Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G17712 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 0.0e+00 1524.2 795 100.0
AT3G17740 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 0.0e+00 1465.3 778 98.5
AL3G30880 Arabidopsis lyrata HOM05D006302 ORTHO05D007960 0.0e+00 1362.8 783 91.8
Carub.0003s1747 Capsella rubella HOM05D006302 ORTHO05D007960 0.0e+00 1280.0 783 87.1
Thhalv10019937m.g Eutrema salsugineum HOM05D006302 ORTHO05D007960 0.0e+00 1244.2 778 84.2
Sp3g15860 Schrenkiella parvula HOM05D006302 ORTHO05D007960 0.0e+00 1233.8 778 83.7
C05p48650 Brassica napus HOM05D006302 ORTHO05D007960 0.0e+00 1158.7 779 79.8
BolC5t33600H Brassica oleracea HOM05D006302 ORTHO05D007960 0.0e+00 1158.7 779 79.8
Aa31LG8G4630 Aethionema arabicum HOM05D006302 ORTHO05D007960 0.0e+00 1138.6 819 75.9
BcaC05g28760 Brassica carinata HOM05D006302 ORTHO05D007960 0.0e+00 1130.5 780 79.1
BraA05t22040Z Brassica rapa HOM05D006302 ORTHO05D007960 1.5e-304 1049.3 780 74.4
A05p32110 Brassica napus HOM05D006302 ORTHO05D007960 2.1e-293 1012.3 624 84.6
THA.LOC104821822 Tarenaya hassleriana HOM05D006302 ORTHO05D007960 1.5e-280 969.5 783 67.6
Duzib084G0934 Durio zibethinus HOM05D006302 ORTHO05D007960 8.0e-205 718.0 755 54.2
Gorai.005G134900 Gossypium raimondii HOM05D006302 ORTHO05D007960 1.4e-204 717.2 786 52.3
TWI81G1078 Tripterygium wilfordii HOM05D006302 ORTHO05D007960 2.3e-204 716.5 788 53.6
TAR629G0371 Trochodendron aralioides HOM05D006302 ORTHO05D007960 1.5e-203 713.8 774 53.1
Gohir.D02G118900 Gossypium hirsutum HOM05D006302 ORTHO05D007960 2.6e-203 713.0 786 52.2
Thecc.03G067700 Theobroma cacao HOM05D006302 ORTHO05D007960 1.1e-201 707.6 797 51.8
Gohir.A03G090800 Gossypium hirsutum HOM05D006302 ORTHO05D007960 1.4e-201 707.2 785 52.2
Ciclev10018592m.g Citrus clementina HOM05D006302 ORTHO05D007960 4.1e-201 705.7 772 53.1
QL10p033145 Quercus lobata HOM05D006302 ORTHO05D007960 4.5e-200 702.2 782 53.1
GSVIVG01012939001 Vitis vinifera HOM05D006302 ORTHO05D007960 7.7e-200 701.4 777 51.9
CiPaw.15G150000 Carya illinoinensis HOM05D006302 ORTHO05D007960 1.7e-199 700.3 785 53.9
Nn4g24592 Nelumbo nucifera HOM05D006302 ORTHO05D007960 5.0e-199 698.7 792 52.9
Prupe.5G239800 Prunus persica HOM05D006302 ORTHO05D007960 8.6e-199 698.0 796 50.6
MD14G1242200 Malus domestica HOM05D006302 ORTHO05D007960 3.3e-198 696.0 800 50.5
MELO3C002158.2 Cucumis melo HOM05D006302 ORTHO05D007960 4.7e-197 692.2 781 51.3
CsaV3_1G007420 Cucumis sativus L. HOM05D006302 ORTHO05D007960 4.7e-197 692.2 782 51.9
PGR083G1118 Punica granatum HOM05D006302 ORTHO05D007960 4.7e-197 692.2 791 53.2
Rhsim09G0028600 Rhododendron simsii HOM05D006302 ORTHO05D007960 1.4e-196 690.6 789 51.8
ClCG01G014910 Citrullus lanatus HOM05D006302 ORTHO05D007960 2.6e-195 686.4 803 51.1
Dinv19314 Davidia involucrata HOM05D006302 ORTHO05D007960 7.5e-195 684.9 799 50.1
Atru.chr9.205 Acer truncatum HOM05D006302 ORTHO05D007960 6.3e-194 681.8 782 52.0
Sed0020457 Sechium edule HOM05D006302 ORTHO05D007960 5.4e-193 678.7 784 52.2
RcHm_v2.0_Chr7g0177661 Rosa chinensis HOM05D006302 ORTHO05D007960 7.0e-193 678.3 798 49.6
CSS0040809 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 9.2e-193 677.9 647 56.7
FAN04G1871 Fragaria x ananassa HOM05D006302 ORTHO05D007960 1.6e-192 677.2 777 51.9
Lalb_Chr14g0370421 Lupinus albus HOM05D006302 ORTHO05D007960 1.6e-192 677.2 772 49.9
Ca_23670_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 2.7e-192 676.4 771 50.5
FAN13G0246 Fragaria x ananassa HOM05D006302 ORTHO05D007960 5.9e-192 675.2 793 49.8
Glyma.16G219200 Glycine max HOM05D006302 ORTHO05D007960 1.7e-191 673.7 781 50.7
Potri.015G033300 Populus trichocarpa HOM05D006302 ORTHO05D007960 2.9e-191 672.9 769 51.8
Cc04_g09070 Coffea canephora HOM05D006302 ORTHO05D007960 6.6e-191 671.8 795 51.1
FAN18G4444 Fragaria x ananassa HOM05D006302 ORTHO05D007960 8.6e-191 671.4 807 49.4
Medtr4g016590 Medicago truncatula HOM05D006302 ORTHO05D007960 8.6e-191 671.4 787 51.1
Phvul.004G145200 Phaseolus vulgaris HOM05D006302 ORTHO05D007960 1.1e-190 671.0 775 51.4
Haze_18958 Corylus avellana HOM05D006302 ORTHO05D007960 2.5e-190 669.8 870 48.7
Eucgr.H00592 Eucalyptus grandis HOM05D006302 ORTHO05D007960 2.5e-190 669.8 778 51.7
FvH4_5g17940 Fragaria vesca HOM05D006302 ORTHO05D007960 3.3e-190 669.5 786 49.9
Ca_26696_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 4.3e-190 669.1 784 49.7
Solyc03g098160.3 Solanum lycopersicum HOM05D006302 ORTHO05D007960 5.6e-190 668.7 785 50.3
Sabra15G0027400 Salix brachista HOM05D006302 ORTHO05D007960 1.2e-189 667.5 793 50.7
Sopen03g028860 Solanum pennellii HOM05D006302 ORTHO05D007960 1.2e-189 667.5 785 50.1
arahy.Tifrunner.gnm1.ann1.2W4JQ8 Arachis hypogaea HOM05D006302 ORTHO05D007960 1.6e-189 667.2 793 51.2
Manes.06G000900 Manihot esculenta HOM05D006302 ORTHO05D007960 2.8e-189 666.4 801 50.6
DCAR_010206 Daucus carota HOM05D006302 ORTHO05D007960 8.0e-189 664.8 789 51.7
TPR.G28992 Trifolium pratense HOM05D006302 ORTHO05D007960 8.9e-188 661.4 796 48.7
FAN08G1906 Fragaria x ananassa HOM05D006302 ORTHO05D007960 4.4e-187 659.1 788 49.0
Nitab4.5_0005200g0040 Nicotiana tabacum HOM05D006302 ORTHO05D007960 4.4e-187 659.1 794 49.6
Psat1g124600 Pisum sativum HOM05D006302 ORTHO05D007960 9.8e-187 657.9 800 48.9
CAN.G637.21 Capsicum annuum HOM05D006302 ORTHO05D007960 2.2e-186 656.8 784 49.7
arahy.Tifrunner.gnm1.ann1.YU9TRY Arachis hypogaea HOM05D006302 ORTHO05D007960 4.9e-186 655.6 829 49.0
vmacro22676 Vaccinium macrocarpon HOM05D006302 ORTHO05D007960 3.2e-185 652.9 848 47.3
Actinidia34644 Actinidia chinensis HOM05D006302 ORTHO05D007960 7.0e-185 651.7 796 49.2
CSS0030577 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 7.0e-185 651.7 649 55.6
Lj9C414G14 Lonicera japonica HOM05D006302 ORTHO05D007960 7.0e-185 651.7 623 56.8
Nitab4.5_0001180g0010 Nicotiana tabacum HOM05D006302 ORTHO05D007960 6.0e-184 648.7 788 48.7
PSO063G0294 Papaver somniferum HOM05D006302 ORTHO05D007960 1.3e-183 647.5 783 50.2
Lj2g0026336 Lotus japonicus HOM05D006302 ORTHO05D007960 3.0e-183 646.4 776 48.1
VMungo0464G0980 Vigna mungo HOM05D006302 ORTHO05D007960 3.0e-183 646.4 776 50.0
MSTRG.23195 Avicennia marina HOM05D006302 ORTHO05D007960 3.9e-183 646.0 808 47.2
SalBow5G5312 Salvia bowleyana HOM05D006302 ORTHO05D007960 4.4e-179 632.5 776 48.5
SalBow5G5149 Salvia bowleyana HOM05D006302 ORTHO05D007960 5.8e-179 632.1 771 48.5
Migut.O00235 Erythranthe guttata HOM05D006302 ORTHO05D007960 7.5e-179 631.7 795 47.2
AUR62034018 Chenopodium quinoa HOM05D006302 ORTHO05D007960 7.1e-177 625.2 766 48.3
EL10Ac8g19491 Beta vulgaris HOM05D006302 ORTHO05D007960 3.5e-176 622.9 765 48.9
C05p48600 Brassica napus HOM05D006302 ORTHO05D007960 7.8e-176 621.7 428 78.7
CARHR093080 Cardamine hirsuta HOM05D006302 ORTHO05D007960 3.0e-175 619.8 364 87.1
ECA238G1211 Erigeron canadensis HOM05D006302 ORTHO05D007960 4.3e-174 615.9 649 52.4
Ca_05032_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 7.3e-174 615.1 634 53.0
Ca_22760_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 7.3e-174 615.1 634 53.0
HanXRQChr01g0002621 Helianthus annuus HOM05D006302 ORTHO05D007960 2.8e-173 613.2 771 47.2
Lsat_1_v5_gn_2_15380 Lactuca sativa HOM05D006302 ORTHO05D007960 6.2e-173 612.1 788 47.2
Oeu060652.1 Olea europaea HOM05D006302 ORTHO05D007960 1.3e-170 604.4 787 47.5
Peaxi162Scf00171g00631 Petunia axillaris HOM05D006302 ORTHO05D007960 2.8e-165 586.6 785 46.9
SGA_v2.0_scaffold90G27777 Striga asiatica HOM05D006302 ORTHO05D007960 4.7e-165 585.9 828 45.3
Zm00001eb256430 Zea mays HOM05D006302 ORTHO05D007960 8.1e-165 585.1 775 44.0
SHI19119 Sapria himalayana HOM05D006302 ORTHO05D007960 8.4e-162 575.1 784 45.7
COL.COLO4_09239 Corchorus olitorius HOM05D006302 ORTHO05D007960 1.0e-159 568.2 644 50.0
CDE07G1110 Ceratophyllum demersum HOM05D006302 ORTHO05D007960 2.4e-156 557.0 762 43.7
ATR0598G116 Amborella trichopoda HOM05D006302 ORTHO05D007960 5.1e-151 539.3 743 45.1
Cpa.g.sc7.123 Carica papaya HOM05D006302 ORTHO05D007960 3.3e-150 536.6 488 57.8
HPP92_002770 Vanilla planifolia HOM05D006302 ORTHO05D007960 3.3e-150 536.6 787 43.2
Os02g0772500 Oryza sativa ssp. japonica HOM05D006302 ORTHO05D007960 1.6e-149 534.3 765 44.4
SEGI_33145 Sequoiadendron giganteum HOM05D006302 ORTHO05D007960 1.9e-134 484.2 801 40.2
unitig_22.g5442 Utricularia gibba HOM05D006302 ORTHO05D007960 6.3e-109 399.4 778 35.7
AagrBONN_evm.TU.Sc2ySwM_362.1719 Anthoceros agrestis HOM05D006302 ORTHO05D007960 1.6e-99 368.2 777 34.4
SMO340G0100 Selaginella moellendorffii HOM05D006302 ORTHO05D007960 4.8e-93 346.7 752 32.2
Sc10g0008940 Simmondsia chinensis HOM05D006302 ORTHO05D007960 3.8e-90 337.0 347 54.2
Mapoly0172s0015 Marchantia polymorpha HOM05D006302 ORTHO05D007960 1.1e-89 335.5 575 35.5
Pp3c9_1610 Physcomitrium patens HOM05D006302 ORTHO05D007960 3.6e-88 330.5 811 34.2
Pp3c9_1614 Physcomitrium patens HOM05D006302 ORTHO05D007960 3.6e-88 330.5 811 34.2
Sc10g0008950 Simmondsia chinensis HOM05D006302 ORTHO05D007960 1.1e-84 318.9 406 47.0
CBR_g4862 Chara braunii HOM05D006302 ORTHO05D007960 4.3e-73 280.4 637 31.2
Glyma.09G169600 Glycine max HOM05D006302 ORTHO05D007960 7.6e-54 216.5 262 46.9
Cre13.g589650 Chlamydomonas reinhardtii HOM05D006302 ORTHO05D007960 1.6e-27 129.0 272 31.2
C04p33970 Brassica napus HOM05D026191 ORTHO05D007960 1.2e-11 76.3 56 75.0
C09p22460 Brassica napus HOM05D026191 ORTHO05D007960 1.2e-11 76.3 56 75.0
C08p09490 Brassica napus HOM05D026191 ORTHO05D040356 7.9e-11 73.6 53 75.5
BolC8t48616H Brassica oleracea HOM05D026191 ORTHO05D040356 3.9e-10 71.2 56 73.2
Actinidia04194 Actinidia chinensis HOM05D006302 ORTHO05D007960 1.5e-09 69.3 71 50.7
Cpa.g.sc7.124 Carica papaya HOM05D006302 ORTHO05D007960 3.3e-09 68.2 164 36.0


User provided reference genes

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