Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G17900 Arabidopsis thaliana HOM05D004054 ORTHO05D004945 0.0e+00 1642.9 839 100.0
AL3G31070 Arabidopsis lyrata HOM05D004054 ORTHO05D004945 0.0e+00 1582.8 839 96.8
Carub.0003s1763 Capsella rubella HOM05D004054 ORTHO05D004945 0.0e+00 1525.8 839 93.3
Sp3g16020 Schrenkiella parvula HOM05D004054 ORTHO05D004945 0.0e+00 1484.5 849 90.5
CARHR093230 Cardamine hirsuta HOM05D004054 ORTHO05D004945 0.0e+00 1483.4 839 90.3
Thhalv10020058m.g Eutrema salsugineum HOM05D004054 ORTHO05D004945 0.0e+00 1470.7 849 89.9
Aa31LG8G4770 Aethionema arabicum HOM05D004054 ORTHO05D004945 0.0e+00 1375.5 900 79.8
BraA03t13202Z Brassica rapa HOM05D004054 ORTHO05D004945 0.0e+00 1350.5 845 85.0
C03p49280 Brassica napus HOM05D004054 ORTHO05D004945 0.0e+00 1349.3 842 85.6
BcaB04g20809 Brassica carinata HOM05D004054 ORTHO05D004945 0.0e+00 1348.6 850 84.6
BolC3t17216H Brassica oleracea HOM05D004054 ORTHO05D004945 0.0e+00 1328.2 842 84.6
C01p46250 Brassica napus HOM05D004054 ORTHO05D004945 0.0e+00 1315.4 852 82.0
BcaC09g48754 Brassica carinata HOM05D004054 ORTHO05D004945 0.0e+00 1314.7 852 82.0
BolC1t04586H Brassica oleracea HOM05D004054 ORTHO05D004945 0.0e+00 1310.8 852 81.8
A01p36490 Brassica napus HOM05D004054 ORTHO05D004945 0.0e+00 1309.3 849 81.4
BcaB04g18970 Brassica carinata HOM05D004054 ORTHO05D004945 0.0e+00 1287.7 843 82.2
BraA01t03713Z Brassica rapa HOM05D004054 ORTHO05D004945 0.0e+00 1286.9 853 80.3
BcaC01g03722 Brassica carinata HOM05D004054 ORTHO05D004945 0.0e+00 1238.0 844 80.1
THA.LOC104820344 Tarenaya hassleriana HOM05D004054 ORTHO05D004945 0.0e+00 1219.5 854 74.0
A03p40440 Brassica napus HOM05D004054 ORTHO05D004945 0.0e+00 1180.2 717 86.5
Ciclev10030693m.g Citrus clementina HOM05D004054 ORTHO05D004945 1.8e-276 956.1 864 59.6
Cfa009037 Carpinus fangiana HOM05D004054 ORTHO05D004945 1.0e-274 950.3 872 59.9
Thecc.02G355300 Theobroma cacao HOM05D004054 ORTHO05D004945 3.8e-274 948.3 857 60.0
QL03p065666 Quercus lobata HOM05D004054 ORTHO05D004945 1.6e-272 943.0 869 59.7
TAR362G0462 Trochodendron aralioides HOM05D004054 ORTHO05D004945 1.3e-266 923.3 882 58.3
MD13G1079000 Malus domestica HOM05D004054 ORTHO05D004945 3.8e-266 921.8 856 59.9
Prupe.1G267800 Prunus persica HOM05D004054 ORTHO05D004945 2.8e-264 915.6 876 59.0
COL.COLO4_07923 Corchorus olitorius HOM05D004054 ORTHO05D004945 6.1e-264 914.4 864 57.9
Potri.010G033900 Populus trichocarpa HOM05D004054 ORTHO05D004945 8.9e-263 910.6 855 60.2
Gorai.013G077900 Gossypium raimondii HOM05D004054 ORTHO05D004945 3.4e-262 908.7 866 57.0
GSVIVG01036940001 Vitis vinifera HOM05D004054 ORTHO05D004945 4.4e-262 908.3 854 58.3
Gohir.A13G052300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 7.5e-262 907.5 866 56.8
RcHm_v2.0_Chr1g0353921 Rosa chinensis HOM05D004054 ORTHO05D004945 9.8e-262 907.1 871 58.1
Duzib268G1532 Durio zibethinus HOM05D004054 ORTHO05D004945 1.7e-261 906.4 875 57.5
RcHm_v2.0_Chr4g0440641 Rosa chinensis HOM05D004054 ORTHO05D004945 8.3e-261 904.0 860 58.7
Rhsim01G0215700 Rhododendron simsii HOM05D004054 ORTHO05D004945 4.1e-260 901.7 871 57.6
Actinidia05393 Actinidia chinensis HOM05D004054 ORTHO05D004945 9.2e-260 900.6 864 58.6
Haze_12066 Corylus avellana HOM05D004054 ORTHO05D004945 9.2e-260 900.6 974 53.2
TWI36G0714 Tripterygium wilfordii HOM05D004054 ORTHO05D004945 9.2e-260 900.6 856 57.9
Gohir.D13G068400 Gossypium hirsutum HOM05D004054 ORTHO05D004945 1.6e-259 899.8 865 56.1
RcHm_v2.0_Chr1g0331881 Rosa chinensis HOM05D004054 ORTHO05D004945 1.3e-258 896.7 873 57.8
FAN12G3951 Fragaria x ananassa HOM05D004054 ORTHO05D004945 1.7e-258 896.3 870 57.5
FvH4_4g31960 Fragaria vesca HOM05D004054 ORTHO05D004945 2.3e-258 896.0 870 57.2
FAN22G1878 Fragaria x ananassa HOM05D004054 ORTHO05D004945 4.3e-257 891.7 884 57.0
FAN17G1509 Fragaria x ananassa HOM05D004054 ORTHO05D004945 5.6e-257 891.3 875 57.3
CsaV3_5G032370 Cucumis sativus L. HOM05D004054 ORTHO05D004945 7.3e-257 891.0 858 57.0
Atru.chr11.1851 Acer truncatum HOM05D004054 ORTHO05D004945 6.8e-255 884.4 870 57.5
FAN07G1439 Fragaria x ananassa HOM05D004054 ORTHO05D004945 7.5e-254 880.9 886 56.7
Sabra10G0030700 Salix brachista HOM05D004054 ORTHO05D004945 9.8e-254 880.6 911 56.5
ClCG05G024580 Citrullus lanatus HOM05D004054 ORTHO05D004945 8.3e-253 877.5 879 55.6
Sed0026408 Sechium edule HOM05D004054 ORTHO05D004945 2.7e-251 872.5 860 55.9
GSVIVG01020074001 Vitis vinifera HOM05D004054 ORTHO05D004945 1.3e-250 870.2 877 56.0
MBI11_g00106_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 8.6e-250 867.5 880 54.9
MD16G1078700 Malus domestica HOM05D004054 ORTHO05D004945 1.2e-248 863.6 769 61.4
Ca_22853_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 2.3e-247 859.4 869 55.7
arahy.Tifrunner.gnm1.ann1.K6PP8H Arachis hypogaea HOM05D004054 ORTHO05D004945 8.9e-247 857.4 868 56.6
Gorai.008G182900 Gossypium raimondii HOM05D004054 ORTHO05D004945 2.0e-246 856.3 865 55.1
Glyma.18G126000 Glycine max HOM05D004054 ORTHO05D004945 5.8e-246 854.7 829 57.5
Aqoxy5G00175 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 3.7e-245 852.0 869 56.0
MBI17_g39912_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 4.9e-245 851.7 865 54.6
Duzib248G1634 Durio zibethinus HOM05D004054 ORTHO05D004945 6.4e-245 851.3 866 55.3
MELO3C012068.2 Cucumis melo HOM05D004054 ORTHO05D004945 8.3e-245 850.9 845 56.1
Gohir.D12G170300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 3.2e-244 849.0 832 56.0
Glyma.08G296300 Glycine max HOM05D004054 ORTHO05D004945 4.6e-243 845.1 868 56.2
Sc11g0001680 Simmondsia chinensis HOM05D004054 ORTHO05D004945 2.3e-242 842.8 865 54.5
Lj4g0012636 Lotus japonicus HOM05D004054 ORTHO05D004945 5.1e-242 841.6 866 55.2
PSO832G3945 Papaver somniferum HOM05D004054 ORTHO05D004945 6.6e-242 841.3 888 55.0
VMungo0251G1664 Vigna mungo HOM05D004054 ORTHO05D004945 1.2e-240 837.0 874 55.4
Medtr8g469270 Medicago truncatula HOM05D004054 ORTHO05D004945 1.1e-239 833.9 877 55.2
Peaxi162Scf00209g00326 Petunia axillaris HOM05D004054 ORTHO05D004945 4.0e-239 832.0 894 53.0
TPR.G33257 Trifolium pratense HOM05D004054 ORTHO05D004945 8.9e-239 830.9 873 54.1
Lalb_Chr16g0392581 Lupinus albus HOM05D004054 ORTHO05D004945 1.2e-238 830.5 884 54.4
Eucgr.B03410 Eucalyptus grandis HOM05D004054 ORTHO05D004945 1.5e-238 830.1 865 54.3
Phvul.003G069800 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 5.8e-238 828.2 880 54.5
Sopen05g002990 Solanum pennellii HOM05D004054 ORTHO05D004945 3.8e-237 825.5 868 53.3
CSS0048330 Camellia sinensis var. sinensis HOM05D004054 ORTHO05D004945 8.4e-237 824.3 859 55.1
Psat4g132120 Pisum sativum HOM05D004054 ORTHO05D004945 2.7e-235 819.3 872 53.4
Nitab4.5_0009649g0020 Nicotiana tabacum HOM05D004054 ORTHO05D004945 3.0e-234 815.8 844 54.3
vmacro07429 Vaccinium macrocarpon HOM05D004054 ORTHO05D004945 5.1e-234 815.1 943 51.2
Lsat_1_v5_gn_8_54080 Lactuca sativa HOM05D004054 ORTHO05D004945 1.5e-233 813.5 875 54.2
Manes.05G096500 Manihot esculenta HOM05D004054 ORTHO05D004945 1.5e-233 813.5 735 61.4
PGR102G2139 Punica granatum HOM05D004054 ORTHO05D004945 2.1e-232 809.7 880 53.9
Hma1.2p1_1545F.1_g289900 Hydrangea macrophylla HOM05D004054 ORTHO05D004945 2.0e-230 803.1 753 58.6
PSO764G0096 Papaver somniferum HOM05D004054 ORTHO05D004945 1.7e-229 800.0 889 53.0
SGA_v2.0_scaffold302G47866 Striga asiatica HOM05D004054 ORTHO05D004945 2.2e-229 799.7 870 53.3
Cc11_g13490 Coffea canephora HOM05D004054 ORTHO05D004945 6.4e-229 798.1 842 53.4
Nitab4.5_0008717g0030 Nicotiana tabacum HOM05D004054 ORTHO05D004945 5.4e-228 795.0 844 53.6
SalBow2G0733 Salvia bowleyana HOM05D004054 ORTHO05D004945 1.3e-226 790.4 961 49.1
ECA247G4086 Erigeron canadensis HOM05D004054 ORTHO05D004945 1.9e-225 786.6 858 52.8
Psat2g124400 Pisum sativum HOM05D004054 ORTHO05D004945 1.3e-224 783.9 859 51.5
DCAR_027382 Daucus carota HOM05D004054 ORTHO05D004945 1.4e-223 780.4 871 52.4
Dinv24955 Davidia involucrata HOM05D004054 ORTHO05D004945 2.0e-222 776.5 720 59.0
Migut.L01344 Erythranthe guttata HOM05D004054 ORTHO05D004945 5.8e-222 775.0 869 52.2
MSTRG.671 Avicennia marina HOM05D004054 ORTHO05D004945 6.4e-221 771.5 870 51.0
Oeu011693.1 Olea europaea HOM05D004054 ORTHO05D004945 1.2e-219 767.3 769 55.7
Ca_04741_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 7.9e-219 764.6 836 52.4
SalBow2G2854 Salvia bowleyana HOM05D004054 ORTHO05D004945 6.7e-218 761.5 858 51.3
Hund25271 Selenicereus undatus HOM05D004054 ORTHO05D004945 8.7e-218 761.1 835 52.3
AUR62026447 Chenopodium quinoa HOM05D004054 ORTHO05D004945 1.9e-217 760.0 850 52.4
Glyma.02G021900 Glycine max HOM05D004054 ORTHO05D004945 5.6e-217 758.4 861 51.3
Lalb_Chr09g0335271 Lupinus albus HOM05D004054 ORTHO05D004945 4.8e-216 755.4 786 56.5
HanXRQChr12g0369801 Helianthus annuus HOM05D004054 ORTHO05D004945 9.0e-215 751.1 869 52.0
Nn3g19739 Nelumbo nucifera HOM05D004054 ORTHO05D004945 2.6e-214 749.6 729 56.8
AUR62026254 Chenopodium quinoa HOM05D004054 ORTHO05D004945 1.9e-209 733.4 846 51.3
Medtr5g038440 Medicago truncatula HOM05D004054 ORTHO05D004945 1.3e-208 730.7 865 50.5
Oeu028539.1 Olea europaea HOM05D004054 ORTHO05D004945 1.4e-207 727.2 907 49.6
TPR.G13762 Trifolium pratense HOM05D004054 ORTHO05D004945 6.9e-207 724.9 786 53.1
ATR0564G248 Amborella trichopoda HOM05D004054 ORTHO05D004945 1.9e-204 716.8 878 48.5
CDE09G0195 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 1.6e-203 713.8 880 47.8
HPP92_011033 Vanilla planifolia HOM05D004054 ORTHO05D004945 1.4e-199 700.7 842 47.5
Lj2g0020807 Lotus japonicus HOM05D004054 ORTHO05D004945 5.9e-198 695.3 720 54.0
Cpa.g.sc5.276 Carica papaya HOM05D004054 ORTHO05D004945 1.1e-196 691.0 550 66.0
Lalb_Chr17g0340361 Lupinus albus HOM05D004054 ORTHO05D004945 1.4e-196 690.6 732 53.8
Hund05913 Selenicereus undatus HOM05D004054 ORTHO05D004945 2.2e-189 666.8 812 48.8
Solyc05g007030.4 Solanum lycopersicum HOM05D004054 ORTHO05D004945 9.4e-188 661.4 597 59.3
arahy.Tifrunner.gnm1.ann1.S53SYG Arachis hypogaea HOM05D004054 ORTHO05D004945 3.9e-186 656.0 857 46.3
EL10Ac6g13147 Beta vulgaris HOM05D004054 ORTHO05D004945 6.3e-184 648.7 860 47.3
Zm00001eb409770 Zea mays HOM05D004054 ORTHO05D004945 2.3e-178 630.2 861 47.0
arahy.Tifrunner.gnm1.ann1.B2D650 Arachis hypogaea HOM05D004054 ORTHO05D004945 2.0e-169 600.5 860 44.2
Gohir.A12G166800 Gossypium hirsutum HOM05D004054 ORTHO05D004945 2.6e-169 600.1 548 59.7
Nn1g02896 Nelumbo nucifera HOM05D004054 ORTHO05D004945 4.5e-166 589.3 871 44.0
SEGI_39580 Sequoiadendron giganteum HOM05D004054 ORTHO05D004945 2.1e-163 580.5 917 41.3
CiPaw.06G080700 Carya illinoinensis HOM05D004054 ORTHO05D004945 2.3e-157 560.5 453 66.0
VMungo1215G1372 Vigna mungo HOM05D004054 ORTHO05D004945 1.9e-156 557.4 1108 36.8
unitig_22.g6528 Utricularia gibba HOM05D004054 ORTHO05D004945 5.2e-154 549.3 877 42.5
Lsat_1_v5_gn_4_9281 Lactuca sativa HOM05D004054 ORTHO05D004945 2.6e-153 547.0 827 42.3
ECA234G1496 Erigeron canadensis HOM05D004054 ORTHO05D004945 3.4e-153 546.6 825 42.4
CDE02G2379 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 1.1e-151 541.6 719 44.1
HanXRQChr03g0092771 Helianthus annuus HOM05D004054 ORTHO05D004945 3.9e-141 506.5 745 43.2
Ah.03g132020 Amaranthus hybridus HOM05D004054 ORTHO05D004945 3.3e-132 476.9 585 49.9
Phvul.002G066700 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 3.4e-129 466.8 507 52.7
Mapoly0224s0002 Marchantia polymorpha HOM05D004054 ORTHO05D004945 1.0e-125 455.3 862 36.5
Zm00001eb066230 Zea mays HOM05D004054 ORTHO05D004945 3.4e-121 440.3 573 49.0
Pp3c16_680 Physcomitrium patens HOM05D004054 ORTHO05D004945 5.3e-106 389.8 802 35.4
SMO119G0368 Selaginella moellendorffii HOM05D004054 ORTHO05D004945 4.9e-104 383.3 627 37.0
unitig_8.g3947 Utricularia gibba HOM05D004054 ORTHO05D004945 7.9e-102 375.9 546 43.0
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 3.7e-91 340.5 422 47.6
AagrBONN_evm.TU.Sc2ySwM_228.4114 Anthoceros agrestis HOM05D004054 ORTHO05D004945 1.1e-90 339.0 709 33.3
CiPaw.06G080600 Carya illinoinensis HOM05D004054 ORTHO05D004945 9.0e-82 309.3 371 51.8
C02p33030 Brassica napus HOM05D004054 ORTHO05D004945 8.5e-80 302.8 380 50.8
C03p36410 Brassica napus HOM05D004054 ORTHO05D004945 2.3e-77 294.7 381 51.4
BolC3t15954H Brassica oleracea HOM05D004054 ORTHO05D004945 2.3e-77 294.7 381 51.4
Cpa.g.sc5.277 Carica papaya HOM05D004054 ORTHO05D004945 7.4e-76 289.7 318 52.2
Potri.008G194566 Populus trichocarpa HOM05D004054 ORTHO05D004945 2.8e-67 261.2 258 58.1
Phvul.002G066500 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 1.8e-66 258.5 278 54.7
A05p04500 Brassica napus HOM05D004054 ORTHO05D004945 7.2e-55 219.9 176 66.5
C03p62480 Brassica napus HOM05D004054 ORTHO05D004945 7.2e-55 219.9 176 66.5
Potri.008G194632 Populus trichocarpa HOM05D004054 ORTHO05D004945 1.4e-50 205.7 196 61.2
Gohir.A12G166900 Gossypium hirsutum HOM05D004054 ORTHO05D004945 4.1e-50 204.1 252 47.2
C08p43480 Brassica napus HOM05D004054 ORTHO05D004945 6.6e-40 170.2 133 69.2
BolC3t18505H Brassica oleracea HOM05D004054 ORTHO05D004945 1.9e-39 168.7 186 53.8
MSTRG.2359 Avicennia marina HOM05D004054 ORTHO05D004945 3.3e-39 167.9 170 55.3
C06p17170 Brassica napus HOM05D004054 ORTHO05D004945 1.4e-37 162.5 178 56.2
RcHm_v2.0_Chr1g0331861 Rosa chinensis HOM05D004054 ORTHO05D004945 5.4e-34 150.6 140 56.4
A01p41860 Brassica napus HOM05D004054 ORTHO05D004945 7.8e-33 146.7 139 58.3
BcaC08g44394 Brassica carinata HOM05D004054 ORTHO05D004945 3.0e-24 118.2 196 42.9
BolC2t11814H Brassica oleracea HOM05D004054 ORTHO05D004945 9.5e-23 113.2 143 49.7
A06p30220 Brassica napus HOM05D003604 ORTHO05D004110 1.2e-22 112.8 82 74.4
CBR_g39858 Chara braunii HOM05D004054 ORTHO05D009492 8.9e-21 106.7 339 28.9
PGSC0003DMG402017622 Solanum tuberosum HOM05D004054 ORTHO05D004945 5.1e-16 90.9 101 50.5
CAN.G793.43 Capsicum annuum HOM05D004054 ORTHO05D004945 4.3e-15 87.8 165 36.4
BcaC07g41060 Brassica carinata HOM05D011695 ORTHO05D017500 2.1e-14 85.5 89 58.4
C08p40590 Brassica napus HOM05D011695 ORTHO05D017500 2.1e-14 85.5 89 58.4
Lalb_Chr17g0340371 Lupinus albus HOM05D004054 ORTHO05D004945 2.1e-14 85.5 60 73.3
BcaC04g21302 Brassica carinata HOM05D011695 ORTHO05D017500 8.1e-14 83.6 89 56.2
C02p41390 Brassica napus HOM05D011695 ORTHO05D017500 1.4e-13 82.8 89 56.2
unitig_8.g3946 Utricularia gibba HOM05D004054 ORTHO05D004945 1.8e-13 82.4 182 34.6
BolC8t48037H Brassica oleracea HOM05D011695 ORTHO05D017500 1.5e-12 79.3 89 56.2
C09p61440 Brassica napus HOM05D011695 ORTHO05D017500 2.6e-12 78.6 89 56.2
C04p24100 Brassica napus HOM05D011695 ORTHO05D017500 5.8e-12 77.4 85 56.5
BolC3t17207H Brassica oleracea HOM05D004054 ORTHO05D004945 1.3e-11 76.3 41 85.4
CBR_g39856 Chara braunii HOM05D000019 ORTHO05D000353 4.9e-11 74.3 219 24.7
Lsat_1_v5_gn_3_52120 Lactuca sativa HOM05D004054 ORTHO05D004945 1.4e-10 72.8 63 54.0
C06p10280 Brassica napus HOM05D011797 ORTHO05D012335 2.4e-10 72.0 48 77.1
Lsat_1_v5_gn_7_73540 Lactuca sativa HOM05D004054 ORTHO05D004945 5.4e-10 70.9 58 55.2
C02p23800 Brassica napus HOM05D000787 ORTHO05D003730 1.0e-08 66.6 58 69.0
CBR_g39853 Chara braunii HOM05D000019 ORTHO05D000002 8.6e-08 63.5 105 38.1
Lsat_1_v5_gn_5_60100 Lactuca sativa HOM05D004054 ORTHO05D036438 8.6e-08 63.5 85 47.1
MBI09_g47007_MAGBIO Magnolia biondii HOM05D003023 ORTHO05D018021 1.5e-07 62.8 99 42.4


User provided reference genes

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