.9
TPR.G27135 Trifolium pratense HOM05D007107 ORTHO05D009198 5.3e-07 57.8 62 61.3
Cc02_g19820 Coffea canephora HOM05D007107 ORTHO05D009198 9.1e-07 57.0 91 41.8
Rhsim11G0151000 Rhododendron simsii HOM05D007107 ORTHO05D009198 9.1e-07 57.0 94 45.7
MBI16_g29126_MAGBIO Magnolia biondii HOM05D007107 ORTHO05D009198 1.2e-06 56.6 99 41.4
ECA234G2040 Erigeron canadensis HOM05D007107 ORTHO05D009198 1.5e-06 56.2 76 47.4
Psat6g214960 Pisum sativum HOM05D007107 ORTHO05D009198 1.5e-06 56.2 61 57.4
Sed0023372 Sechium edule HOM05D007107 ORTHO05D009198 1.5e-06 56.2 87 47.1
Medtr1g106215 Medicago truncatula HOM05D007107 ORTHO05D009198 2.0e-06 55.8 61 57.4
Ca_11033_v3 Cicer arietinum L. HOM05D007107 ORTHO05D009198 3.4e-06 55.1 62 56.5
Oeu011135.1 Olea europaea HOM05D007107 ORTHO05D009198 3.4e-06 55.1 60 56.7
Ah.09g231830 Amaranthus hybridus HOM05D007107 ORTHO05D009198 4.5e-06 54.7 66 48.5
Lsat_1_v5_gn_5_114201 Lactuca sativa HOM05D007107 ORTHO05D009198 7.7e-06 53.9 88 43.2


User provided reference genes

Program Settings