Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G18510 Arabidopsis thaliana HOM05D007790 ORTHO05D009880 2.3e-28 128.3 68 100.0
AL3G31810 Arabidopsis lyrata HOM05D007790 ORTHO05D009880 1.2e-24 115.9 72 90.3
Thhalv10021890m.g Eutrema salsugineum HOM05D007790 ORTHO05D009880 1.0e-23 112.8 68 86.8
CARHR093880 Cardamine hirsuta HOM05D007790 ORTHO05D009880 2.2e-23 111.7 68 85.3
BcaB06g25895 Brassica carinata HOM05D007790 ORTHO05D009880 3.8e-23 110.9 68 85.3
A05p31120 Brassica napus HOM05D007790 ORTHO05D009880 3.8e-23 110.9 68 85.3
BcaC05g28610 Brassica carinata HOM05D007790 ORTHO05D009880 1.1e-22 109.4 68 83.8
C05p47140 Brassica napus HOM05D007790 ORTHO05D009880 1.1e-22 109.4 68 83.8
BolC5t33440H Brassica oleracea HOM05D007790 ORTHO05D009880 1.1e-22 109.4 68 83.8
BraA05t21954Z Brassica rapa HOM05D007790 ORTHO05D009880 1.9e-22 108.6 68 83.8
Sp3g16600 Schrenkiella parvula HOM05D007790 ORTHO05D009880 1.2e-21 105.9 68 83.8
BcaB04g20771 Brassica carinata HOM05D007790 ORTHO05D009880 2.7e-21 104.8 68 79.4
Aa31LG8G5350 Aethionema arabicum HOM05D007790 ORTHO05D009880 4.7e-21 104.0 65 83.1
Carub.0003s1829 Capsella rubella HOM05D007790 ORTHO05D009880 6.1e-21 103.6 66 80.3
BcaC09g48808 Brassica carinata HOM05D007790 ORTHO05D009880 1.2e-19 99.4 69 76.8
C01p45710 Brassica napus HOM05D007790 ORTHO05D009880 1.2e-19 99.4 69 76.8
BolC1t04534H Brassica oleracea HOM05D007790 ORTHO05D009880 7.5e-19 96.7 69 73.9
THA.LOC109116948 Tarenaya hassleriana HOM05D007790 ORTHO05D009880 4.2e-14 80.9 52 73.1
Potri.011G140300 Populus trichocarpa HOM05D007790 ORTHO05D009880 2.1e-13 78.6 68 60.3
Eucgr.K02661 Eucalyptus grandis HOM05D007790 ORTHO05D009880 1.4e-12 75.9 62 53.2
Thecc.03G029600 Theobroma cacao HOM05D007790 ORTHO05D009880 1.8e-12 75.5 59 59.3
Manes.01G020200 Manihot esculenta HOM05D007790 ORTHO05D009880 5.2e-12 73.9 59 59.3
Duzib068G0515 Durio zibethinus HOM05D007790 ORTHO05D009880 6.8e-12 73.6 59 57.6
Cpa.g.sc13.39 Carica papaya HOM05D007790 ORTHO05D009880 1.5e-11 72.4 68 52.9
CiPaw.16G084400 Carya illinoinensis HOM05D007790 ORTHO05D009880 2.6e-11 71.6 59 57.6
PGR044G0624 Punica granatum HOM05D007790 ORTHO05D009880 2.6e-11 71.6 53 58.5
Hund18110 Selenicereus undatus HOM05D007790 ORTHO05D009880 2.6e-11 71.6 54 61.1
vmacro22488 Vaccinium macrocarpon HOM05D007790 ORTHO05D009880 4.4e-11 70.9 56 58.9
DCAR_011206 Daucus carota HOM05D007790 ORTHO05D009880 5.7e-11 70.5 55 54.5
Psat3g006760 Pisum sativum HOM05D007790 ORTHO05D009880 9.8e-11 69.7 63 54.0
PSO782G1288 Papaver somniferum HOM05D007790 ORTHO05D009880 1.3e-10 69.3 49 65.3
Ciclev10023249m.g Citrus clementina HOM05D007790 ORTHO05D009880 1.7e-10 68.9 56 58.9
MELO3C017293.2 Cucumis melo HOM05D007790 ORTHO05D009880 2.2e-10 68.6 52 61.5
Gohir.D12G266000 Gossypium hirsutum HOM05D007790 ORTHO05D009880 2.2e-10 68.6 57 52.6
Gorai.008G285700 Gossypium raimondii HOM05D007790 ORTHO05D009880 2.2e-10 68.6 57 52.6
Sc10g0009520 Simmondsia chinensis HOM05D007790 ORTHO05D009880 2.2e-10 68.6 63 57.1
Cfa019804 Carpinus fangiana HOM05D007790 ORTHO05D009880 2.8e-10 68.2 65 53.8
Haze_18633 Corylus avellana HOM05D007790 ORTHO05D009880 3.7e-10 67.8 65 53.8
Gohir.A12G265800 Gossypium hirsutum HOM05D007790 ORTHO05D009880 4.8e-10 67.4 57 50.9
Hma1.2p1_0151F.1_g067280 Hydrangea macrophylla HOM05D007790 ORTHO05D009880 4.8e-10 67.4 66 51.5
RcHm_v2.0_Chr7g0184711 Rosa chinensis HOM05D007790 ORTHO05D009880 4.8e-10 67.4 54 59.3
ClCG06G014960 Citrullus lanatus HOM05D007790 ORTHO05D009880 6.3e-10 67.0 55 54.5
FAN04G3172 Fragaria x ananassa HOM05D007790 ORTHO05D009880 6.3e-10 67.0 64 56.2
FAN13G0824 Fragaria x ananassa HOM05D007790 ORTHO05D009880 6.3e-10 67.0 64 56.2
Atru.chr9.781 Acer truncatum HOM05D007790 ORTHO05D009880 8.3e-10 66.6 61 50.8
CsaV3_1G003680 Cucumis sativus L. HOM05D007790 ORTHO05D009880 1.1e-09 66.2 52 59.6
Glyma.02G139000 Glycine max HOM05D007790 ORTHO05D009880 1.1e-09 66.2 66 50.0
Glyma.07G088700 Glycine max HOM05D007790 ORTHO05D009880 1.1e-09 66.2 66 50.0
FvH4_5g12630 Fragaria vesca HOM05D007790 ORTHO05D009880 1.4e-09 65.9 64 54.7
FAN18G4544 Fragaria x ananassa HOM05D007790 ORTHO05D009880 1.4e-09 65.9 64 54.7
Lsat_1_v5_gn_5_25161 Lactuca sativa HOM05D007790 ORTHO05D009880 1.4e-09 65.9 51 54.9
Sed0012152 Sechium edule HOM05D007790 ORTHO05D009880 1.4e-09 65.9 56 53.6
Actinidia35077 Actinidia chinensis HOM05D007790 ORTHO05D009880 1.8e-09 65.5 64 53.1
arahy.Tifrunner.gnm1.ann1.ZI6FWF Arachis hypogaea HOM05D007790 ORTHO05D009880 1.8e-09 65.5 65 50.8
Medtr7g115600 Medicago truncatula HOM05D007790 ORTHO05D009880 1.8e-09 65.5 69 49.3
arahy.Tifrunner.gnm1.ann1.11NJV3 Arachis hypogaea HOM05D007790 ORTHO05D009880 2.4e-09 65.1 65 50.8
CANSAT64G1586 Cannabis sativa HOM05D007790 ORTHO05D009880 2.4e-09 65.1 61 54.1
Phvul.003G060000 Phaseolus vulgaris HOM05D007790 ORTHO05D009880 2.4e-09 65.1 62 53.2
Actinidia18942 Actinidia chinensis HOM05D007790 ORTHO05D009880 3.1e-09 64.7 64 51.6
Ca_09459_v3 Cicer arietinum L. HOM05D007790 ORTHO05D009880 3.1e-09 64.7 57 50.9
FAN18G2988 Fragaria x ananassa HOM05D007790 ORTHO05D009880 3.1e-09 64.7 64 53.1
Lj2g0008445 Lotus japonicus HOM05D007790 ORTHO05D009880 4.1e-09 64.3 66 50.0
CSS0043662 Camellia sinensis var. sinensis HOM05D007790 ORTHO05D009880 1.2e-08 62.8 46 63.0
SGA_v2.0_scaffold569G52962 Striga asiatica HOM05D007790 ORTHO05D009880 1.6e-08 62.4 56 53.6
MD14G1222600 Malus domestica HOM05D007790 ORTHO05D009880 2.7e-08 61.6 53 54.7
Lalb_Chr09g0331121 Lupinus albus HOM05D007790 ORTHO05D009880 3.5e-08 61.2 53 52.8
TWI81G0366 Tripterygium wilfordii HOM05D007790 ORTHO05D009880 3.5e-08 61.2 61 52.5
Migut.I00921 Erythranthe guttata HOM05D007790 ORTHO05D009880 5.9e-08 60.5 64 48.4
SalBow2G0723 Salvia bowleyana HOM05D007790 ORTHO05D009880 5.9e-08 60.5 62 48.4
MD06G1212000 Malus domestica HOM05D007790 ORTHO05D009880 1.0e-07 59.7 66 50.0
Peaxi162Scf00015g00827 Petunia axillaris HOM05D007790 ORTHO05D009880 1.0e-07 59.7 58 48.3
Nitab4.5_0000410g0040 Nicotiana tabacum HOM05D007790 ORTHO05D009880 1.3e-07 59.3 55 50.9
Nitab4.5_0001599g0140 Nicotiana tabacum HOM05D007790 ORTHO05D009880 1.7e-07 58.9 53 52.8
Os06g0618300 Oryza sativa ssp. japonica HOM05D007790 ORTHO05D009880 6.6e-07 57.0 72 43.1
Solyc03g119723.1 Solanum lycopersicum HOM05D007790 ORTHO05D009880 6.6e-07 57.0 55 47.3
Sopen03g038570 Solanum pennellii HOM05D007790 ORTHO05D009880 6.6e-07 57.0 55 47.3
EL10Ac1g02162 Beta vulgaris HOM05D007790 ORTHO05D009880 1.1e-06 56.2 68 45.6
ATR0681G001 Amborella trichopoda HOM05D007790 ORTHO05D009880 1.9e-06 55.5 61 44.3
Zm00001eb388110 Zea mays HOM05D007790 ORTHO05D009880 2.5e-06 55.1 34 67.6
Glyma.07G167700 Glycine max HOM05D007790 ORTHO05D009880 5.5e-06 53.9 56 50.0
HanXRQChr05g0152891 Helianthus annuus HOM05D007790 ORTHO05D009880 5.5e-06 53.9 56 46.4
Cc04_g07440 Coffea canephora HOM05D007790 ORTHO05D009880 7.2e-06 53.5 62 41.9
Oeu055894.1 Olea europaea HOM05D007790 ORTHO05D009880 9.5e-06 53.1 81 37.0


User provided reference genes

Program Settings