Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G18270 Arabidopsis thaliana HOM05D004238 ORTHO05D004934 3.8e-227 791.2 411 100.0
Carub.0003s1804 Capsella rubella HOM05D004238 ORTHO05D004934 4.9e-198 694.5 409 89.5
AL3G31500 Arabidopsis lyrata HOM05D004238 ORTHO05D004934 1.2e-196 689.9 379 92.6
Thhalv10020846m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 8.1e-193 677.2 409 86.1
A05p31380 Brassica napus HOM05D004238 ORTHO05D004934 1.4e-184 649.8 403 84.4
BraA05t21977Z Brassica rapa HOM05D004238 ORTHO05D004934 2.6e-183 645.6 403 83.9
Thhalv10022164m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 2.9e-182 642.1 385 87.0
C05p47680 Brassica napus HOM05D004238 ORTHO05D004934 3.8e-182 641.7 403 83.1
BolC5t33477H Brassica oleracea HOM05D004238 ORTHO05D004934 4.2e-181 638.3 403 82.9
Aa31LG8G5120 Aethionema arabicum HOM05D004238 ORTHO05D004934 2.5e-178 629.0 379 83.1
THA.LOC104820382 Tarenaya hassleriana HOM05D004238 ORTHO05D004934 9.0e-168 594.0 406 74.6
Atru.chr9.900 Acer truncatum HOM05D004238 ORTHO05D004934 5.1e-155 551.6 373 72.1
COL.COLO4_20838 Corchorus olitorius HOM05D004238 ORTHO05D004934 9.7e-154 547.4 384 72.1
Duzib084G0471 Durio zibethinus HOM05D004238 ORTHO05D004934 9.7e-154 547.4 383 70.5
Thecc.03G040700 Theobroma cacao HOM05D004238 ORTHO05D004934 9.7e-154 547.4 398 69.6
Lj4g0001453 Lotus japonicus HOM05D004238 ORTHO05D004934 6.3e-153 544.7 415 67.7
Potri.012G054200 Populus trichocarpa HOM05D004238 ORTHO05D004934 8.2e-153 544.3 375 71.7
Phvul.002G182700 Phaseolus vulgaris HOM05D004238 ORTHO05D004934 2.4e-152 542.7 376 70.2
Sp3g16390 Schrenkiella parvula HOM05D004238 ORTHO05D004934 9.0e-152 540.8 389 77.9
Aqoxy3G00204 Aquilegia oxysepala HOM05D004238 ORTHO05D004934 2.0e-151 539.7 373 70.2
DCAR_015154 Daucus carota HOM05D004238 ORTHO05D004934 2.0e-151 539.7 381 70.6
TAR371G0763 Trochodendron aralioides HOM05D004238 ORTHO05D004934 5.9e-151 538.1 373 71.3
Sabra12G0038000 Salix brachista HOM05D004238 ORTHO05D004934 1.0e-150 537.3 369 71.5
Dinv28139 Davidia involucrata HOM05D004238 ORTHO05D004934 1.7e-150 536.6 373 70.2
Ca_11587_v3 Cicer arietinum L. HOM05D004238 ORTHO05D004934 2.2e-150 536.2 414 65.2
Glyma.08G094600 Glycine max HOM05D004238 ORTHO05D004934 3.8e-150 535.4 376 69.9
Psat7g083560 Pisum sativum HOM05D004238 ORTHO05D004934 5.0e-150 535.0 417 65.2
TPR.G5108 Trifolium pratense HOM05D004238 ORTHO05D004934 5.0e-150 535.0 416 65.6
VMungo0251G1679 Vigna mungo HOM05D004238 ORTHO05D004934 5.0e-150 535.0 408 65.9
Glyma.05G139300 Glycine max HOM05D004238 ORTHO05D004934 6.5e-150 534.6 381 69.3
Haze_18725 Corylus avellana HOM05D004238 ORTHO05D004934 8.5e-150 534.3 394 68.3
MELO3C017324.2 Cucumis melo HOM05D004238 ORTHO05D004934 2.5e-149 532.7 379 68.6
CsaV3_1G004010 Cucumis sativus L. HOM05D004238 ORTHO05D004934 2.5e-149 532.7 373 68.4
Nitab4.5_0001986g0030 Nicotiana tabacum HOM05D004238 ORTHO05D004934 2.5e-149 532.7 402 67.2
PSO017G2643 Papaver somniferum HOM05D004238 ORTHO05D004934 3.2e-149 532.3 373 70.0
GSVIVG01008335001 Vitis vinifera HOM05D004238 ORTHO05D004934 5.5e-149 531.6 375 69.3
arahy.Tifrunner.gnm1.ann1.NC6GJT Arachis hypogaea HOM05D004238 ORTHO05D004934 1.2e-148 530.4 388 68.3
Nitab4.5_0004028g0040 Nicotiana tabacum HOM05D004238 ORTHO05D004934 1.2e-148 530.4 407 66.6
MBI09_g25158_MAGBIO Magnolia biondii HOM05D004238 ORTHO05D004934 1.6e-148 530.0 412 65.3
PGSC0003DMG400005732 Solanum tuberosum HOM05D004238 ORTHO05D004934 1.6e-148 530.0 373 70.0
CANSAT80G2380 Cannabis sativa HOM05D004238 ORTHO05D004934 2.7e-148 529.3 407 65.6
RcHm_v2.0_Chr7g0179451 Rosa chinensis HOM05D004238 ORTHO05D004934 4.6e-148 528.5 407 66.3
Solyc03g119200.4 Solanum lycopersicum HOM05D004238 ORTHO05D004934 4.6e-148 528.5 408 66.2
CAN.G1129.11 Capsicum annuum HOM05D004238 ORTHO05D004934 7.9e-148 527.7 401 66.3
Lalb_Chr13g0293671 Lupinus albus HOM05D004238 ORTHO05D004934 7.9e-148 527.7 376 68.6
arahy.Tifrunner.gnm1.ann1.KCMD1F Arachis hypogaea HOM05D004238 ORTHO05D004934 1.0e-147 527.3 388 68.3
Cpa.g.sc3.467 Carica papaya HOM05D004238 ORTHO05D004934 1.0e-147 527.3 373 70.2
Sed0011571 Sechium edule HOM05D004238 ORTHO05D004934 1.4e-147 526.9 373 68.1
Hma1.2p1_1283F.1_g272760 Hydrangea macrophylla HOM05D004238 ORTHO05D004934 1.8e-147 526.6 414 65.7
CSS0018341 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 2.3e-147 526.2 372 69.1
CiPaw.16G088800 Carya illinoinensis HOM05D004238 ORTHO05D004934 2.3e-147 526.2 395 67.3
ClCG06G014610 Citrullus lanatus HOM05D004238 ORTHO05D004934 2.3e-147 526.2 373 67.8
MD14G1229600 Malus domestica HOM05D004238 ORTHO05D004934 2.3e-147 526.2 415 63.9
Peaxi162Scf00683g00158 Petunia axillaris HOM05D004238 ORTHO05D004934 5.1e-147 525.0 413 64.6
TWI15G0256 Tripterygium wilfordii HOM05D004238 ORTHO05D004934 5.1e-147 525.0 380 68.7
CSS0035838 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 6.7e-147 524.6 372 68.8
FAN13G1096 Fragaria x ananassa HOM05D004238 ORTHO05D004934 6.7e-147 524.6 376 69.7
Prupe.5G224400 Prunus persica HOM05D004238 ORTHO05D004934 6.7e-147 524.6 376 68.4
TAR535G0010 Trochodendron aralioides HOM05D004238 ORTHO05D004934 1.1e-146 523.9 393 66.9
Eucgr.B00825 Eucalyptus grandis HOM05D004238 ORTHO05D004934 1.5e-146 523.5 370 68.6
FAN18G3483 Fragaria x ananassa HOM05D004238 ORTHO05D004934 7.4e-146 521.2 376 69.4
Gohir.D07G071400 Gossypium hirsutum HOM05D004238 ORTHO05D004934 1.7e-145 520.0 374 70.9
Nn4g23948 Nelumbo nucifera HOM05D004238 ORTHO05D004934 5.3e-144 515.0 385 67.0
FAN08G0774 Fragaria x ananassa HOM05D004238 ORTHO05D004934 6.9e-144 514.6 389 67.4
Cc04_g06880 Coffea canephora HOM05D004238 ORTHO05D004934 9.1e-144 514.2 376 68.6
Lsat_1_v5_gn_8_143241 Lactuca sativa HOM05D004238 ORTHO05D004934 9.1e-144 514.2 394 65.2
Oeu000985.1 Olea europaea HOM05D004238 ORTHO05D004934 9.1e-144 514.2 410 64.1
Lj9C425T3 Lonicera japonica HOM05D004238 ORTHO05D004934 1.2e-143 513.8 376 67.8
HPP92_008849 Vanilla planifolia HOM05D004238 ORTHO05D004934 1.2e-143 513.8 416 62.7
PGR083G1292 Punica granatum HOM05D004238 ORTHO05D004934 3.4e-143 512.3 386 65.8
Hund02354 Selenicereus undatus HOM05D004238 ORTHO05D004934 3.8e-142 508.8 429 61.1
Migut.I00409 Erythranthe guttata HOM05D004238 ORTHO05D004934 5.0e-142 508.4 411 63.0
PSO478G0260 Papaver somniferum HOM05D004238 ORTHO05D004934 7.9e-140 501.1 349 70.8
ATR0807G117 Amborella trichopoda HOM05D004238 ORTHO05D004934 1.8e-139 500.0 370 65.9
MSTRG.11313 Avicennia marina HOM05D004238 ORTHO05D004934 8.8e-139 497.7 373 66.2
FAN04G1535 Fragaria x ananassa HOM05D004238 ORTHO05D004934 1.5e-138 496.9 376 67.6
TAR426G0005 Trochodendron aralioides HOM05D004238 ORTHO05D004934 2.0e-138 496.5 369 68.3
FvH4_5g16670 Fragaria vesca HOM05D004238 ORTHO05D004934 4.4e-138 495.4 352 71.3
Gorai.001G075300 Gossypium raimondii HOM05D004238 ORTHO05D004934 1.8e-136 490.0 355 71.0
HanXRQChr17g0559411 Helianthus annuus HOM05D004238 ORTHO05D004934 7.0e-136 488.0 395 61.5
DCAR_011373 Daucus carota HOM05D004238 ORTHO05D004934 1.2e-135 487.3 379 64.1
MD06G1220000 Malus domestica HOM05D004238 ORTHO05D004934 1.3e-134 483.8 377 64.7
Os01g0138900 Oryza sativa ssp. japonica HOM05D004238 ORTHO05D004934 6.5e-134 481.5 372 64.8
Sc04g0003400 Simmondsia chinensis HOM05D004238 ORTHO05D004934 3.2e-133 479.2 393 61.3
Rhsim08G0130500 Rhododendron simsii HOM05D004238 ORTHO05D004934 2.1e-132 476.5 408 61.5
Rhsim08G0130600 Rhododendron simsii HOM05D004238 ORTHO05D004934 2.1e-132 476.5 408 61.5
Dinv34796 Davidia involucrata HOM05D004238 ORTHO05D004934 6.1e-132 474.9 374 62.3
DCAR_011371 Daucus carota HOM05D004238 ORTHO05D004934 2.3e-131 473.0 351 68.1
Manes.01G014900 Manihot esculenta HOM05D004238 ORTHO05D004934 9.7e-130 467.6 387 62.3
DCAR_024088 Daucus carota HOM05D004238 ORTHO05D004934 8.5e-126 454.5 336 67.3
Dinv12220 Davidia involucrata HOM05D004238 ORTHO05D004934 2.5e-125 453.0 404 57.7
Atru.chr1.1618 Acer truncatum HOM05D004238 ORTHO05D004934 3.4e-122 442.6 373 58.7
Ciclev10011789m.g Citrus clementina HOM05D004238 ORTHO05D004934 4.4e-122 442.2 405 55.6
CiPaw.15G135000 Carya illinoinensis HOM05D004238 ORTHO05D004934 1.7e-121 440.3 304 70.1
Manes.02G071200 Manihot esculenta HOM05D004238 ORTHO05D004934 6.3e-121 438.3 403 55.3
CDE08G0051 Ceratophyllum demersum HOM05D004238 ORTHO05D004934 2.4e-120 436.4 370 59.2
Duzib138G0550 Durio zibethinus HOM05D004238 ORTHO05D004934 3.8e-118 429.1 369 56.9
CARHR093620 Cardamine hirsuta HOM05D004238 ORTHO05D004934 9.4e-117 424.5 228 91.7
Mapoly0058s0107 Marchantia polymorpha HOM05D004238 ORTHO05D004934 2.1e-116 423.3 363 58.1
CsaV3_2G033830 Cucumis sativus L. HOM05D004238 ORTHO05D004934 2.0e-114 416.8 370 54.9
Gohir.D11G171700 Gossypium hirsutum HOM05D004238 ORTHO05D004934 3.4e-114 416.0 405 52.3
Pp3c2_34370 Physcomitrium patens HOM05D004238 ORTHO05D004934 5.7e-114 415.2 368 57.6
Thecc.04G129000 Theobroma cacao HOM05D004238 ORTHO05D004934 6.3e-113 411.8 410 52.7
Gohir.A11G165600 Gossypium hirsutum HOM05D004238 ORTHO05D004934 1.1e-112 411.0 405 51.9
DCAR_011370 Daucus carota HOM05D004238 ORTHO05D004934 5.9e-111 405.2 416 51.4
ClCG11G007750 Citrullus lanatus HOM05D004238 ORTHO05D004934 6.6e-110 401.7 381 52.2
COL.COLO4_09370 Corchorus olitorius HOM05D004238 ORTHO05D004934 2.5e-109 399.8 408 51.0
Gohir.A07G066800 Gossypium hirsutum HOM05D004238 ORTHO05D004934 1.2e-108 397.5 292 70.9
HPP92_008863 Vanilla planifolia HOM05D004238 ORTHO05D004934 1.2e-108 397.5 349 59.6
SMO146G0383 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 4.0e-107 392.5 346 56.6
Cpa.g.sc170.33 Carica papaya HOM05D004238 ORTHO05D004934 5.2e-107 392.1 422 48.6
DCAR_011367 Daucus carota HOM05D004238 ORTHO05D004934 8.9e-107 391.3 346 56.1
CANSAT78G0772 Cannabis sativa HOM05D004238 ORTHO05D004934 5.7e-106 388.7 375 51.7
DCAR_011366 Daucus carota HOM05D004238 ORTHO05D004934 3.6e-100 369.4 355 53.2
Zm00001eb335570 Zea mays HOM05D004238 ORTHO05D004934 6.2e-100 368.6 260 68.1
Zm00001eb124820 Zea mays HOM05D004238 ORTHO05D004934 8.3e-97 358.2 259 66.0
ECA233G1745 Erigeron canadensis HOM05D004238 ORTHO05D004934 1.9e-96 357.1 373 51.2
SMO146G0146 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 1.1e-91 341.3 354 51.7
Eucgr.B00826 Eucalyptus grandis HOM05D004238 ORTHO05D004934 5.8e-90 335.5 367 49.0
DCAR_000177 Daucus carota HOM05D004238 ORTHO05D004934 1.1e-85 321.2 225 66.2
Potri.015G044400 Populus trichocarpa HOM05D004238 ORTHO05D004934 9.2e-80 301.6 296 55.7
Nn2g15201 Nelumbo nucifera HOM05D004238 ORTHO05D004934 4.3e-69 266.2 202 66.3
PRCOL_00000826 Prasinoderma coloniale HOM05D004238 ORTHO05D004934 7.4e-61 238.8 330 41.2
DCAR_011376 Daucus carota HOM05D004238 ORTHO05D004934 3.4e-58 229.9 186 59.7
TAR371G0419 Trochodendron aralioides HOM05D004238 ORTHO05D004934 3.0e-46 190.3 150 64.7
Duzib205G0622 Durio zibethinus HOM05D004238 ORTHO05D004934 1.8e-43 181.0 208 53.4
Psat5g132800 Pisum sativum HOM05D004238 ORTHO05D004934 3.5e-39 166.8 118 70.3
Sabra15G0040700 Salix brachista HOM05D004238 ORTHO05D004934 1.0e-38 165.2 173 46.8
DCAR_000092 Daucus carota HOM05D004238 ORTHO05D004934 5.7e-37 159.5 111 64.0
C05p38610 Brassica napus HOM05D004238 ORTHO05D004934 9.7e-37 158.7 111 77.5
AagrBONN_evm.TU.Sc2ySwM_117.3507 Anthoceros agrestis HOM05D004238 ORTHO05D004934 1.4e-35 154.8 135 58.5
Sed0014968 Sechium edule HOM05D004238 ORTHO05D004934 2.4e-35 154.1 117 62.4
TPR.G26740 Trifolium pratense HOM05D004238 ORTHO05D004934 2.4e-35 154.1 104 68.3
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 3.1e-35 153.7 159 54.7
C08p35620 Brassica napus HOM05D004238 ORTHO05D004934 5.0e-33 146.4 91 84.6
Atru.chr12.656 Acer truncatum HOM05D004238 ORTHO05D004934 8.5e-33 145.6 116 57.8
Lalb_Chr00c06g0404671 Lupinus albus HOM05D004238 ORTHO05D004934 3.2e-32 143.7 112 67.0
Atru.chr12.683 Acer truncatum HOM05D004238 ORTHO05D004934 4.2e-32 143.3 112 58.9
MELO3C008155.2 Cucumis melo HOM05D004238 ORTHO05D004934 7.2e-32 142.5 147 47.6
arahy.Tifrunner.gnm1.ann1.78LW43 Arachis hypogaea HOM05D004238 ORTHO05D004934 2.1e-31 141.0 112 65.2
BolC5t32601H Brassica oleracea HOM05D004238 ORTHO05D004934 2.1e-31 141.0 98 76.5
arahy.Tifrunner.gnm1.ann1.8NU3PL Arachis hypogaea HOM05D004238 ORTHO05D004934 1.0e-30 138.7 112 64.3
arahy.Tifrunner.gnm1.ann1.K93WBA Arachis hypogaea HOM05D004238 ORTHO05D004934 2.4e-27 127.5 101 65.3
BcaC05g27863 Brassica carinata HOM05D002270 ORTHO05D002866 3.1e-27 127.1 91 75.8
BcaC08g44328 Brassica carinata HOM05D004238 ORTHO05D004934 4.5e-26 123.2 75 82.7
C06p17530 Brassica napus HOM05D004238 ORTHO05D004934 4.5e-26 123.2 75 82.7
Pp3s30_460 Physcomitrium patens HOM05D019034 ORTHO05D004934 5.1e-22 109.8 343 23.6
SEGI_36538 Sequoiadendron giganteum HOM05D004238 ORTHO05D004934 1.5e-21 108.2 120 48.3
BcaC04g23227 Brassica carinata HOM05D004238 ORTHO05D004934 3.3e-21 107.1 62 87.1
BcaC08g45100 Brassica carinata HOM05D004238 ORTHO05D004934 3.3e-21 107.1 62 87.1
BolC6t37880H Brassica oleracea HOM05D004238 ORTHO05D004934 3.3e-21 107.1 62 87.1
BolC9t53984H Brassica oleracea HOM05D004238 ORTHO05D004934 3.3e-21 107.1 62 87.1
Pp3s30_70 Physcomitrium patens HOM05D004238 ORTHO05D004934 3.3e-21 107.1 332 25.6
Psat0s1333g0160 Pisum sativum HOM05D004238 ORTHO05D004934 5.7e-21 106.3 79 67.1
BcaC06g36376 Brassica carinata HOM05D004238 ORTHO05D004934 1.3e-20 105.1 62 85.5
Nn4g22334 Nelumbo nucifera HOM05D004238 ORTHO05D004934 1.4e-19 101.7 82 64.6
BolC6t36947H Brassica oleracea HOM05D004238 ORTHO05D004934 6.5e-17 92.8 58 81.0
arahy.Tifrunner.gnm1.ann1.QA2PAR Arachis hypogaea HOM05D004238 ORTHO05D004934 4.2e-16 90.1 71 63.4
Nn4g22335 Nelumbo nucifera HOM05D004238 ORTHO05D004934 2.7e-15 87.4 61 67.2
Zm00001eb084840 Zea mays HOM05D004238 ORTHO05D004934 4.0e-14 83.6 73 54.8
Solyc08g045760.1 Solanum lycopersicum HOM05D004238 ORTHO05D004934 2.2e-12 77.8 66 53.0
VMungo1127G1492 Vigna mungo HOM05D000769 ORTHO05D000598 2.8e-12 77.4 71 57.7
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 3.7e-12 77.0 53 71.7
Atru.chr12.682 Acer truncatum HOM05D004238 ORTHO05D004934 6.3e-12 76.3 64 60.9
arahy.Tifrunner.gnm1.ann1.QI3NWI Arachis hypogaea HOM05D006876 ORTHO05D008708 8.2e-12 75.9 58 60.3
Dinv00811 Davidia involucrata HOM05D004238 ORTHO05D004934 9.1e-11 72.4 141 32.6
BcaB06g26915 Brassica carinata HOM05D004238 ORTHO05D004934 3.8e-09 67.0 86 50.0
TAR374G1013 Trochodendron aralioides HOM05D001418 ORTHO05D002038 3.8e-09 67.0 60 51.7
BcaB06g26914 Brassica carinata HOM05D004238 ORTHO05D004934 6.5e-09 66.2 56 62.5
Pp3c9_10620 Physcomitrium patens HOM05D003438 ORTHO05D004235 1.5e-08 65.1 246 28.9
Zm00001eb312660 Zea mays HOM05D004238 ORTHO05D004934 1.5e-08 65.1 75 50.7
CiPaw.05G119100 Carya illinoinensis HOM05D003438 ORTHO05D004235 2.5e-08 64.3 393 24.9
BcaC02g10475 Brassica carinata HOM05D004238 ORTHO05D004934 1.6e-07 61.6 39 76.9
Dinv16582 Davidia involucrata HOM05D003438 ORTHO05D004235 6.1e-07 59.7 357 24.4
Hma1.2p1_0762F.1_g214440 Hydrangea macrophylla HOM05D003438 ORTHO05D004235 6.8e-06 56.2 395 24.3
Hma1.2p1_0762F.1_g214450 Hydrangea macrophylla HOM05D003438 ORTHO05D004235 6.8e-06 56.2 395 24.3


User provided reference genes

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