Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G18310 Arabidopsis thaliana HOM05D004345 ORTHO05D005192 0.0e+00 1775.0 874 100.0
AL3G31560 Arabidopsis lyrata HOM05D004345 ORTHO05D005192 0.0e+00 1561.2 859 89.5
Carub.0003s1810 Capsella rubella HOM05D004345 ORTHO05D005192 0.0e+00 1412.5 864 80.7
Sp3g16450 Schrenkiella parvula HOM05D004345 ORTHO05D005192 0.0e+00 1261.9 864 72.8
CARHR093680 Cardamine hirsuta HOM05D004345 ORTHO05D005192 0.0e+00 1243.4 865 73.5
Thhalv10020051m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 0.0e+00 1239.2 863 71.4
Aa31LG8G3600 Aethionema arabicum HOM05D004345 ORTHO05D005192 0.0e+00 1138.6 873 67.5
C05p47630 Brassica napus HOM05D004345 ORTHO05D005192 0.0e+00 1108.6 868 66.6
BolC5t33472H Brassica oleracea HOM05D004345 ORTHO05D005192 0.0e+00 1093.2 872 65.6
A05p31330 Brassica napus HOM05D004345 ORTHO05D005192 0.0e+00 1088.6 870 64.8
BraA05t21971Z Brassica rapa HOM05D004345 ORTHO05D005192 0.0e+00 1087.4 870 64.9
Thhalv10003730m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 4.0e-290 1001.5 731 68.1
THA.LOC104803578 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 6.0e-238 828.2 889 50.8
C05p47510 Brassica napus HOM05D004345 ORTHO05D005192 5.7e-212 741.9 684 58.2
Manes.14G172500 Manihot esculenta HOM05D004345 ORTHO05D005192 9.4e-199 698.0 903 44.7
Sabra12G0028400 Salix brachista HOM05D004345 ORTHO05D005192 2.9e-192 676.4 891 42.8
Gohir.A11G329500 Gossypium hirsutum HOM05D004345 ORTHO05D005192 5.5e-191 672.2 902 42.0
Potri.012G041300 Populus trichocarpa HOM05D004345 ORTHO05D005192 7.2e-191 671.8 890 43.5
Gorai.007G379000 Gossypium raimondii HOM05D004345 ORTHO05D005192 5.7e-188 662.1 902 41.7
CiPaw.12G040000 Carya illinoinensis HOM05D004345 ORTHO05D005192 2.0e-177 627.1 906 41.6
TWI60G1145 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 1.0e-176 624.8 888 41.0
Prupe.2G050600 Prunus persica HOM05D004345 ORTHO05D005192 5.6e-175 619.0 930 40.3
MD04G1026400 Malus domestica HOM05D004345 ORTHO05D005192 4.7e-174 615.9 933 39.9
CiPaw.16G081600 Carya illinoinensis HOM05D004345 ORTHO05D005192 1.8e-173 614.0 904 41.0
Cfa020657 Carpinus fangiana HOM05D004345 ORTHO05D005192 9.8e-172 608.2 921 41.6
CANSAT21G1743 Cannabis sativa HOM05D004345 ORTHO05D005192 8.3e-171 605.1 905 39.8
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 1.3e-168 597.8 905 40.9
CiPaw.12G046900 Carya illinoinensis HOM05D004345 ORTHO05D005192 1.9e-167 594.0 884 40.8
QL09p016785 Quercus lobata HOM05D004345 ORTHO05D005192 9.5e-167 591.7 910 39.7
QL07p000534 Quercus lobata HOM05D004345 ORTHO05D005192 8.0e-166 588.6 887 40.8
Ciclev10000213m.g Citrus clementina HOM05D004345 ORTHO05D005192 3.1e-165 586.6 897 39.8
FvH4_5g25850 Fragaria vesca HOM05D004345 ORTHO05D005192 1.2e-164 584.7 925 39.2
FAN18G0597 Fragaria x ananassa HOM05D004345 ORTHO05D005192 1.5e-164 584.3 925 39.1
Actinidia34666 Actinidia chinensis HOM05D004345 ORTHO05D005192 2.0e-164 583.9 900 39.6
FAN13G0999 Fragaria x ananassa HOM05D004345 ORTHO05D005192 1.3e-163 581.3 925 39.4
QL04p019450 Quercus lobata HOM05D004345 ORTHO05D005192 2.9e-163 580.1 876 40.8
Dinv36001 Davidia involucrata HOM05D004345 ORTHO05D005192 6.4e-163 578.9 774 41.7
CsaV3_1G046170 Cucumis sativus L. HOM05D004345 ORTHO05D005192 6.6e-160 568.9 902 38.4
FAN04G0730 Fragaria x ananassa HOM05D004345 ORTHO05D005192 8.6e-160 568.5 925 39.1
Glyma.10G030100 Glycine max HOM05D004345 ORTHO05D005192 1.9e-159 567.4 894 38.1
Gohir.D11G348700 Gossypium hirsutum HOM05D004345 ORTHO05D005192 3.3e-159 566.6 715 42.9
Sed0027926 Sechium edule HOM05D004345 ORTHO05D005192 8.1e-158 562.0 894 38.7
Glyma.02G144000 Glycine max HOM05D004345 ORTHO05D005192 4.4e-156 556.2 889 38.1
MELO3C021732.2 Cucumis melo HOM05D004345 ORTHO05D005192 7.5e-156 555.4 900 37.7
TWI31G0574 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 4.9e-155 552.7 893 39.3
Duzib116G0224 Durio zibethinus HOM05D004345 ORTHO05D005192 7.1e-154 548.9 907 39.1
Lj5g0026700 Lotus japonicus HOM05D004345 ORTHO05D005192 6.6e-152 542.3 892 37.6
Lalb_Chr21g0307461 Lupinus albus HOM05D004345 ORTHO05D005192 2.8e-150 537.0 896 37.4
VMungo1127G1998 Vigna mungo HOM05D004345 ORTHO05D005192 4.7e-150 536.2 883 37.0
Lj8C411T10 Lonicera japonica HOM05D004345 ORTHO05D005192 1.2e-145 521.5 789 39.2
Phvul.011G090800 Phaseolus vulgaris HOM05D004345 ORTHO05D005192 2.1e-145 520.8 899 36.6
Dinv35989 Davidia involucrata HOM05D004345 ORTHO05D004155 1.3e-144 518.1 772 39.4
Eucgr.K02289 Eucalyptus grandis HOM05D004345 ORTHO05D005192 7.3e-143 512.3 892 37.3
Rhsim12G0029000 Rhododendron simsii HOM05D004345 ORTHO05D005192 8.1e-142 508.8 822 36.9
VMungo1215G1527 Vigna mungo HOM05D004345 ORTHO05D005192 1.4e-141 508.1 883 36.1
TPR.G10330 Trifolium pratense HOM05D004345 ORTHO05D005192 1.8e-141 507.7 888 36.9
Psat5g128760 Pisum sativum HOM05D004345 ORTHO05D005192 2.0e-140 504.2 892 34.9
vmacro01076 Vaccinium macrocarpon HOM05D004345 ORTHO05D005192 7.6e-140 502.3 882 35.6
Eucgr.C04176 Eucalyptus grandis HOM05D004345 ORTHO05D005192 1.3e-139 501.5 890 35.6
Medtr3g069120 Medicago truncatula HOM05D004345 ORTHO05D005192 1.7e-139 501.1 881 36.2
Nn1g01729 Nelumbo nucifera HOM05D004345 ORTHO05D005192 6.4e-139 499.2 939 34.3
PGR044G2251 Punica granatum HOM05D004345 ORTHO05D005192 7.1e-138 495.7 879 36.6
CSS0030547 Camellia sinensis var. sinensis HOM05D004345 ORTHO05D005192 1.9e-135 487.6 749 37.8
SHI21683 Sapria himalayana HOM05D004345 ORTHO05D005192 2.1e-134 484.2 853 37.0
CiPaw.12G047000 Carya illinoinensis HOM05D004345 ORTHO05D005192 9.9e-132 475.3 698 41.3
Lsat_1_v5_gn_8_70480 Lactuca sativa HOM05D004345 ORTHO05D005192 6.4e-131 472.6 890 35.3
AUR62032951 Chenopodium quinoa HOM05D004345 ORTHO05D005192 1.1e-130 471.9 890 35.2
EL10Ac9g22980 Beta vulgaris HOM05D000200 ORTHO05D001546 8.7e-128 462.2 875 35.2
Hund17623 Selenicereus undatus HOM05D004345 ORTHO05D005192 8.7e-128 462.2 889 35.1
Ca_09724_v3 Cicer arietinum L. HOM05D004345 ORTHO05D005192 3.1e-125 453.8 767 35.9
BcaB01g01503 Brassica carinata HOM05D004345 ORTHO05D005192 2.9e-123 447.2 336 69.6
DCAR_009432 Daucus carota HOM05D004345 ORTHO05D005192 1.4e-122 444.9 895 33.2
HanXRQChr07g0196981 Helianthus annuus HOM05D004345 ORTHO05D005192 4.2e-122 443.4 876 33.3
ECA234G4090 Erigeron canadensis HOM05D004345 ORTHO05D005192 5.6e-119 433.0 790 35.6
MSTRG.24391 Avicennia marina HOM05D004345 ORTHO05D005192 1.3e-118 431.8 905 32.8
ECA238G4368 Erigeron canadensis HOM05D004345 ORTHO05D005192 5.3e-117 426.4 897 33.3
Ah.01g012750 Amaranthus hybridus HOM05D004345 ORTHO05D005192 2.6e-116 424.1 910 33.4
Migut.N02797 Erythranthe guttata HOM05D004345 ORTHO05D005192 2.2e-115 421.0 924 32.4
Cpa.g.sc3060.1 Carica papaya HOM05D004345 ORTHO05D005192 1.4e-114 418.3 861 34.4
SalBow3G2318 Salvia bowleyana HOM05D004345 ORTHO05D005192 4.2e-114 416.8 909 33.1
Ah.03g148550 Amaranthus hybridus HOM05D004345 ORTHO05D005192 8.7e-112 409.1 892 32.8
Hund25524 Selenicereus undatus HOM05D004345 ORTHO05D005192 1.1e-111 408.7 893 31.8
RcHm_v2.0_Chr7g0216331 Rosa chinensis HOM05D004345 ORTHO05D005192 4.3e-111 406.8 916 33.2
Aqoxy4G03088 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 4.2e-106 390.2 924 31.5
Dinv39346 Davidia involucrata HOM05D004345 ORTHO05D005192 3.9e-104 383.6 747 36.3
Solyc01g098450.4 Solanum lycopersicum HOM05D004345 ORTHO05D005192 5.1e-104 383.3 918 30.9
Sopen01g042020 Solanum pennellii HOM05D004345 ORTHO05D005192 3.3e-103 380.6 917 30.9
Peaxi162Scf00434g00066 Petunia axillaris HOM05D004345 ORTHO05D005192 4.3e-103 380.2 897 31.3
Cc07_g15690 Coffea canephora HOM05D004345 ORTHO05D005192 2.8e-102 377.5 922 31.1
unitig_744.g24116 Utricularia gibba HOM05D004345 ORTHO05D005192 7.2e-98 362.8 881 30.0
Aqoxy4G01527 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 2.1e-97 361.3 928 30.2
BcaC05g28685 Brassica carinata HOM05D004345 ORTHO05D005192 1.8e-96 358.2 279 66.7
Nitab4.5_0008354g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 2.3e-96 357.8 888 30.7
Nitab4.5_0001423g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 1.7e-94 351.7 855 30.5
Cpa.g.sc4881.1 Carica papaya HOM05D004345 ORTHO05D005192 2.1e-89 334.7 577 37.3
Nitab4.5_0001903g0100 Nicotiana tabacum HOM05D004345 ORTHO05D005192 2.7e-89 334.3 900 29.1
MBI07_g11743_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 6.7e-88 329.7 874 30.2
PSO210G0907 Papaver somniferum HOM05D004345 ORTHO05D005192 8.5e-83 312.8 824 30.3
COL.COLO4_14552 Corchorus olitorius HOM05D004345 ORTHO05D005192 1.5e-82 312.0 434 44.0
A05p31320 Brassica napus HOM05D004345 ORTHO05D005192 3.2e-82 310.8 280 55.0
BraA05t21970Z Brassica rapa HOM05D004345 ORTHO05D005192 3.2e-82 310.8 280 55.0
QL07p001298 Quercus lobata HOM05D004345 ORTHO05D005192 1.6e-81 308.5 781 31.8
Thecc.05G018000 Theobroma cacao HOM05D004345 ORTHO05D005192 4.7e-81 307.0 638 33.4
BolC5t33532H Brassica oleracea HOM05D004345 ORTHO05D005192 9.1e-77 292.7 240 63.8
BcaB06g25876 Brassica carinata HOM05D004345 ORTHO05D005192 1.1e-74 285.8 206 65.5
Oeu031657.1 Olea europaea HOM05D004345 ORTHO05D005192 5.2e-72 276.9 504 34.5
HPP92_000827 Vanilla planifolia HOM05D004345 ORTHO05D005192 1.6e-68 265.4 888 27.7
Os03g0240400 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 1.7e-67 261.9 818 28.5
Zm00001eb399070 Zea mays HOM05D004345 ORTHO05D005192 4.4e-63 247.3 808 26.7
THA.LOC104807021 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 3.7e-62 244.2 303 45.2
CDE12G0342 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 6.3e-62 243.4 660 29.5
TAR383G0351 Trochodendron aralioides HOM05D004345 ORTHO05D005192 1.6e-60 238.8 377 35.8
ATR0691G134 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.5e-58 232.3 843 27.3
Os09g0104700 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 1.7e-51 208.8 846 24.5
MBI07_g44810_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 3.7e-46 191.0 449 32.7
Aqoxy7G01729 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 5.1e-43 180.6 455 29.7
CDE09G0455 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 7.3e-42 176.8 555 26.8
PSO384G0273 Papaver somniferum HOM05D004345 ORTHO05D005192 2.3e-40 171.8 485 28.9
PSO210G0382 Papaver somniferum HOM05D004345 ORTHO05D005192 1.2e-39 169.5 526 28.7
PSO384G0711 Papaver somniferum HOM05D004345 ORTHO05D005192 4.6e-36 157.5 439 29.2
ATR0446G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.3e-35 156.0 760 26.2
RcHm_v2.0_Chr6g0264721 Rosa chinensis HOM05D004345 ORTHO05D005192 1.1e-32 146.4 201 38.8
QL07p000983 Quercus lobata HOM05D004345 ORTHO05D005192 5.8e-31 140.6 178 41.6
SEGI_03816 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 7.6e-31 140.2 684 22.8
ATR1192G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.7e-30 139.0 446 29.1
BcaB06g25878 Brassica carinata HOM05D004345 ORTHO05D005192 3.8e-30 137.9 105 69.5
PSO407G0063 Papaver somniferum HOM05D004345 ORTHO05D005192 7.1e-29 133.7 338 30.2
ATR0022G053 Amborella trichopoda HOM05D004345 ORTHO05D005192 5.1e-27 127.5 327 27.2
MBI07_g37626_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 7.3e-26 123.6 477 27.3
Gohir.D11G289900 Gossypium hirsutum HOM05D004345 ORTHO05D005192 9.6e-26 123.2 380 25.8
Gorai.007G313800 Gossypium raimondii HOM05D004345 ORTHO05D005192 4.8e-25 120.9 380 25.5
ATR0661G336 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.1e-24 119.8 513 27.1
C05p47540 Brassica napus HOM05D004345 ORTHO05D005192 1.7e-22 112.5 71 71.8
Sc22g0003820 Simmondsia chinensis HOM05D004345 ORTHO05D005192 1.5e-18 99.4 154 45.5
ATR0964G004 Amborella trichopoda HOM05D004345 ORTHO05D005192 7.3e-18 97.1 405 28.6
BcaB06g25877 Brassica carinata HOM05D004345 ORTHO05D005192 1.5e-15 89.4 60 61.7
SMO203G0127 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 6.4e-14 84.0 356 20.8
Pp3c14_24820 Physcomitrium patens HOM05D004345 ORTHO05D005192 1.2e-12 79.7 381 23.6
Psat5g200920 Pisum sativum HOM05D000856 ORTHO05D005192 6.7e-11 73.9 94 39.4
Psat6g058760 Pisum sativum HOM05D004345 ORTHO05D005192 8.7e-11 73.6 116 39.7
ATR0560G006 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.5e-10 72.8 195 31.3
SEGI_28583 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 3.3e-10 71.6 416 22.8
CDE04G1779 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 1.5e-07 62.8 210 28.6


User provided reference genes

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