Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G19220 Arabidopsis thaliana HOM05D007022 ORTHO05D008868 1.4e-107 392.9 188 100.0
AL3G32600 Arabidopsis lyrata HOM05D007022 ORTHO05D008868 1.5e-106 389.4 188 99.5
Carub.0003s1905 Capsella rubella HOM05D007022 ORTHO05D008868 7.7e-98 360.5 188 91.5
Thhalv10021599m.g Eutrema salsugineum HOM05D007022 ORTHO05D008868 1.0e-97 360.1 188 91.5
Sp3g17290 Schrenkiella parvula HOM05D007022 ORTHO05D008868 8.5e-97 357.1 188 90.4
A05p30420 Brassica napus HOM05D007022 ORTHO05D008868 2.8e-92 342.0 189 88.4
BcaC05g28522 Brassica carinata HOM05D007022 ORTHO05D008868 8.2e-92 340.5 188 87.8
BraA05t21880Z Brassica rapa HOM05D007022 ORTHO05D008868 1.8e-91 339.3 189 87.8
Aa31LG8G6010 Aethionema arabicum HOM05D007022 ORTHO05D008868 2.4e-91 339.0 188 88.8
BolC5t33329H Brassica oleracea HOM05D007022 ORTHO05D008868 4.1e-91 338.2 188 87.8
BcaB06g25978 Brassica carinata HOM05D007022 ORTHO05D008868 6.1e-87 324.3 186 84.4
CARHR094630 Cardamine hirsuta HOM05D007022 ORTHO05D008868 5.9e-58 228.0 123 91.1
Cpa.g.sc62.15 Carica papaya HOM05D007022 ORTHO05D008868 2.8e-55 219.2 208 58.7
CiPaw.06G172800 Carya illinoinensis HOM05D007022 ORTHO05D008868 4.7e-55 218.4 199 57.3
GSVIVG01031751001 Vitis vinifera HOM05D007022 ORTHO05D008868 3.4e-53 212.2 208 55.3
Ciclev10029362m.g Citrus clementina HOM05D007022 ORTHO05D008868 4.4e-53 211.8 176 58.5
Dinv42154 Davidia involucrata HOM05D007022 ORTHO05D008868 2.2e-52 209.5 191 58.6
MBI06_g36648_MAGBIO Magnolia biondii HOM05D007022 ORTHO05D008868 2.2e-52 209.5 186 60.2
vmacro02203 Vaccinium macrocarpon HOM05D007022 ORTHO05D008868 2.2e-52 209.5 166 63.3
TAR381G0954 Trochodendron aralioides HOM05D007022 ORTHO05D008868 2.9e-52 209.1 185 56.8
QL11p035981 Quercus lobata HOM05D007022 ORTHO05D008868 3.7e-52 208.8 154 65.6
Thecc.02G100400 Theobroma cacao HOM05D007022 ORTHO05D008868 4.9e-52 208.4 190 57.4
Actinidia12953 Actinidia chinensis HOM05D007022 ORTHO05D008868 8.3e-52 207.6 173 60.7
COL.COLO4_32660 Corchorus olitorius HOM05D007022 ORTHO05D003154 3.2e-51 205.7 190 55.8
PGR042G2146 Punica granatum HOM05D007022 ORTHO05D008868 5.4e-51 204.9 191 57.1
Rhsim11G0166300 Rhododendron simsii HOM05D007022 ORTHO05D008868 5.4e-51 204.9 188 61.2
Haze_10076 Corylus avellana HOM05D007022 ORTHO05D008868 7.0e-51 204.5 217 52.5
Hma1.2p1_0370F.1_g137830 Hydrangea macrophylla HOM05D007022 ORTHO05D008868 7.0e-51 204.5 168 61.3
Nn1g04883 Nelumbo nucifera HOM05D007022 ORTHO05D008868 1.6e-50 203.4 195 55.9
Gohir.D13G038800 Gossypium hirsutum HOM05D007022 ORTHO05D008868 2.7e-50 202.6 191 56.5
Gorai.013G043500 Gossypium raimondii HOM05D007022 ORTHO05D008868 2.7e-50 202.6 191 56.5
Potri.009G102400 Populus trichocarpa HOM05D007022 ORTHO05D008868 3.5e-50 202.2 194 56.2
Manes.07G082700 Manihot esculenta HOM05D007022 ORTHO05D008868 4.6e-50 201.8 192 53.6
Solyc01g108200.3 Solanum lycopersicum HOM05D007022 ORTHO05D008868 4.6e-50 201.8 131 70.2
Sopen01g050430 Solanum pennellii HOM05D007022 ORTHO05D008868 4.6e-50 201.8 131 70.2
Gohir.A13G040100 Gossypium hirsutum HOM05D007022 ORTHO05D008868 5.9e-50 201.4 191 56.0
CDE04G2473 Ceratophyllum demersum HOM05D007022 ORTHO05D008868 1.0e-49 200.7 119 75.6
Dinv23619 Davidia involucrata HOM05D007022 ORTHO05D008868 1.3e-49 200.3 181 58.6
Migut.B00344 Erythranthe guttata HOM05D007022 ORTHO05D008868 5.0e-49 198.4 198 53.5
Nitab4.5_0002543g0040 Nicotiana tabacum HOM05D007022 ORTHO05D008868 8.6e-49 197.6 170 58.8
Nitab4.5_0007480g0010 Nicotiana tabacum HOM05D007022 ORTHO05D008868 8.6e-49 197.6 163 63.2
unitig_26.g10239 Utricularia gibba HOM05D007022 ORTHO05D008868 1.1e-48 197.2 162 61.1
THA.LOC104798819 Tarenaya hassleriana HOM05D007022 ORTHO05D008868 1.9e-48 196.4 187 58.8
MSTRG.27723 Avicennia marina HOM05D007022 ORTHO05D008868 2.5e-48 196.1 187 52.4
Nn5g30258 Nelumbo nucifera HOM05D007022 ORTHO05D008868 5.6e-48 194.9 162 61.1
Aqoxy6G01341 Aquilegia oxysepala HOM05D007022 ORTHO05D008868 9.5e-48 194.1 174 53.4
SalBow6G3975 Salvia bowleyana HOM05D007022 ORTHO05D008868 4.7e-47 191.8 208 53.4
TWI75G1380 Tripterygium wilfordii HOM05D007022 ORTHO05D008868 8.0e-47 191.0 198 53.0
SGA_v2.0_scaffold13G06591 Striga asiatica HOM05D007022 ORTHO05D008868 1.1e-46 190.7 185 51.4
Oeu007283.1 Olea europaea HOM05D007022 ORTHO05D008868 8.9e-46 187.6 189 54.0
Cc02_g18740 Coffea canephora HOM05D007022 ORTHO05D008868 1.2e-45 187.2 166 57.2
CANSAT25G3754 Cannabis sativa HOM05D007022 ORTHO05D008868 1.5e-45 186.8 196 53.6
RcHm_v2.0_Chr6g0257061 Rosa chinensis HOM05D007022 ORTHO05D008868 3.4e-45 185.7 185 54.1
Lj4g0019449 Lotus japonicus HOM05D007022 ORTHO05D008868 4.4e-45 185.3 166 59.0
FvH4_2g06130 Fragaria vesca HOM05D007022 ORTHO05D008868 7.5e-45 184.5 184 54.3
VMungo0251G0366 Vigna mungo HOM05D007022 ORTHO05D008868 9.8e-45 184.1 190 56.8
Atru.chr5.2709 Acer truncatum HOM05D007022 ORTHO05D008868 3.7e-44 182.2 174 54.0
Prupe.8G124000 Prunus persica HOM05D007022 ORTHO05D008868 8.3e-44 181.0 195 51.8
Actinidia00443 Actinidia chinensis HOM05D007022 ORTHO05D008868 1.9e-43 179.9 183 53.6
MD10G1094200 Malus domestica HOM05D007022 ORTHO05D008868 1.9e-43 179.9 178 55.6
ECA240G1411 Erigeron canadensis HOM05D007022 ORTHO05D008868 4.1e-43 178.7 190 52.1
CSS0015269 Camellia sinensis var. sinensis HOM05D007022 ORTHO05D008868 9.2e-43 177.6 194 53.1
Lj9A358T46 Lonicera japonica HOM05D007022 ORTHO05D008868 1.6e-42 176.8 164 57.3
HPP92_016383 Vanilla planifolia HOM05D002198 ORTHO05D008868 2.0e-42 176.4 109 69.7
Peaxi162Scf00016g01823 Petunia axillaris HOM05D007022 ORTHO05D008868 4.6e-42 175.3 158 57.6
FAN15G0654 Fragaria x ananassa HOM05D007022 ORTHO05D008868 7.8e-42 174.5 164 57.3
FAN24G2553 Fragaria x ananassa HOM05D007022 ORTHO05D008868 7.8e-42 174.5 165 55.8
CsaV3_3G018570 Cucumis sativus L. HOM05D007022 ORTHO05D008868 1.3e-41 173.7 145 60.0
Sed0002892 Sechium edule HOM05D007022 ORTHO05D008868 1.7e-41 173.3 145 60.0
MELO3C019509.2 Cucumis melo HOM05D007022 ORTHO05D008868 2.3e-41 172.9 146 58.9
ClCG05G010000 Citrullus lanatus HOM05D007022 ORTHO05D008868 3.0e-41 172.6 144 59.0
PSO675G2542 Papaver somniferum HOM05D007022 ORTHO05D008868 3.0e-41 172.6 107 73.8
HanXRQChr09g0251721 Helianthus annuus HOM05D007022 ORTHO05D008868 3.9e-41 172.2 106 73.6
Sopen10g021420 Solanum pennellii HOM05D007022 ORTHO05D008868 3.9e-41 172.2 97 77.3
Lsat_1_v5_gn_9_110080 Lactuca sativa HOM05D007022 ORTHO05D008868 5.0e-41 171.8 174 52.3
PSO541G2619 Papaver somniferum HOM05D007022 ORTHO05D008868 5.0e-41 171.8 107 73.8
Zm00001eb100830 Zea mays HOM05D007022 ORTHO05D008868 5.0e-41 171.8 191 49.2
Lalb_Chr16g0384701 Lupinus albus HOM05D007022 ORTHO05D008868 1.9e-40 169.9 179 50.3
Phvul.003G292600 Phaseolus vulgaris HOM05D007022 ORTHO05D008868 1.9e-40 169.9 177 54.2
FAN20G2768 Fragaria x ananassa HOM05D007022 ORTHO05D008868 2.5e-40 169.5 164 55.5
Glyma.02G132900 Glycine max HOM05D007022 ORTHO05D008868 3.3e-40 169.1 177 52.5
Glyma.07G212100 Glycine max HOM05D007022 ORTHO05D008868 7.3e-40 167.9 177 52.5
PGSC0003DMG401025892 Solanum tuberosum HOM05D007022 ORTHO05D008868 7.3e-40 167.9 87 80.5
Ca_18680_v3 Cicer arietinum L. HOM05D007022 ORTHO05D008868 4.7e-39 165.2 184 46.2
Psat7g125000 Pisum sativum HOM05D007022 ORTHO05D008868 1.1e-38 164.1 173 47.4
Sc08g0000700 Simmondsia chinensis HOM05D005091 ORTHO05D006047 2.3e-38 162.9 145 55.9
arahy.Tifrunner.gnm1.ann1.WB2CJ6 Arachis hypogaea HOM05D007022 ORTHO05D008868 5.2e-38 161.8 104 71.2
Hund00236 Selenicereus undatus HOM05D007022 ORTHO05D008868 8.9e-38 161.0 193 47.2
arahy.Tifrunner.gnm1.ann1.059Z6S Arachis hypogaea HOM05D007022 ORTHO05D008868 1.5e-37 160.2 111 66.7
TPR.G28492 Trifolium pratense HOM05D007022 ORTHO05D008868 2.6e-37 159.5 143 56.6
EL10Ac9g21683 Beta vulgaris HOM05D007022 ORTHO05D008868 4.4e-37 158.7 126 60.3
Oeu013707.1 Olea europaea HOM05D007022 ORTHO05D008868 7.5e-37 157.9 178 47.8
Ah.01g019040 Amaranthus hybridus HOM05D007022 ORTHO05D008868 4.1e-35 152.1 135 55.6
ATR0100G054 Amborella trichopoda HOM05D007022 ORTHO05D008868 1.7e-33 146.7 126 57.1
CDE03G0325 Ceratophyllum demersum HOM05D007022 ORTHO05D008868 6.6e-33 144.8 74 85.1
Os09g0458400 Oryza sativa ssp. japonica HOM05D007022 ORTHO05D008868 5.6e-32 141.7 178 44.9
CBR_g29933 Chara braunii HOM05D007022 ORTHO05D008868 1.1e-30 137.5 127 52.0
Medtr4g086255 Medicago truncatula HOM05D007022 ORTHO05D008868 1.8e-30 136.7 92 68.5
Nitab4.5_0012979g0010 Nicotiana tabacum HOM05D007022 ORTHO05D008868 2.6e-29 132.9 139 48.2
Nitab4.5_0005758g0030 Nicotiana tabacum HOM05D007022 ORTHO05D008868 9.9e-29 131.0 140 47.9
AUR62016784 Chenopodium quinoa HOM05D007022 ORTHO05D008868 1.7e-28 130.2 108 56.5
AagrBONN_evm.TU.Sc2ySwM_368.1030 Anthoceros agrestis HOM05D007022 ORTHO05D008868 6.4e-28 128.3 110 51.8
Pp3c1_42880 Physcomitrium patens HOM05D007022 ORTHO05D008868 3.9e-25 119.0 173 42.8
Mapoly0186s0009 Marchantia polymorpha HOM05D007022 ORTHO05D008868 1.5e-24 117.1 191 39.8
Pp3c2_400 Physcomitrium patens HOM05D007022 ORTHO05D008868 1.5e-24 117.1 97 54.6
SMO232G0067 Selaginella moellendorffii HOM05D007022 ORTHO05D008868 3.3e-24 115.9 96 52.1
Cfa004517 Carpinus fangiana HOM05D007022 ORTHO05D008868 3.1e-22 109.4 128 51.6
Sopen10g021450 Solanum pennellii HOM05D007022 ORTHO05D008868 2.0e-21 106.7 125 50.4
Sabra09G0078400 Salix brachista HOM05D007022 ORTHO05D008868 1.1e-19 100.9 171 40.9
SEGI_10031 Sequoiadendron giganteum HOM05D007022 ORTHO05D008868 6.6e-17 91.7 76 55.3
Rhsim11G0166200 Rhododendron simsii HOM05D007022 ORTHO05D008868 3.3e-16 89.4 69 65.2
DCAR_022028 Daucus carota HOM05D007022 ORTHO05D008868 4.3e-16 89.0 126 43.7
ECA240G0576 Erigeron canadensis HOM05D007022 ORTHO05D008868 9.6e-16 87.8 122 42.6
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 8.4e-12 74.7 110 40.9


User provided reference genes

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