Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G18715 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 1.7e-50 202.2 94 100.0
BcaB04g20754 Brassica carinata HOM05D004540 ORTHO05D004852 1.7e-37 159.1 95 77.9
CARHR094090 Cardamine hirsuta HOM05D004540 ORTHO05D004852 8.4e-37 156.8 96 78.1
A01p35740 Brassica napus HOM05D004540 ORTHO05D004852 2.4e-36 155.2 96 75.0
BraA01t03656Z Brassica rapa HOM05D004540 ORTHO05D004852 2.4e-36 155.2 96 75.0
BcaB04g19000 Brassica carinata HOM05D004540 ORTHO05D004852 5.4e-36 154.1 95 76.8
Thhalv10022275m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 5.4e-36 154.1 95 80.0
C03p49670 Brassica napus HOM05D004540 ORTHO05D004852 2.7e-35 151.8 96 78.1
BolC3t17265H Brassica oleracea HOM05D004540 ORTHO05D004852 2.7e-35 151.8 96 78.1
A03p40790 Brassica napus HOM05D004540 ORTHO05D004852 7.9e-35 150.2 96 77.1
BraA03t13237Z Brassica rapa HOM05D004540 ORTHO05D004852 7.9e-35 150.2 96 77.1
BcaC09g48828 Brassica carinata HOM05D004540 ORTHO05D004852 6.7e-34 147.1 95 72.6
C01p45480 Brassica napus HOM05D004540 ORTHO05D004852 6.7e-34 147.1 95 72.6
BolC1t04514H Brassica oleracea HOM05D004540 ORTHO05D004852 6.7e-34 147.1 95 72.6
A05p30900 Brassica napus HOM05D004540 ORTHO05D004852 3.7e-32 141.4 95 73.7
BraA05t21932Z Brassica rapa HOM05D004540 ORTHO05D004852 3.7e-32 141.4 95 73.7
BcaB06g25922 Brassica carinata HOM05D004540 ORTHO05D004852 1.5e-30 136.0 95 71.6
BcaNung06138 Brassica carinata HOM05D004540 ORTHO05D004852 1.5e-30 136.0 95 71.6
BcaC05g28580 Brassica carinata HOM05D004540 ORTHO05D004852 3.8e-29 131.3 95 70.5
C05p46830 Brassica napus HOM05D004540 ORTHO05D004852 3.8e-29 131.3 95 70.5
BolC5t33413H Brassica oleracea HOM05D004540 ORTHO05D004852 3.8e-29 131.3 95 70.5
Medtr3g095690 Medicago truncatula HOM05D004540 ORTHO05D004852 5.9e-14 80.9 73 56.2
Carub.0003s1849 Capsella rubella HOM05D004540 ORTHO05D004852 2.5e-12 75.5 35 97.1
Cpa.g.sc42.109 Carica papaya HOM05D004540 ORTHO05D004852 2.5e-12 75.5 72 50.0
Ciclev10026873m.g Citrus clementina HOM05D004540 ORTHO05D004852 3.2e-12 75.1 78 53.8
Cfa002837 Carpinus fangiana HOM05D004540 ORTHO05D004852 5.5e-12 74.3 80 52.5
Phvul.009G148100 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 7.2e-12 73.9 81 49.4
CiPaw.03G127700 Carya illinoinensis HOM05D004540 ORTHO05D004852 2.7e-11 72.0 74 48.6
Prupe.6G159700 Prunus persica HOM05D004540 ORTHO05D004852 3.6e-11 71.6 79 48.1
Thecc.01G124700 Theobroma cacao HOM05D004540 ORTHO05D004852 3.6e-11 71.6 81 49.4
Eucgr.I00231 Eucalyptus grandis HOM05D004540 ORTHO05D004852 4.6e-11 71.2 72 50.0
TPR.G18724 Trifolium pratense HOM05D004540 ORTHO05D004852 4.6e-11 71.2 75 50.7
Haze_25134 Corylus avellana HOM05D004540 ORTHO05D004852 6.1e-11 70.9 72 52.8
Gohir.A10G083507 Gossypium hirsutum HOM05D004540 ORTHO05D004852 7.9e-11 70.5 81 48.1
Manes.13G071600 Manihot esculenta HOM05D004540 ORTHO05D004852 1.0e-10 70.1 81 49.4
Gohir.D10G105766 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.8e-10 69.3 72 45.8
Gorai.011G115500 Gossypium raimondii HOM05D004540 ORTHO05D004852 1.8e-10 69.3 72 45.8
CiPaw.04G085800 Carya illinoinensis HOM05D004540 ORTHO05D004852 2.3e-10 68.9 86 47.7
Gohir.A11G055800 Gossypium hirsutum HOM05D004540 ORTHO05D004852 3.0e-10 68.6 81 49.4
Gohir.D11G059900 Gossypium hirsutum HOM05D004540 ORTHO05D004852 5.1e-10 67.8 81 49.4
Gorai.007G064600 Gossypium raimondii HOM05D004540 ORTHO05D004852 5.1e-10 67.8 81 49.4
Phvul.002G270200 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 5.1e-10 67.8 77 45.5
QL06p029800 Quercus lobata HOM05D004540 ORTHO05D004852 6.7e-10 67.4 71 47.9
Potri.005G057400 Populus trichocarpa HOM05D004540 ORTHO05D004852 1.1e-09 66.6 74 48.6
Manes.12G152100 Manihot esculenta HOM05D004540 ORTHO05D004852 1.5e-09 66.2 85 43.5
MD01G1010200 Malus domestica HOM05D004540 ORTHO05D004852 2.0e-09 65.9 86 44.2
Lalb_Chr12g0203271 Lupinus albus HOM05D004540 ORTHO05D004852 3.3e-09 65.1 73 43.8
CSS0044504 Camellia sinensis var. sinensis HOM05D004540 ORTHO05D004852 4.3e-09 64.7 70 48.6
Gohir.A05G386200 Gossypium hirsutum HOM05D004540 ORTHO05D004852 4.3e-09 64.7 75 44.0
Potri.007G110700 Populus trichocarpa HOM05D004540 ORTHO05D004852 7.4e-09 63.9 77 46.8
CARHR278640 Cardamine hirsuta HOM05D004540 ORTHO05D004852 9.7e-09 63.5 64 45.3
Gohir.D04G023300 Gossypium hirsutum HOM05D004540 ORTHO05D004852 9.7e-09 63.5 75 44.0
Gorai.012G033600 Gossypium raimondii HOM05D004540 ORTHO05D004852 9.7e-09 63.5 75 44.0
FvH4_1g23990 Fragaria vesca HOM05D004540 ORTHO05D004852 1.7e-08 62.8 91 41.8
FAN19G2513 Fragaria x ananassa HOM05D004540 ORTHO05D004852 1.7e-08 62.8 97 42.3
FAN23G3045 Fragaria x ananassa HOM05D004540 ORTHO05D004852 1.7e-08 62.8 91 41.8
Sed0025334 Sechium edule HOM05D004540 ORTHO05D004852 1.7e-08 62.8 79 41.8
AT5G64667 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 2.8e-08 62.0 67 47.8
Glyma.08G147100 Glycine max HOM05D004540 ORTHO05D004852 2.8e-08 62.0 62 48.4
BcaB02g09810 Brassica carinata HOM05D004540 ORTHO05D004852 3.7e-08 61.6 75 46.7
Thhalv10005301m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 3.7e-08 61.6 66 50.0
FAN26G2008 Fragaria x ananassa HOM05D004540 ORTHO05D004852 3.7e-08 61.6 91 40.7
Glyma.05G189500 Glycine max HOM05D004540 ORTHO05D004852 3.7e-08 61.6 62 48.4
Lalb_Chr08g0238521 Lupinus albus HOM05D004540 ORTHO05D004852 3.7e-08 61.6 77 45.5
Lj4g0001726 Lotus japonicus HOM05D004540 ORTHO05D004852 4.8e-08 61.2 68 45.6
BcaB04g19982 Brassica carinata HOM05D004540 ORTHO05D004852 8.2e-08 60.5 69 49.3
BcaC01g02698 Brassica carinata HOM05D004540 ORTHO05D004852 8.2e-08 60.5 84 41.7
C03p61500 Brassica napus HOM05D004540 ORTHO05D004852 8.2e-08 60.5 84 41.7
BolC3t18411H Brassica oleracea HOM05D004540 ORTHO05D004852 8.2e-08 60.5 84 41.7
BraA06t26083Z Brassica rapa HOM05D004540 ORTHO05D004852 8.2e-08 60.5 84 41.7
BraA09t36527Z Brassica rapa HOM05D004540 ORTHO05D004852 8.2e-08 60.5 79 41.8
MELO3C008039.2 Cucumis melo HOM05D004540 ORTHO05D004852 8.2e-08 60.5 41 61.0
CsaV3_6G041820 Cucumis sativus L. HOM05D004540 ORTHO05D004852 8.2e-08 60.5 41 61.0
Medtr8g092860 Medicago truncatula HOM05D004540 ORTHO05D004852 8.2e-08 60.5 80 42.5
Aa31LG1G17280 Aethionema arabicum HOM05D004540 ORTHO05D004852 1.1e-07 60.1 74 47.3
AL8G42080 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 1.4e-07 59.7 55 52.7
RcHm_v2.0_Chr2g0120121 Rosa chinensis HOM05D004540 ORTHO05D004852 1.4e-07 59.7 34 73.5
Carub.0008s2546 Capsella rubella HOM05D004540 ORTHO05D004852 1.8e-07 59.3 55 50.9
Lalb_Chr13g0296521 Lupinus albus HOM05D004540 ORTHO05D004852 1.8e-07 59.3 65 43.1
A06p31460 Brassica napus HOM05D004540 ORTHO05D004852 2.4e-07 58.9 86 40.7
TPR.G37334 Trifolium pratense HOM05D004540 ORTHO05D004852 2.4e-07 58.9 71 43.7
Migut.L00903 Erythranthe guttata HOM05D004540 ORTHO05D004852 3.1e-07 58.5 75 46.7
DCAR_014344 Daucus carota HOM05D004540 ORTHO05D004852 5.3e-07 57.8 92 39.1
Prupe.8G024400 Prunus persica HOM05D004540 ORTHO05D004852 5.3e-07 57.8 78 42.3
BcaC04g23300 Brassica carinata HOM05D004540 ORTHO05D004852 6.9e-07 57.4 68 45.6
C09p09950 Brassica napus HOM05D004540 ORTHO05D004852 6.9e-07 57.4 68 45.6
BolC9t53903H Brassica oleracea HOM05D004540 ORTHO05D004852 6.9e-07 57.4 68 45.6
Glyma.06G151100 Glycine max HOM05D004540 ORTHO05D004852 6.9e-07 57.4 54 48.1
Lalb_Chr07g0184521 Lupinus albus HOM05D004540 ORTHO05D004852 6.9e-07 57.4 62 45.2
Manes.18G089800 Manihot esculenta HOM05D004540 ORTHO05D004852 6.9e-07 57.4 68 42.6
BcaB01g05561 Brassica carinata HOM05D004540 ORTHO05D004852 9.1e-07 57.0 81 37.0
C03p04700 Brassica napus HOM05D004540 ORTHO05D004852 9.1e-07 57.0 81 37.0
Cc07_g17790 Coffea canephora HOM05D004540 ORTHO05D004852 1.2e-06 56.6 75 44.0
DCAR_001351 Daucus carota HOM05D004540 ORTHO05D004852 1.2e-06 56.6 85 41.2
Nn1g06160 Nelumbo nucifera HOM05D004540 ORTHO05D004852 2.6e-06 55.5 72 38.9
Glyma.04G215100 Glycine max HOM05D004540 ORTHO05D004852 3.4e-06 55.1 54 46.3
A10p27650 Brassica napus HOM05D004540 ORTHO05D004852 4.5e-06 54.7 91 39.6
Migut.L00808 Erythranthe guttata HOM05D004540 ORTHO05D004852 4.5e-06 54.7 88 39.8
Manes.02G177000 Manihot esculenta HOM05D004540 ORTHO05D004852 7.7e-06 53.9 68 44.1


User provided reference genes

Program Settings