Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G17930 Arabidopsis thaliana HOM05D007021 ORTHO05D008916 7.6e-85 317.4 191 100.0
AL3G31100 Arabidopsis lyrata HOM05D007021 ORTHO05D008916 3.2e-75 285.4 191 92.7
CARHR093260 Cardamine hirsuta HOM05D007021 ORTHO05D008916 7.8e-74 280.8 191 80.1
Carub.0003s1766 Capsella rubella HOM05D007021 ORTHO05D008916 1.6e-71 273.1 192 89.6
Thhalv10021570m.g Eutrema salsugineum HOM05D007021 ORTHO05D008916 9.9e-69 263.8 193 76.2
Sp3g16050 Schrenkiella parvula HOM05D007021 ORTHO05D008916 9.3e-67 257.3 195 75.9
C05p48360 Brassica napus HOM05D007021 ORTHO05D008916 6.7e-65 251.1 192 76.6
BcaC05g28735 Brassica carinata HOM05D007021 ORTHO05D008916 2.8e-63 245.7 192 81.8
A05p31870 Brassica napus HOM05D007021 ORTHO05D008916 2.8e-63 245.7 192 81.2
BolC5t33573H Brassica oleracea HOM05D007021 ORTHO05D008916 2.8e-63 245.7 192 81.8
BraA05t22019Z Brassica rapa HOM05D007021 ORTHO05D008916 2.8e-63 245.7 192 81.2
BcaB06g25855 Brassica carinata HOM05D007021 ORTHO05D008916 9.3e-59 230.7 192 70.8
Aa31LG8G4800 Aethionema arabicum HOM05D007021 ORTHO05D008916 3.3e-56 222.2 189 65.6
THA.LOC104821829 Tarenaya hassleriana HOM05D007021 ORTHO05D008916 9.0e-46 187.6 189 58.2
QL10p030610 Quercus lobata HOM05D007021 ORTHO05D008916 9.3e-43 177.6 207 53.6
Sabra15G0029900 Salix brachista HOM05D007021 ORTHO05D008916 9.3e-43 177.6 106 83.0
Lj4g0002555 Lotus japonicus HOM05D007021 ORTHO05D008916 1.2e-42 177.2 106 83.0
CANSAT80G0297 Cannabis sativa HOM05D007021 ORTHO05D008916 1.6e-42 176.8 104 84.6
CANSAT80G1746 Cannabis sativa HOM05D007021 ORTHO05D008916 1.6e-42 176.8 104 84.6
Psat7g001280 Pisum sativum HOM05D007021 ORTHO05D008916 1.6e-42 176.8 106 83.0
CAN.G159.4 Capsicum annuum HOM05D007021 ORTHO05D008916 2.1e-42 176.4 107 81.3
Solyc05g006440.4 Solanum lycopersicum HOM05D007021 ORTHO05D008916 2.1e-42 176.4 107 81.3
Potri.015G036500 Populus trichocarpa HOM05D007021 ORTHO05D008916 2.7e-42 176.0 106 83.0
FAN04G2374 Fragaria x ananassa HOM05D007021 ORTHO05D008916 3.6e-42 175.6 105 84.8
PGSC0003DMG400022612 Solanum tuberosum HOM05D007021 ORTHO05D008916 3.6e-42 175.6 107 80.4
FvH4_5g17480 Fragaria vesca HOM05D007021 ORTHO05D008916 4.6e-42 175.3 105 83.8
FAN08G1321 Fragaria x ananassa HOM05D007021 ORTHO05D008916 4.6e-42 175.3 105 83.8
FAN18G1853 Fragaria x ananassa HOM05D007021 ORTHO05D008916 4.6e-42 175.3 105 83.8
Lalb_Chr05g0221591 Lupinus albus HOM05D007021 ORTHO05D008916 6.1e-42 174.9 106 82.1
Sopen05g002370 Solanum pennellii HOM05D007021 ORTHO05D008916 6.1e-42 174.9 107 80.4
Thecc.03G058600 Theobroma cacao HOM05D007021 ORTHO05D008916 6.1e-42 174.9 104 83.7
HanXRQChr15g0486591 Helianthus annuus HOM05D007021 ORTHO05D008916 1.0e-41 174.1 103 84.5
Cc04_g06110 Coffea canephora HOM05D007021 ORTHO05D008916 1.3e-41 173.7 106 81.1
Migut.I00268 Erythranthe guttata HOM05D007021 ORTHO05D008916 1.3e-41 173.7 107 82.2
MD06G1228200 Malus domestica HOM05D007021 ORTHO05D008916 1.3e-41 173.7 106 80.2
Manes.06G004800 Manihot esculenta HOM05D007021 ORTHO05D008916 1.3e-41 173.7 107 81.3
PGR044G2095 Punica granatum HOM05D007021 ORTHO05D008916 1.3e-41 173.7 106 83.0
RcHm_v2.0_Chr7g0178211 Rosa chinensis HOM05D007021 ORTHO05D008916 1.3e-41 173.7 105 82.9
FAN13G1201 Fragaria x ananassa HOM05D007021 ORTHO05D008916 1.8e-41 173.3 105 83.8
Glyma.05G246900 Glycine max HOM05D007021 ORTHO05D008916 1.8e-41 173.3 106 81.1
Glyma.08G055300 Glycine max HOM05D007021 ORTHO05D008916 1.8e-41 173.3 106 81.1
Nitab4.5_0002312g0020 Nicotiana tabacum HOM05D007021 ORTHO05D008916 1.8e-41 173.3 107 80.4
Nitab4.5_0004119g0020 Nicotiana tabacum HOM05D007021 ORTHO05D008916 1.8e-41 173.3 107 80.4
GSVIVG01008459001 Vitis vinifera HOM05D007021 ORTHO05D008916 1.8e-41 173.3 106 81.1
CSS0017706 Camellia sinensis var. sinensis HOM05D007021 ORTHO05D008916 2.3e-41 172.9 107 80.4
Atru.chr9.1670 Acer truncatum HOM05D007021 ORTHO05D008916 3.0e-41 172.6 106 78.3
arahy.Tifrunner.gnm1.ann1.I2I16V Arachis hypogaea HOM05D007021 ORTHO05D008916 3.0e-41 172.6 106 80.2
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 3.9e-41 172.2 107 79.4
Aqoxy1G00082 Aquilegia oxysepala HOM05D007021 ORTHO05D008916 3.9e-41 172.2 104 81.7
Cpa.g.sc3.381 Carica papaya HOM05D007021 ORTHO05D008916 5.1e-41 171.8 107 77.6
Dinv18013 Davidia involucrata HOM05D007021 ORTHO05D008916 5.1e-41 171.8 106 80.2
Oeu046158.1 Olea europaea HOM05D007021 ORTHO05D008916 5.1e-41 171.8 106 81.1
Gohir.D09G170185 Gossypium hirsutum HOM05D007021 ORTHO05D008916 6.7e-41 171.4 106 79.2
Gorai.006G191500 Gossypium raimondii HOM05D007021 ORTHO05D008916 6.7e-41 171.4 106 79.2
Gohir.A09G174900 Gossypium hirsutum HOM05D007021 ORTHO05D008916 8.7e-41 171.0 173 55.5
arahy.Tifrunner.gnm1.ann1.2FQ1SS Arachis hypogaea HOM05D007021 ORTHO05D008916 1.1e-40 170.6 105 80.0
ECA232G1431 Erigeron canadensis HOM05D000006 ORTHO05D000091 1.1e-40 170.6 103 82.5
CiPaw.16G096000 Carya illinoinensis HOM05D007021 ORTHO05D008916 1.9e-40 169.9 105 78.1
Prupe.5G234700 Prunus persica HOM05D007021 ORTHO05D008916 1.9e-40 169.9 106 77.4
Rhsim12G0138000 Rhododendron simsii HOM05D007021 ORTHO05D008916 1.9e-40 169.9 104 80.8
Hma1.2p1_0163F.1_g073000 Hydrangea macrophylla HOM05D007021 ORTHO05D008916 2.5e-40 169.5 107 78.5
Lj9A418T22 Lonicera japonica HOM05D007021 ORTHO05D008916 2.5e-40 169.5 106 79.2
Cfa019639 Carpinus fangiana HOM05D007021 ORTHO05D008916 3.3e-40 169.1 106 77.4
Ciclev10009503m.g Citrus clementina HOM05D007021 ORTHO05D008916 3.3e-40 169.1 107 78.5
COL.COLO4_28897 Corchorus olitorius HOM05D007021 ORTHO05D008916 3.3e-40 169.1 106 79.2
Os01g0805200 Oryza sativa ssp. japonica HOM05D007021 ORTHO05D008916 3.3e-40 169.1 107 78.5
HPP92_019433 Vanilla planifolia HOM05D007021 ORTHO05D008916 4.3e-40 168.7 103 80.6
ClCG06G014200 Citrullus lanatus HOM05D007021 ORTHO05D008916 5.7e-40 168.3 106 78.3
CsaV3_1G004470 Cucumis sativus L. HOM05D007021 ORTHO05D008916 5.7e-40 168.3 106 78.3
Medtr8g107430 Medicago truncatula HOM05D007021 ORTHO05D008916 7.4e-40 167.9 106 78.3
TPR.G1394 Trifolium pratense HOM05D007021 ORTHO05D008916 7.4e-40 167.9 105 79.0
VMungo0251G3404 Vigna mungo HOM05D007021 ORTHO05D008916 7.4e-40 167.9 106 78.3
Gorai.003G035100 Gossypium raimondii HOM05D007021 ORTHO05D008916 1.6e-39 166.8 106 78.3
TWI81G0868 Tripterygium wilfordii HOM05D007021 ORTHO05D008916 2.2e-39 166.4 103 79.6
MBI13_g41749_MAGBIO Magnolia biondii HOM05D007021 ORTHO05D008916 2.8e-39 166.0 106 75.5
Sed0001257 Sechium edule HOM05D007021 ORTHO05D008916 2.8e-39 166.0 106 77.4
TAR623G0728 Trochodendron aralioides HOM05D007021 ORTHO05D008916 2.8e-39 166.0 106 76.4
Zm00001eb150510 Zea mays HOM05D007021 ORTHO05D008916 2.8e-39 166.0 106 76.4
MELO3C017374.2 Cucumis melo HOM05D007021 ORTHO05D008916 4.8e-39 165.2 106 77.4
Eucgr.K02276 Eucalyptus grandis HOM05D007021 ORTHO05D008916 4.8e-39 165.2 106 78.3
Gorai.004G090100 Gossypium raimondii HOM05D007021 ORTHO05D008916 4.8e-39 165.2 106 76.4
Sc04g0004860 Simmondsia chinensis HOM05D007021 ORTHO05D008916 4.8e-39 165.2 102 79.4
Gohir.D03G033500 Gossypium hirsutum HOM05D007021 ORTHO05D008916 6.3e-39 164.9 106 76.4
Nn7g37125 Nelumbo nucifera HOM05D007021 ORTHO05D008916 6.3e-39 164.9 106 76.4
MSTRG.11303 Avicennia marina HOM05D007021 ORTHO05D008916 8.2e-39 164.5 106 75.5
Gohir.D08G085600 Gossypium hirsutum HOM05D007021 ORTHO05D008916 8.2e-39 164.5 106 76.4
Lsat_1_v5_gn_8_115881 Lactuca sativa HOM05D007021 ORTHO05D008916 1.1e-38 164.1 103 78.6
unitig_899.g15339 Utricularia gibba HOM05D007021 ORTHO05D008916 1.4e-38 163.7 106 76.4
Phvul.002G331000 Phaseolus vulgaris HOM05D007021 ORTHO05D008916 3.1e-38 162.5 106 72.6
Hund08707 Selenicereus undatus HOM05D007021 ORTHO05D008916 3.1e-38 162.5 107 72.0
PSO384G2008 Papaver somniferum HOM05D007021 ORTHO05D008916 4.1e-38 162.2 102 78.4
PSO339G6055 Papaver somniferum HOM05D007021 ORTHO05D008916 9.1e-38 161.0 102 77.5
SEGI_41594 Sequoiadendron giganteum HOM05D007021 ORTHO05D008916 1.5e-37 160.2 108 72.2
Pp3c5_23310 Physcomitrium patens HOM05D007021 ORTHO05D008916 2.6e-37 159.5 107 70.1
ATR1096G089 Amborella trichopoda HOM05D007021 ORTHO05D008916 4.5e-37 158.7 106 72.6
Haze_18883 Corylus avellana HOM05D007021 ORTHO05D008916 5.9e-37 158.3 125 65.6
CDE04G1339 Ceratophyllum demersum HOM05D000015 ORTHO05D002445 2.2e-36 156.4 95 77.9
AagrBONN_evm.TU.Sc2ySwM_117.710 Anthoceros agrestis HOM05D007021 ORTHO05D008916 1.4e-35 153.7 107 69.2
AagrBONN_evm.TU.Sc2ySwM_340.579 Anthoceros agrestis HOM05D007021 ORTHO05D008916 1.4e-35 153.7 107 69.2
Mapoly0023s0040 Marchantia polymorpha HOM05D007021 ORTHO05D008916 5.5e-35 151.8 103 71.8
EL10Ac8g19152 Beta vulgaris HOM05D007021 ORTHO05D008916 1.2e-34 150.6 105 69.5
SMO353G0175 Selaginella moellendorffii HOM05D007021 ORTHO05D008916 3.9e-33 145.6 102 67.6
CDE07G1635 Ceratophyllum demersum HOM05D007021 ORTHO05D008916 1.1e-30 137.5 83 77.1
CBR_g48186 Chara braunii HOM05D007021 ORTHO05D008916 4.5e-29 132.1 108 58.3
Gohir.1Z049463 Gossypium hirsutum HOM05D007021 ORTHO05D008916 1.1e-27 127.5 106 66.0
DCAR_014390 Daucus carota HOM05D007021 ORTHO05D008916 2.5e-27 126.3 78 80.8
Peaxi162Scf00828g00016 Petunia axillaris HOM05D007021 ORTHO05D008916 7.2e-27 124.8 78 78.2
Duzib068G0088 Durio zibethinus HOM05D007021 ORTHO05D008916 1.6e-26 123.6 78 78.2
Cre01.g000850 Chlamydomonas reinhardtii HOM05D007021 ORTHO05D008916 1.0e-25 120.9 104 57.7
AUR62025165 Chenopodium quinoa HOM05D007021 ORTHO05D008916 5.7e-24 115.2 75 73.3
AUR62029014 Chenopodium quinoa HOM05D007021 ORTHO05D008916 5.7e-24 115.2 75 73.3
MD14G1237400 Malus domestica HOM05D007021 ORTHO05D008916 4.7e-18 95.5 53 83.0
MCO16G182 Micromonas commoda HOM05D007021 ORTHO05D008916 1.0e-17 94.4 79 59.5
Oeu010907.1 Olea europaea HOM05D007021 ORTHO05D008916 1.0e-17 94.4 53 83.0
PRCOL_00000692 Prasinoderma coloniale HOM05D007021 ORTHO05D008916 4.4e-16 89.0 104 45.2


User provided reference genes

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