Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G17680 Arabidopsis thaliana HOM05D004919 ORTHO05D005994 4.1e-190 667.9 346 100.0
AL3G30800 Arabidopsis lyrata HOM05D004919 ORTHO05D005994 3.5e-157 558.5 316 92.1
Carub.0003s1741 Capsella rubella HOM05D004919 ORTHO05D005994 3.5e-141 505.4 347 79.5
BraA05t22046Z Brassica rapa HOM05D004919 ORTHO05D005994 7.2e-134 481.1 341 78.0
BcaB06g25821 Brassica carinata HOM05D004919 ORTHO05D005994 9.3e-134 480.7 305 84.3
Sp3g15820 Schrenkiella parvula HOM05D004919 ORTHO05D005994 2.7e-133 479.2 304 85.5
Thhalv10021085m.g Eutrema salsugineum HOM05D004919 ORTHO05D005994 1.1e-129 467.2 343 77.0
BcaB06g25823 Brassica carinata HOM05D004919 ORTHO05D005994 3.1e-129 465.7 320 79.7
A05p32170 Brassica napus HOM05D004919 ORTHO05D005994 3.8e-127 458.8 306 82.0
CARHR093030 Cardamine hirsuta HOM05D004919 ORTHO05D005994 3.2e-126 455.7 321 79.1
C05p48710 Brassica napus HOM05D004919 ORTHO05D005994 1.0e-124 450.7 306 80.4
BolC5t33607H Brassica oleracea HOM05D004919 ORTHO05D005994 1.0e-124 450.7 306 80.4
Aa31LG8G4550 Aethionema arabicum HOM05D004919 ORTHO05D005994 1.2e-109 400.6 320 74.1
Sp1g35340 Schrenkiella parvula HOM05D004919 ORTHO05D005994 9.8e-83 311.2 297 60.6
AL1G55030 Arabidopsis lyrata HOM05D004919 ORTHO05D005994 4.9e-82 308.9 300 60.7
BolC8t47321H Brassica oleracea HOM05D004919 ORTHO05D005994 1.7e-79 300.4 297 59.3
CARHR038020 Cardamine hirsuta HOM05D004919 ORTHO05D005994 1.7e-79 300.4 295 61.0
AT1G48405 Arabidopsis thaliana HOM05D004919 ORTHO05D005994 6.6e-79 298.5 297 59.3
A08p04740 Brassica napus HOM05D004919 ORTHO05D005994 6.6e-79 298.5 297 58.9
C08p05110 Brassica napus HOM05D004919 ORTHO05D005994 6.6e-79 298.5 297 58.9
BraA08t32503Z Brassica rapa HOM05D004919 ORTHO05D005994 7.3e-78 295.0 297 58.2
Carub.0001s3752 Capsella rubella HOM05D004919 ORTHO05D005994 7.3e-78 295.0 298 58.1
BcaC07g37137 Brassica carinata HOM05D004919 ORTHO05D005994 4.7e-77 292.4 297 57.9
Thhalv10012064m.g Eutrema salsugineum HOM05D004919 ORTHO05D005994 1.5e-75 287.3 290 60.3
BcaB07g33762 Brassica carinata HOM05D004919 ORTHO05D005994 1.4e-73 280.8 287 58.2
BcaC01g03740 Brassica carinata HOM05D004919 ORTHO05D005994 3.5e-64 249.6 194 72.2
BraA06t23655Z Brassica rapa HOM05D004919 ORTHO05D005994 6.2e-61 238.8 285 51.2
Aa31LG10G5370 Aethionema arabicum HOM05D004919 ORTHO05D005994 3.4e-59 233.0 315 47.3
A06p04510 Brassica napus HOM05D004919 ORTHO05D005994 5.8e-59 232.3 285 50.5
BcaB04g18959 Brassica carinata HOM05D004919 ORTHO05D005994 1.9e-54 217.2 131 86.3
C03p49080 Brassica napus HOM05D004919 ORTHO05D005994 1.4e-52 211.1 151 74.8
BolC3t17188H Brassica oleracea HOM05D004919 ORTHO05D005994 1.4e-52 211.1 151 74.8
AL1G55008 Arabidopsis lyrata HOM05D004919 ORTHO05D005994 4.9e-50 202.6 186 62.4
BcaB04g17432 Brassica carinata HOM05D004919 ORTHO05D005994 3.3e-46 189.9 202 56.9
Atru.chr9.355 Acer truncatum HOM05D004919 ORTHO05D005994 1.2e-40 171.4 326 35.6
BcaB04g17430 Brassica carinata HOM05D004919 ORTHO05D005994 5.1e-39 166.0 187 54.5
TWI60G1404 Tripterygium wilfordii HOM05D004919 ORTHO05D005994 1.3e-37 161.4 277 38.6
Ciclev10020883m.g Citrus clementina HOM05D004919 ORTHO05D005994 2.8e-37 160.2 255 38.4
Glyma.09G166300 Glycine max HOM05D004919 ORTHO05D005994 6.9e-36 155.6 354 34.2
Medtr6g081040 Medicago truncatula HOM05D004919 ORTHO05D005994 6.9e-36 155.6 260 41.5
TWI81G0707 Tripterygium wilfordii HOM05D004919 ORTHO05D005994 6.9e-36 155.6 249 40.6
C06p02850 Brassica napus HOM05D004919 ORTHO05D005994 1.2e-35 154.8 184 52.2
C06p02890 Brassica napus HOM05D004919 ORTHO05D005994 1.2e-35 154.8 184 52.2
Ca_00018_v3 Cicer arietinum L. HOM05D004919 ORTHO05D005994 1.2e-35 154.8 331 36.3
Glyma.16G216300 Glycine max HOM05D004919 ORTHO05D005994 2.6e-35 153.7 349 36.1
TPR.G24055 Trifolium pratense HOM05D004919 ORTHO05D005994 1.3e-34 151.4 336 36.9
MD06G1238400 Malus domestica HOM05D004919 ORTHO05D005994 2.2e-34 150.6 348 32.5
TAR622G0944 Trochodendron aralioides HOM05D004919 ORTHO05D005994 4.9e-34 149.4 256 39.1
C06p02940 Brassica napus HOM05D004919 ORTHO05D005994 8.4e-34 148.7 174 52.9
Haze_18425 Corylus avellana HOM05D004919 ORTHO05D005994 1.1e-33 148.3 319 35.1
Psat1g120680 Pisum sativum HOM05D004919 ORTHO05D005994 1.1e-33 148.3 302 36.1
PSO782G5234 Papaver somniferum HOM05D004919 ORTHO05D005994 1.4e-33 147.9 331 36.3
VMungo0464G0748 Vigna mungo HOM05D004919 ORTHO05D005994 1.9e-33 147.5 367 33.2
Lj2g0012075 Lotus japonicus HOM05D004919 ORTHO05D005994 3.2e-33 146.7 239 38.5
Cfa017790 Carpinus fangiana HOM05D004919 ORTHO05D005994 5.5e-33 146.0 320 33.8
Potri.015G030100 Populus trichocarpa HOM05D004919 ORTHO05D005994 7.1e-33 145.6 302 37.7
EL10Ac8g19437 Beta vulgaris HOM05D004919 ORTHO05D005994 2.7e-32 143.7 261 37.9
Phvul.004G141900 Phaseolus vulgaris HOM05D004919 ORTHO05D005994 2.7e-32 143.7 357 33.6
DCAR_013999 Daucus carota HOM05D004919 ORTHO05D005994 6.0e-32 142.5 272 36.0
Potri.012G038000 Populus trichocarpa HOM05D004919 ORTHO05D005994 1.3e-31 141.4 321 34.9
Nitab4.5_0000782g0200 Nicotiana tabacum HOM05D004919 ORTHO05D005994 1.8e-31 141.0 298 32.6
Aqoxy3G04241 Aquilegia oxysepala HOM05D004919 ORTHO05D005994 2.3e-31 140.6 242 40.1
CAN.G65.77 Capsicum annuum HOM05D004919 ORTHO05D005994 3.0e-31 140.2 252 37.3
PSO063G6227 Papaver somniferum HOM05D004919 ORTHO05D005994 3.0e-31 140.2 333 35.7
PGR083G2189 Punica granatum HOM05D004919 ORTHO05D005994 3.0e-31 140.2 331 33.8
RcHm_v2.0_Chr7g0177301 Rosa chinensis HOM05D004919 ORTHO05D005994 6.7e-31 139.0 358 32.4
Lalb_Chr24g0398491 Lupinus albus HOM05D004919 ORTHO05D005994 1.1e-30 138.3 263 36.1
FAN08G0951 Fragaria x ananassa HOM05D004919 ORTHO05D005994 1.9e-30 137.5 359 31.5
Sabra12G0026400 Salix brachista HOM05D004919 ORTHO05D005994 1.9e-30 137.5 306 35.9
Cc00_g18770 Coffea canephora HOM05D004919 ORTHO05D005994 3.3e-30 136.7 292 35.3
Lalb_Chr22g0353861 Lupinus albus HOM05D004919 ORTHO05D005994 3.3e-30 136.7 250 38.8
Dinv06632 Davidia involucrata HOM05D004919 ORTHO05D005994 4.3e-30 136.3 249 39.4
Sabra15G0025100 Salix brachista HOM05D004919 ORTHO05D005994 4.3e-30 136.3 318 35.2
Nitab4.5_0004612g0040 Nicotiana tabacum HOM05D004919 ORTHO05D005994 5.6e-30 136.0 295 31.9
Hma1.2p1_0983F.1_g244060 Hydrangea macrophylla HOM05D004919 ORTHO05D005994 9.6e-30 135.2 251 39.8
FAN18G2684 Fragaria x ananassa HOM05D004919 ORTHO05D005994 1.3e-29 134.8 362 31.8
Nn4g24904 Nelumbo nucifera HOM05D004919 ORTHO05D005994 1.3e-29 134.8 308 34.1
Hund22396 Selenicereus undatus HOM05D004919 ORTHO05D005994 1.6e-29 134.4 259 35.9
AUR62033077 Chenopodium quinoa HOM05D004919 ORTHO05D005994 2.1e-29 134.0 245 37.1
FvH4_5g18280 Fragaria vesca HOM05D004919 ORTHO05D005994 2.1e-29 134.0 362 31.8
AUR62034040 Chenopodium quinoa HOM05D004919 ORTHO05D005994 2.8e-29 133.7 245 36.3
FAN13G3100 Fragaria x ananassa HOM05D004919 ORTHO05D005994 3.7e-29 133.3 361 31.6
Prupe.5G242300 Prunus persica HOM05D004919 ORTHO05D005994 3.7e-29 133.3 251 35.9
QL03p069496 Quercus lobata HOM05D004919 ORTHO05D005994 3.7e-29 133.3 275 37.5
DCAR_010223 Daucus carota HOM05D004919 ORTHO05D005994 4.8e-29 132.9 274 37.2
SalBow8G2727 Salvia bowleyana HOM05D004919 ORTHO05D005994 4.8e-29 132.9 240 36.7
Peaxi162Scf00171g00315 Petunia axillaris HOM05D004919 ORTHO05D005994 6.2e-29 132.5 292 31.5
CDE05G3589 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 8.2e-29 132.1 249 36.5
CiPaw.16G072100 Carya illinoinensis HOM05D004919 ORTHO05D005994 1.1e-28 131.7 322 35.7
FAN04G2831 Fragaria x ananassa HOM05D004919 ORTHO05D005994 1.1e-28 131.7 366 31.1
MD14G1244700 Malus domestica HOM05D004919 ORTHO05D005994 1.1e-28 131.7 340 31.5
arahy.Tifrunner.gnm1.ann1.SE8RA9 Arachis hypogaea HOM05D004919 ORTHO05D005994 2.4e-28 130.6 253 36.8
MELO3C001949.2 Cucumis melo HOM05D004919 ORTHO05D005994 2.4e-28 130.6 317 32.2
PGR044G0656 Punica granatum HOM05D004919 ORTHO05D005994 2.4e-28 130.6 239 36.8
PGSC0003DMG400027049 Solanum tuberosum HOM05D004919 ORTHO05D005994 2.4e-28 130.6 253 35.6
DCAR_023254 Daucus carota HOM05D004919 ORTHO05D005994 3.1e-28 130.2 278 34.9
CsaV3_1G005110 Cucumis sativus L. HOM05D004919 ORTHO05D005994 5.3e-28 129.4 316 33.2
arahy.Tifrunner.gnm1.ann1.C1QDUR Arachis hypogaea HOM05D004919 ORTHO05D005994 6.9e-28 129.0 251 35.1
PGSC0003DMG400010158 Solanum tuberosum HOM05D004919 ORTHO05D005994 6.9e-28 129.0 250 33.6
CDE05G0351 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 9.0e-28 128.6 249 36.1
Oeu038486.1 Olea europaea HOM05D004919 ORTHO05D005994 9.0e-28 128.6 275 36.0
Solyc03g098450.3 Solanum lycopersicum HOM05D004919 ORTHO05D005994 1.2e-27 128.3 279 33.7
Actinidia34660 Actinidia chinensis HOM05D004919 ORTHO05D005994 1.5e-27 127.9 260 35.4
MBI03_g05108_MAGBIO Magnolia biondii HOM05D004919 ORTHO05D005994 1.5e-27 127.9 274 36.1
Solyc06g072290.3 Solanum lycopersicum HOM05D004919 ORTHO05D005994 1.5e-27 127.9 301 32.6
CAN.G1909.1 Capsicum annuum HOM05D004919 ORTHO05D005994 2.0e-27 127.5 247 34.0
Migut.D02060 Erythranthe guttata HOM05D004919 ORTHO05D005994 2.0e-27 127.5 279 34.1
Manes.02G214000 Manihot esculenta HOM05D004919 ORTHO05D005994 2.0e-27 127.5 285 34.4
Sopen03g029190 Solanum pennellii HOM05D004919 ORTHO05D005994 2.0e-27 127.5 279 33.7
Cpa.g.sc111.44 Carica papaya HOM05D004919 ORTHO05D005994 2.6e-27 127.1 301 33.6
Lj5P166T67 Lonicera japonica HOM05D004919 ORTHO05D005994 4.5e-27 126.3 233 39.1
Sed0023393 Sechium edule HOM05D004919 ORTHO05D005994 4.5e-27 126.3 328 32.3
ClCG04G012590 Citrullus lanatus HOM05D004919 ORTHO05D005994 5.8e-27 125.9 275 34.5
arahy.Tifrunner.gnm1.ann1.UCE8LX Arachis hypogaea HOM05D004919 ORTHO05D005994 7.6e-27 125.6 258 34.9
Sopen06g028660 Solanum pennellii HOM05D004919 ORTHO05D005994 7.6e-27 125.6 298 33.6
Oeu023547.1 Olea europaea HOM05D004919 ORTHO05D005994 2.9e-26 123.6 245 37.1
Lj9C413T11 Lonicera japonica HOM05D004919 ORTHO05D005994 3.8e-26 123.2 229 38.9
Eucgr.K02309 Eucalyptus grandis HOM05D004919 ORTHO05D005994 6.5e-26 122.5 318 30.2
MSTRG.9710 Avicennia marina HOM05D004919 ORTHO05D005994 8.4e-26 122.1 239 33.9
Peaxi162Scf00643g00061 Petunia axillaris HOM05D004919 ORTHO05D005994 1.1e-25 121.7 248 35.9
arahy.Tifrunner.gnm1.ann1.03EXEF Arachis hypogaea HOM05D004919 ORTHO05D005994 1.4e-25 121.3 233 36.1
MSTRG.4322 Avicennia marina HOM05D004919 ORTHO05D005994 1.4e-25 121.3 278 33.5
BolC6t35415H Brassica oleracea HOM05D004919 ORTHO05D005994 1.4e-25 121.3 150 49.3
BcaC08g43034 Brassica carinata HOM05D004919 ORTHO05D005994 5.5e-25 119.4 150 48.7
BolC6t35416H Brassica oleracea HOM05D004919 ORTHO05D005994 5.5e-25 119.4 149 49.0
SGA_v2.0_scaffold335G49119 Striga asiatica HOM05D004919 ORTHO05D003750 1.0e-23 115.2 241 36.9
CANSAT01G3029 Cannabis sativa HOM05D004919 ORTHO05D005994 1.8e-23 114.4 314 33.4
ATR0618G253 Amborella trichopoda HOM05D004919 ORTHO05D005994 2.3e-23 114.0 241 32.4
unitig_37.g12835 Utricularia gibba HOM05D004919 ORTHO05D005994 2.3e-23 114.0 290 32.4
Oeu061193.1 Olea europaea HOM05D004919 ORTHO05D005994 3.9e-23 113.2 277 33.2
Nitab4.5_0002049g0020 Nicotiana tabacum HOM05D004919 ORTHO05D005994 1.6e-21 107.8 204 36.8
Lj9A350G57 Lonicera japonica HOM05D004919 ORTHO05D005994 6.3e-21 105.9 196 37.8
GSVIVG01029368001 Vitis vinifera HOM05D004919 ORTHO05D005994 3.1e-20 103.6 331 29.6
HPP92_008286 Vanilla planifolia HOM05D004919 ORTHO05D005994 2.9e-18 97.1 290 30.3
Zm00001eb404190 Zea mays HOM05D004919 ORTHO05D005994 3.8e-18 96.7 233 31.8
MBI03_g34782_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D000111 1.4e-17 94.7 216 35.6
Os03g0110500 Oryza sativa ssp. japonica HOM05D004919 ORTHO05D005994 2.1e-16 90.9 234 33.3
unitig_0.g27 Utricularia gibba HOM05D004919 ORTHO05D005994 2.1e-16 90.9 190 33.2
ECA233G1753 Erigeron canadensis HOM05D004919 ORTHO05D005994 4.3e-14 83.2 298 31.5
Lj1g0019516 Lotus japonicus HOM05D004919 ORTHO05D005994 5.7e-14 82.8 117 39.3
SGA_v2.0_scaffold164G38115 Striga asiatica HOM05D004919 ORTHO05D005994 6.3e-13 79.3 235 31.5
HanXRQChr12g0367661 Helianthus annuus HOM05D004919 ORTHO05D005994 2.4e-12 77.4 266 31.6
CDE04G0293 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 6.9e-12 75.9 188 31.9
HanXRQChr13g0387291 Helianthus annuus HOM05D004919 ORTHO05D005994 9.1e-12 75.5 242 30.2
BcaB04g17431 Brassica carinata HOM05D004919 ORTHO05D005994 3.4e-11 73.6 85 48.2
Lsat_1_v5_gn_8_31480 Lactuca sativa HOM05D004919 ORTHO05D005994 3.4e-11 73.6 252 30.2
CDE02G0066 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 4.7e-08 63.2 138 34.8


User provided reference genes

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