Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G19490 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 0.0e+00 1095.9 577 100.0
AL3G32890 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 8.1e-308 1059.7 577 97.1
Carub.0003s1929 Capsella rubella HOM05D004179 ORTHO05D005248 8.7e-302 1039.6 578 95.5
Thhalv10020369m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 1.3e-294 1015.8 581 91.9
CARHR094910 Cardamine hirsuta HOM05D004179 ORTHO05D005248 3.0e-294 1014.6 584 93.2
BolC5t33281H Brassica oleracea HOM05D004179 ORTHO05D005248 6.3e-292 1006.9 584 90.1
C05p45560 Brassica napus HOM05D004179 ORTHO05D005248 4.1e-291 1004.2 584 89.7
A05p30130 Brassica napus HOM05D004179 ORTHO05D005248 1.2e-290 1002.7 580 90.7
BraA05t21853Z Brassica rapa HOM05D004179 ORTHO05D005248 5.9e-290 1000.3 580 90.5
BcaB06g26008 Brassica carinata HOM05D004179 ORTHO05D005248 4.2e-288 994.2 587 89.4
Sp3g17540 Schrenkiella parvula HOM05D004179 ORTHO05D005248 5.7e-285 983.8 584 89.9
A03p41230 Brassica napus HOM05D004179 ORTHO05D005248 2.0e-282 975.3 583 88.2
BolC3t17326H Brassica oleracea HOM05D004179 ORTHO05D005248 7.7e-282 973.4 584 88.0
BraA03t13276Z Brassica rapa HOM05D004179 ORTHO05D005248 2.9e-281 971.5 584 87.5
BcaC01g03629 Brassica carinata HOM05D004179 ORTHO05D005248 8.5e-281 969.9 583 87.7
C03p50340 Brassica napus HOM05D004179 ORTHO05D005248 2.5e-280 968.4 583 87.5
BcaB04g19041 Brassica carinata HOM05D004179 ORTHO05D005248 9.4e-280 966.5 584 87.8
Aa31LG8G6240 Aethionema arabicum HOM05D004179 ORTHO05D005248 7.2e-272 940.3 593 84.5
THA.LOC104812909 Tarenaya hassleriana HOM05D004179 ORTHO05D005248 2.9e-265 918.3 585 83.9
Haze_10162 Corylus avellana HOM05D004179 ORTHO05D005248 4.8e-252 874.4 602 78.6
Ciclev10028086m.g Citrus clementina HOM05D004179 ORTHO05D005248 2.4e-251 872.1 584 79.6
Prupe.8G134200 Prunus persica HOM05D004179 ORTHO05D005248 5.4e-251 870.9 587 80.1
Hma1.2p1_0796F.1_g219140 Hydrangea macrophylla HOM05D004179 ORTHO05D005248 7.7e-250 867.1 575 81.2
Cfa004570 Carpinus fangiana HOM05D004179 ORTHO05D005248 1.0e-249 866.7 586 78.8
Lj5A213T83 Lonicera japonica HOM05D004179 ORTHO05D005248 1.7e-249 865.9 535 85.2
TWI79G0140 Tripterygium wilfordii HOM05D004179 ORTHO05D005248 2.3e-249 865.5 584 79.1
PGR042G2277 Punica granatum HOM05D004179 ORTHO05D005248 3.8e-249 864.8 537 84.4
AUR62039105 Chenopodium quinoa HOM05D004179 ORTHO05D005248 1.9e-248 862.4 575 79.1
Manes.07G069700 Manihot esculenta HOM05D004179 ORTHO05D005248 1.9e-248 862.4 584 78.4
FvH4_2g05320 Fragaria vesca HOM05D004179 ORTHO05D005248 2.5e-248 862.1 584 78.4
AUR62010284 Chenopodium quinoa HOM05D004179 ORTHO05D005248 1.2e-247 859.8 576 78.8
FAN15G2578 Fragaria x ananassa HOM05D004179 ORTHO05D005248 2.1e-247 859.0 582 78.5
CANSAT25G1226 Cannabis sativa HOM05D004179 ORTHO05D005248 8.0e-247 857.1 575 78.3
CANSAT25G3047 Cannabis sativa HOM05D004179 ORTHO05D005248 8.0e-247 857.1 575 78.3
SGA_v2.0_scaffold225G43075 Striga asiatica HOM05D004179 ORTHO05D005248 2.3e-246 855.5 555 82.7
FAN20G2197 Fragaria x ananassa HOM05D004179 ORTHO05D005248 4.0e-246 854.7 582 78.2
Medtr1g107485 Medicago truncatula HOM05D004179 ORTHO05D005248 6.8e-246 854.0 582 78.5
Nn5g30409 Nelumbo nucifera HOM05D004179 ORTHO05D005248 1.2e-245 853.2 575 79.3
Lj5g0015320 Lotus japonicus HOM05D004179 ORTHO05D005248 4.4e-245 851.3 578 78.4
Ca_11083_v3 Cicer arietinum L. HOM05D004179 ORTHO05D005248 9.8e-245 850.1 579 78.4
Solyc11g044540.2 Solanum lycopersicum HOM05D004179 ORTHO05D005248 9.8e-245 850.1 521 85.6
Sopen11g020160 Solanum pennellii HOM05D004179 ORTHO05D005248 9.8e-245 850.1 521 85.6
PGSC0003DMG400022932 Solanum tuberosum HOM05D004179 ORTHO05D005248 9.8e-245 850.1 521 86.0
ClCG05G010240 Citrullus lanatus HOM05D004179 ORTHO05D005248 1.7e-244 849.4 588 76.5
Gohir.D02G207400 Gossypium hirsutum HOM05D004179 ORTHO05D005248 1.7e-244 849.4 582 78.2
Gohir.A03G186600 Gossypium hirsutum HOM05D004179 ORTHO05D005248 2.8e-244 848.6 582 77.8
Gorai.005G235300 Gossypium raimondii HOM05D004179 ORTHO05D005248 4.9e-244 847.8 581 78.0
Eucgr.G01360 Eucalyptus grandis HOM05D004179 ORTHO05D005248 6.3e-244 847.4 589 77.6
CAN.G621.5 Capsicum annuum HOM05D004179 ORTHO05D005248 1.4e-243 846.3 577 79.4
Potri.001G301000 Populus trichocarpa HOM05D004179 ORTHO05D005248 1.8e-243 845.9 588 76.9
GSVIVG01003166001 Vitis vinifera HOM05D004179 ORTHO05D005248 2.4e-243 845.5 579 78.8
Potri.009G096700 Populus trichocarpa HOM05D004179 ORTHO05D005248 3.1e-243 845.1 590 77.3
TAR628G1050 Trochodendron aralioides HOM05D004179 ORTHO05D005248 4.1e-243 844.7 590 77.1
Sed0014414 Sechium edule HOM05D004179 ORTHO05D005248 1.6e-242 842.8 587 76.7
Oeu037243.1 Olea europaea HOM05D004179 ORTHO05D005248 2.7e-242 842.0 549 82.0
Psat6g219600 Pisum sativum HOM05D004179 ORTHO05D005248 2.7e-242 842.0 581 76.8
Peaxi162Scf00152g00232 Petunia axillaris HOM05D004179 ORTHO05D005248 4.5e-242 841.3 493 88.0
RcHm_v2.0_Chr6g0255511 Rosa chinensis HOM05D004179 ORTHO05D005248 4.5e-242 841.3 586 76.6
Migut.B00382 Erythranthe guttata HOM05D004179 ORTHO05D005248 7.8e-242 840.5 529 83.2
SalBow6G5260 Salvia bowleyana HOM05D004179 ORTHO05D005248 1.0e-241 840.1 501 86.2
Rhsim05G0087800 Rhododendron simsii HOM05D004179 ORTHO05D005248 2.9e-241 838.6 566 79.9
Hund06333 Selenicereus undatus HOM05D004179 ORTHO05D005248 1.1e-240 836.6 563 78.3
arahy.Tifrunner.gnm1.ann1.T2YEM3 Arachis hypogaea HOM05D004179 ORTHO05D005248 3.3e-240 835.1 577 77.8
arahy.Tifrunner.gnm1.ann1.W9R5L5 Arachis hypogaea HOM05D004179 ORTHO05D005248 4.3e-240 834.7 577 77.8
CiPaw.05G010800 Carya illinoinensis HOM05D004179 ORTHO05D005248 4.3e-240 834.7 540 82.0
Lalb_Chr06g0165491 Lupinus albus HOM05D004179 ORTHO05D005248 4.3e-240 834.7 595 74.5
Lsat_1_v5_gn_7_86320 Lactuca sativa HOM05D004179 ORTHO05D005248 1.2e-239 833.2 537 81.8
MSTRG.20181 Avicennia marina HOM05D004179 ORTHO05D005248 1.6e-239 832.8 525 82.7
EL10Ac9g22290 Beta vulgaris HOM05D004179 ORTHO05D005248 2.8e-239 832.0 567 78.0
ECA236G2359 Erigeron canadensis HOM05D004179 ORTHO05D005248 4.7e-239 831.2 534 81.8
QL11p033970 Quercus lobata HOM05D004179 ORTHO05D005248 4.7e-239 831.2 546 81.1
TPR.G13858 Trifolium pratense HOM05D004179 ORTHO05D005248 4.7e-239 831.2 591 75.8
TAR376G0033 Trochodendron aralioides HOM05D004179 ORTHO05D005248 4.7e-239 831.2 585 76.6
Thecc.02G107000 Theobroma cacao HOM05D004179 ORTHO05D005248 6.1e-239 830.9 562 79.5
Oeu044290.1 Olea europaea HOM05D004179 ORTHO05D005248 1.4e-238 829.7 569 77.7
PSO541G5343 Papaver somniferum HOM05D004179 ORTHO05D005248 1.4e-238 829.7 586 76.1
Sabra09G0074300 Salix brachista HOM05D004179 ORTHO05D005248 4.0e-238 828.2 624 72.3
Aqoxy6G02887 Aquilegia oxysepala HOM05D004179 ORTHO05D005248 6.8e-238 827.4 524 81.7
Cpa.g.sc106.85 Carica papaya HOM05D004179 ORTHO05D005248 2.0e-237 825.9 541 81.1
COL.COLO4_32603 Corchorus olitorius HOM05D004179 ORTHO05D005248 2.6e-237 825.5 558 78.7
HanXRQChr16g0510101 Helianthus annuus HOM05D004179 ORTHO05D005248 1.3e-236 823.2 533 80.5
Atru.chr5.2582 Acer truncatum HOM05D004179 ORTHO05D005248 3.7e-236 821.6 589 74.9
DCAR_001640 Daucus carota HOM05D004179 ORTHO05D005248 1.4e-235 819.7 571 77.4
Ah.01g018160 Amaranthus hybridus HOM05D004179 ORTHO05D005248 2.4e-235 818.9 560 76.4
PSO675G3501 Papaver somniferum HOM05D004179 ORTHO05D005248 2.4e-235 818.9 586 75.1
Cc02_g19190 Coffea canephora HOM05D004179 ORTHO05D005248 2.0e-234 815.8 582 77.1
unitig_37.g12803 Utricularia gibba HOM05D004179 ORTHO05D005248 2.7e-234 815.5 531 80.4
MSTRG.5346 Avicennia marina HOM05D004179 ORTHO05D005248 7.8e-234 813.9 528 81.4
HanXRQChr04g0128091 Helianthus annuus HOM05D004179 ORTHO05D005248 1.7e-233 812.8 503 84.1
ATR0691G115 Amborella trichopoda HOM05D004179 ORTHO05D005248 2.3e-233 812.4 582 74.7
Phvul.007G039000 Phaseolus vulgaris HOM05D004179 ORTHO05D005248 1.5e-232 809.7 583 74.4
VMungo0720G2067 Vigna mungo HOM05D004179 ORTHO05D005248 7.3e-232 807.4 580 73.8
vmacro19521 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 6.2e-231 804.3 528 80.7
FAN24G2682 Fragaria x ananassa HOM05D004179 ORTHO05D005248 1.4e-230 803.1 618 72.0
Actinidia17883 Actinidia chinensis HOM05D004179 ORTHO05D005248 6.8e-230 800.8 495 85.7
Sc17g0003000 Simmondsia chinensis HOM05D004179 ORTHO05D005248 1.9e-227 792.7 487 84.8
RcHm_v2.0_Chr6g0255521 Rosa chinensis HOM05D004179 ORTHO05D005248 4.6e-226 788.1 506 81.2
HPP92_004767 Vanilla planifolia HOM05D004179 ORTHO05D005248 3.6e-223 778.5 539 75.7
RcHm_v2.0_Chr6g0255491 Rosa chinensis HOM05D004179 ORTHO05D005248 7.1e-219 764.2 464 84.7
Duzib052G0638 Durio zibethinus HOM05D004179 ORTHO05D005248 2.7e-218 762.3 493 81.1
Dinv15758 Davidia involucrata HOM05D004179 ORTHO05D005248 1.1e-216 756.9 435 89.4
Zm00001eb307330 Zea mays HOM05D004179 ORTHO05D005248 2.1e-215 752.7 464 81.7
SEGI_32792 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 1.5e-213 746.5 569 68.9
BcaC05g28472 Brassica carinata HOM05D004179 ORTHO05D005248 1.1e-211 740.3 584 70.7
QL11p034034 Quercus lobata HOM05D004179 ORTHO05D005248 5.4e-211 738.0 437 86.7
MELO3C019541.2 Cucumis melo HOM05D004179 ORTHO05D005248 7.1e-211 737.6 741 58.7
Duzib132G1089 Durio zibethinus HOM05D004179 ORTHO05D005248 2.7e-210 735.7 481 80.2
QL11p034002 Quercus lobata HOM05D004179 ORTHO05D005248 6.2e-207 724.5 437 85.1
Mapoly0030s0013 Marchantia polymorpha HOM05D004179 ORTHO05D005248 2.4e-206 722.6 507 72.2
AagrBONN_evm.TU.Sc2ySwM_117.488 Anthoceros agrestis HOM05D004179 ORTHO05D005248 5.2e-206 721.5 499 73.5
Hund00144 Selenicereus undatus HOM05D004179 ORTHO05D005248 2.6e-205 719.2 568 69.7
Duzib052G0741 Durio zibethinus HOM05D004179 ORTHO05D005248 6.4e-204 714.5 585 68.7
Rhsim05G0087900 Rhododendron simsii HOM05D004179 ORTHO05D005248 3.2e-203 712.2 435 85.5
Pp3c12_4070 Physcomitrium patens HOM05D004179 ORTHO05D005248 3.2e-195 685.6 503 70.0
Pp3c4_21490 Physcomitrium patens HOM05D004179 ORTHO05D005248 1.2e-194 683.7 486 71.2
Nitab4.5_0001596g0010 Nicotiana tabacum HOM05D004179 ORTHO05D005248 5.6e-192 674.9 396 89.1
Glyma.20G129500 Glycine max HOM05D004179 ORTHO05D005248 1.4e-190 670.2 439 79.0
Duzib132G1182 Durio zibethinus HOM05D004179 ORTHO05D005248 2.9e-188 662.5 397 85.6
Os09g0109800 Oryza sativa ssp. japonica HOM05D004179 ORTHO05D005248 1.0e-185 654.1 423 79.7
Thhalv10012248m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 1.8e-185 653.3 427 80.3
AT1G49810 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 3.7e-183 645.6 418 80.6
Ciclev10030164m.g Citrus clementina HOM05D004179 ORTHO05D005248 2.4e-182 642.9 389 85.6
SMO347G0195 Selaginella moellendorffii HOM05D004179 ORTHO05D005248 1.0e-180 637.5 424 76.2
AL1G57290 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 1.3e-180 637.1 423 78.3
VMungo0720G0258 Vigna mungo HOM05D004179 ORTHO05D005248 5.5e-179 631.7 420 77.4
CSS0041442 Camellia sinensis var. sinensis HOM05D004179 ORTHO05D005248 3.8e-172 609.0 455 74.5
MD05G1088200 Malus domestica HOM05D004179 ORTHO05D005248 7.2e-163 578.2 468 69.0
BcaB06g26006 Brassica carinata HOM05D004179 ORTHO05D005248 3.9e-161 572.4 316 93.0
vmacro23441 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 7.7e-149 531.6 443 68.2
CDE04G0108 Ceratophyllum demersum HOM05D004179 ORTHO05D005248 2.5e-147 526.6 586 56.0
CsaV3_3G018250 Cucumis sativus L. HOM05D004179 ORTHO05D005248 2.3e-145 520.0 387 73.4
Carub.0001s3900 Capsella rubella HOM05D004179 ORTHO05D005248 1.8e-137 493.8 352 73.3
CiPaw.06G169900 Carya illinoinensis HOM05D004179 ORTHO05D005248 3.4e-136 489.6 299 84.6
Eucgr.H03221 Eucalyptus grandis HOM05D004179 ORTHO05D005248 5.7e-136 488.8 452 63.9
MBI16_g34668_MAGBIO Magnolia biondii HOM05D004179 ORTHO05D005248 2.0e-125 453.8 269 86.6
Dinv42185 Davidia involucrata HOM05D004179 ORTHO05D005248 6.6e-124 448.7 334 74.6
Nitab4.5_0001539g0020 Nicotiana tabacum HOM05D004179 ORTHO05D005248 2.5e-123 446.8 259 88.8
Cre09.g395288 Chlamydomonas reinhardtii HOM05D004179 ORTHO05D005248 1.4e-121 441.0 518 47.5
RcHm_v2.0_Chr6g0255461 Rosa chinensis HOM05D004179 ORTHO05D005248 2.6e-120 436.8 283 79.9
Actinidia27968 Actinidia chinensis HOM05D004179 ORTHO05D005248 2.1e-85 320.9 484 45.7
SEGI_35862 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 1.7e-79 301.2 213 70.9
Glyma.10G261350 Glycine max HOM05D004179 ORTHO05D005248 3.0e-76 290.4 186 79.6
Sabra16G0189200 Salix brachista HOM05D004179 ORTHO05D005248 6.7e-76 289.3 579 39.7
CBR_g29563 Chara braunii HOM05D004179 ORTHO05D005248 1.8e-68 264.6 308 50.6
Glyma.20G127600 Glycine max HOM05D004179 ORTHO05D005248 2.0e-64 251.1 194 70.1
HanXRQChr02g0055551 Helianthus annuus HOM05D004179 ORTHO05D005248 1.9e-54 218.0 142 78.9
CBR_g39138 Chara braunii HOM05D004179 ORTHO05D005248 1.8e-52 211.5 193 57.5
SEGI_39751 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 2.3e-52 211.1 200 59.0
RcHm_v2.0_Chr6g0255471 Rosa chinensis HOM05D004179 ORTHO05D005248 6.9e-49 199.5 118 86.4
TPR.G27121 Trifolium pratense HOM05D004179 ORTHO05D005248 4.5e-48 196.8 126 81.7
Hund09393 Selenicereus undatus HOM05D004179 ORTHO05D005248 7.4e-35 152.9 171 55.0
Hund13342 Selenicereus undatus HOM05D004179 ORTHO05D005248 1.3e-34 152.1 182 51.1
SEGI_40595 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 7.0e-33 146.4 94 72.3
BcaB01g01792 Brassica carinata HOM05D002587 ORTHO05D002778 2.2e-31 141.4 101 77.2
arahy.Tifrunner.gnm1.ann1.38ITRC Arachis hypogaea HOM05D000846 ORTHO05D021490 3.8e-31 140.6 109 72.5
HanXRQChr02g0055561 Helianthus annuus HOM05D004179 ORTHO05D021490 1.3e-26 125.6 78 83.3
Manes.04G059624 Manihot esculenta HOM05D004179 ORTHO05D021490 1.4e-25 122.1 69 89.9
PSO832G1539 Papaver somniferum HOM05D000003 ORTHO05D000004 2.7e-24 117.9 102 61.8
CBR_g29562 Chara braunii HOM05D004179 ORTHO05D005248 3.2e-22 110.9 71 73.2
TPR.G23074 Trifolium pratense HOM05D001509 ORTHO05D001361 4.2e-22 110.5 79 70.9
MD05G1088300 Malus domestica HOM05D004179 ORTHO05D005248 9.4e-22 109.4 70 80.0
arahy.Tifrunner.gnm1.ann1.38IWEY Arachis hypogaea HOM05D004179 ORTHO05D005248 9.8e-19 99.4 61 78.7
arahy.Tifrunner.gnm1.ann1.JR6IQW Arachis hypogaea HOM05D004179 ORTHO05D021490 1.9e-14 85.1 53 83.0
CARHR039870 Cardamine hirsuta HOM05D004179 ORTHO05D021490 5.5e-14 83.6 58 75.9
BcaC02g11330 Brassica carinata HOM05D004179 ORTHO05D092784 1.4e-12 79.0 149 36.2
SMO199G0121 Selaginella moellendorffii HOM05D004179 ORTHO05D374621 9.2e-09 66.2 93 47.3
HanXRQChr04g0106691 Helianthus annuus HOM05D004179 ORTHO05D020814 1.6e-08 65.5 48 66.7
Hund25982 Selenicereus undatus HOM05D004179 ORTHO05D021490 4.5e-08 63.9 39 82.1
VMungo1215G0907 Vigna mungo HOM05D004179 ORTHO05D020814 9.5e-06 56.2 50 58.0


User provided reference genes

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