Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G17460 Arabidopsis thaliana HOM05D003268 ORTHO05D003719 1.6e-98 362.8 199 100.0
AL3G30540 Arabidopsis lyrata HOM05D003268 ORTHO05D003719 8.7e-84 313.9 200 87.0
Carub.0003s1718 Capsella rubella HOM05D003268 ORTHO05D003719 3.2e-62 242.3 205 70.7
CARHR092780 Cardamine hirsuta HOM05D003268 ORTHO05D003719 3.9e-52 208.8 210 61.9
Sp3g15630 Schrenkiella parvula HOM05D003268 ORTHO05D003719 3.3e-51 205.7 211 55.9
Thhalv10022081m.g Eutrema salsugineum HOM05D003268 ORTHO05D003719 4.7e-45 185.3 213 49.3
Aa31LG8G4410 Aethionema arabicum HOM05D002272 ORTHO05D005405 3.6e-37 159.1 203 44.8
BcaC09g48706 Brassica carinata HOM05D003268 ORTHO05D003719 8.0e-37 157.9 186 49.5
BolC1t04640H Brassica oleracea HOM05D003268 ORTHO05D003719 8.0e-37 157.9 186 49.5
BcaC09g48702 Brassica carinata HOM05D003268 ORTHO05D003719 2.0e-35 153.3 205 48.8
C01p46780 Brassica napus HOM05D003268 ORTHO05D003719 2.0e-35 153.3 205 48.8
BolC1t04651H Brassica oleracea HOM05D003268 ORTHO05D003719 2.0e-35 153.3 205 48.8
C05p48980 Brassica napus HOM05D003268 ORTHO05D003719 4.4e-35 152.1 193 46.1
BolC5t33638H Brassica oleracea HOM05D003268 ORTHO05D003719 4.4e-35 152.1 193 46.1
BcaB06g25842 Brassica carinata HOM05D003268 ORTHO05D003719 9.8e-35 151.0 195 43.6
A01p36890 Brassica napus HOM05D003268 ORTHO05D003719 1.1e-33 147.5 187 51.9
BcaC05g28789 Brassica carinata HOM05D003268 ORTHO05D003719 1.4e-33 147.1 194 46.4
BraA01t03748Z Brassica rapa HOM05D003268 ORTHO05D003719 2.4e-33 146.4 187 51.9
BcaB04g20839 Brassica carinata HOM05D003268 ORTHO05D003719 5.4e-33 145.2 187 53.5
THA.LOC104821812 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 1.0e-31 141.0 183 45.4
C01p46720 Brassica napus HOM05D003268 ORTHO05D003719 2.5e-30 136.3 169 47.3
Cpa.g.sc53.77 Carica papaya HOM05D003268 ORTHO05D003719 1.8e-28 130.2 187 41.2
COL.COLO4_34517 Corchorus olitorius HOM05D003268 ORTHO05D003719 4.4e-27 125.6 203 38.4
Lj6P701T18 Lonicera japonica HOM05D003268 ORTHO05D003719 7.5e-27 124.8 181 40.3
Thecc.04G313000 Theobroma cacao HOM05D003268 ORTHO05D003719 1.2e-24 117.5 194 36.1
QL06p014213 Quercus lobata HOM05D003268 ORTHO05D003719 1.6e-24 117.1 208 36.5
Atru.chr4.3150 Acer truncatum HOM05D003268 ORTHO05D003719 2.7e-24 116.3 199 34.7
Gohir.D02G064200 Gossypium hirsutum HOM05D003268 ORTHO05D003719 4.5e-24 115.5 191 35.6
Gorai.005G072500 Gossypium raimondii HOM05D003268 ORTHO05D003719 4.5e-24 115.5 191 35.6
Duzib212G0032 Durio zibethinus HOM05D003268 ORTHO05D003719 7.8e-24 114.8 192 34.9
Gohir.A02G058400 Gossypium hirsutum HOM05D003268 ORTHO05D003719 1.0e-23 114.4 191 35.1
Ciclev10005819m.g Citrus clementina HOM05D003268 ORTHO05D003719 2.5e-22 109.8 199 43.7
MD16G1136300 Malus domestica HOM05D003268 ORTHO05D003719 3.6e-21 105.9 193 32.6
Manes.11G020800 Manihot esculenta HOM05D003268 ORTHO05D003719 1.4e-20 104.0 197 33.5
TWI09G0361 Tripterygium wilfordii HOM05D003268 ORTHO05D003719 8.9e-20 101.3 159 37.1
MD13G1139400 Malus domestica HOM05D003268 ORTHO05D003719 1.2e-19 100.9 193 33.2
Oeu020279.1 Olea europaea HOM05D003268 ORTHO05D003719 1.2e-19 100.9 182 31.3
PGR031G0843 Punica granatum HOM05D003268 ORTHO05D003719 1.2e-19 100.9 197 32.0
CiPaw.01G129300 Carya illinoinensis HOM05D003268 ORTHO05D003719 1.5e-19 100.5 201 33.8
TAR636G0250 Trochodendron aralioides HOM05D003268 ORTHO05D003719 2.0e-19 100.1 178 34.3
Ca_21366_v3 Cicer arietinum L. HOM05D003268 ORTHO05D003719 2.6e-19 99.8 182 30.2
Sabra10G0001700 Salix brachista HOM05D003268 ORTHO05D003719 3.4e-19 99.4 186 35.5
Duzib128G0788 Durio zibethinus HOM05D003268 ORTHO05D003719 5.7e-19 98.6 191 33.5
Prupe.1G105300 Prunus persica HOM05D003268 ORTHO05D003719 5.7e-19 98.6 150 36.0
Oeu034985.1 Olea europaea HOM05D003268 ORTHO05D003719 9.8e-19 97.8 185 29.2
Aqoxy2G02513 Aquilegia oxysepala HOM05D003268 ORTHO05D003719 1.7e-18 97.1 185 30.8
Haze_00767 Corylus avellana HOM05D003268 ORTHO05D003719 1.7e-18 97.1 187 32.6
Lj5g0018140 Lotus japonicus HOM05D003268 ORTHO05D003719 2.2e-18 96.7 180 32.8
Gohir.D13G184200 Gossypium hirsutum HOM05D003268 ORTHO05D003719 3.7e-18 95.9 198 32.8
Gorai.013G209800 Gossypium raimondii HOM05D003268 ORTHO05D003719 3.7e-18 95.9 198 32.8
Solyc03g114270.1 Solanum lycopersicum HOM05D003268 ORTHO05D003719 3.7e-18 95.9 179 34.1
Sopen03g033360 Solanum pennellii HOM05D003268 ORTHO05D003796 3.7e-18 95.9 179 34.1
CANSAT54G2527 Cannabis sativa HOM05D003268 ORTHO05D003719 4.9e-18 95.5 179 37.4
Potri.010G002200 Populus trichocarpa HOM05D003268 ORTHO05D003719 4.9e-18 95.5 186 34.9
TPR.G12613 Trifolium pratense HOM05D003268 ORTHO05D003719 4.9e-18 95.5 203 30.5
TAR633G0292 Trochodendron aralioides HOM05D003268 ORTHO05D003719 4.9e-18 95.5 175 32.6
Medtr4g124100 Medicago truncatula HOM05D003268 ORTHO05D003719 6.4e-18 95.1 203 30.5
ClCG03G017870 Citrullus lanatus HOM05D003268 ORTHO05D003719 8.3e-18 94.7 201 31.8
Thecc.05G329300 Theobroma cacao HOM05D003268 ORTHO05D003719 8.3e-18 94.7 173 34.1
COL.COLO4_05489 Corchorus olitorius HOM05D003268 ORTHO05D003719 1.1e-17 94.4 187 33.2
Dinv29508 Davidia involucrata HOM05D003268 ORTHO05D003719 1.1e-17 94.4 166 34.3
Sc16g0009390 Simmondsia chinensis HOM05D003268 ORTHO05D003719 1.1e-17 94.4 197 29.9
PGSC0003DMG400024495 Solanum tuberosum HOM05D003268 ORTHO05D003719 1.8e-17 93.6 179 32.4
Gohir.A13G177600 Gossypium hirsutum HOM05D003268 ORTHO05D003719 3.2e-17 92.8 198 32.8
Manes.08G107700 Manihot esculenta HOM05D003268 ORTHO05D003719 7.0e-17 91.7 190 31.1
SHI00050 Sapria himalayana HOM05D002272 ORTHO05D005405 7.0e-17 91.7 196 31.1
Sed0007403 Sechium edule HOM05D003268 ORTHO05D003719 1.2e-16 90.9 193 35.2
TAR362G1252 Trochodendron aralioides HOM05D003268 ORTHO05D003719 1.2e-16 90.9 175 29.1
Potri.008G206600 Populus trichocarpa HOM05D003268 ORTHO05D003719 1.6e-16 90.5 150 36.7
Nitab4.5_0001808g0030 Nicotiana tabacum HOM05D003268 ORTHO05D003719 2.0e-16 90.1 196 29.6
Sabra08G0150300 Salix brachista HOM05D003268 ORTHO05D003719 2.0e-16 90.1 150 36.7
PGSC0003DMG401019388 Solanum tuberosum HOM05D003268 ORTHO05D003719 2.0e-16 90.1 177 30.5
CsaV3_1G038030 Cucumis sativus L. HOM05D003268 ORTHO05D003719 2.7e-16 89.7 178 33.1
Dinv30944 Davidia involucrata HOM05D003268 ORTHO05D003719 2.7e-16 89.7 191 29.3
Psat0s1206g0240 Pisum sativum HOM05D003268 ORTHO05D003719 4.6e-16 89.0 199 26.6
Sed0010166 Sechium edule HOM05D003268 ORTHO05D003719 4.6e-16 89.0 192 33.3
Sopen10g005750 Solanum pennellii HOM05D003268 ORTHO05D003719 4.6e-16 89.0 179 30.7
PSO170G4270 Papaver somniferum HOM05D003268 ORTHO05D003719 5.9e-16 88.6 173 31.8
Cfa015729 Carpinus fangiana HOM05D003268 ORTHO05D003719 7.8e-16 88.2 155 33.5
RcHm_v2.0_Chr4g0427521 Rosa chinensis HOM05D003268 ORTHO05D003719 1.0e-15 87.8 188 32.4
Nitab4.5_0000039g0190 Nicotiana tabacum HOM05D003268 ORTHO05D003719 1.3e-15 87.4 196 29.1
SalBow5G1243 Salvia bowleyana HOM05D003268 ORTHO05D003719 1.3e-15 87.4 180 30.0
Solyc10g011990.1 Solanum lycopersicum HOM05D003268 ORTHO05D003719 1.3e-15 87.4 179 30.2
MELO3C006751.2 Cucumis melo HOM05D003268 ORTHO05D003719 1.7e-15 87.0 187 32.1
MELO3C015242.2 Cucumis melo HOM05D003268 ORTHO05D003719 2.3e-15 86.7 183 31.7
VMungo0720G1780 Vigna mungo HOM05D003268 ORTHO05D003719 3.0e-15 86.3 173 31.2
Glyma.10G143800 Glycine max HOM05D003268 ORTHO05D003719 5.0e-15 85.5 174 31.6
Glyma.13G118100 Glycine max HOM05D003268 ORTHO05D003719 5.0e-15 85.5 172 33.7
THA.LOC104816841 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 1.1e-14 84.3 172 33.7
Glyma.17G041900 Glycine max HOM05D003268 ORTHO05D003719 1.5e-14 84.0 169 32.5
Ca_10197_v3 Cicer arietinum L. HOM05D003268 ORTHO05D003719 1.9e-14 83.6 175 33.1
Medtr1g484850 Medicago truncatula HOM05D003268 ORTHO05D003719 1.9e-14 83.6 204 27.9
Phvul.007G204700 Phaseolus vulgaris HOM05D003268 ORTHO05D003719 1.9e-14 83.6 174 30.5
TPR.G2590 Trifolium pratense HOM05D003268 ORTHO05D003719 1.9e-14 83.6 175 32.0
TWI56G0501 Tripterygium wilfordii HOM05D003268 ORTHO05D003719 1.9e-14 83.6 188 31.9
HanXRQChr09g0248281 Helianthus annuus HOM05D003268 ORTHO05D003719 2.5e-14 83.2 181 30.4
unitig_8.g4507 Utricularia gibba HOM05D003268 ORTHO05D003719 3.3e-14 82.8 196 30.1
Glyma.20G092502 Glycine max HOM05D003268 ORTHO05D003719 4.3e-14 82.4 180 30.0
Lalb_Chr13g0299031 Lupinus albus HOM05D003268 ORTHO05D003719 4.3e-14 82.4 171 30.4
MBI19_g47476_MAGBIO Magnolia biondii HOM05D003268 ORTHO05D003719 4.3e-14 82.4 200 29.5
MSTRG.20352 Avicennia marina HOM05D003268 ORTHO05D003719 5.6e-14 82.0 190 26.3
PSO761G0464 Papaver somniferum HOM05D003268 ORTHO05D003719 9.5e-14 81.3 196 25.5
Aa31LG1G5560 Aethionema arabicum HOM05D003268 ORTHO05D003719 1.2e-13 80.9 179 33.0
Lj5P319T26 Lonicera japonica HOM05D003268 ORTHO05D003719 1.2e-13 80.9 179 31.3
CiPaw.07G035600 Carya illinoinensis HOM05D003268 ORTHO05D003719 1.6e-13 80.5 187 31.6
Oeu016542.1 Olea europaea HOM05D003268 ORTHO05D003719 1.6e-13 80.5 191 30.4
Psat6g155480 Pisum sativum HOM05D003268 ORTHO05D003719 1.6e-13 80.5 174 29.9
RcHm_v2.0_Chr3g0458411 Rosa chinensis HOM05D003268 ORTHO05D003719 1.6e-13 80.5 174 31.0
Cpa.g.sc48.222 Carica papaya HOM05D003268 ORTHO05D003719 2.1e-13 80.1 197 28.9
Lj4g0025064 Lotus japonicus HOM05D003268 ORTHO05D003719 2.1e-13 80.1 189 30.7
HanXRQChr09g0250221 Helianthus annuus HOM05D003268 ORTHO05D003719 2.8e-13 79.7 182 32.4
PSO210G7784 Papaver somniferum HOM05D003268 ORTHO05D003719 3.6e-13 79.3 196 25.0
Ciclev10013870m.g Citrus clementina HOM05D003268 ORTHO05D003719 1.4e-12 77.4 174 31.0
Oeu023379.1 Olea europaea HOM05D003268 ORTHO05D003719 1.4e-12 77.4 191 28.3
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 1.4e-12 77.4 168 31.0
Oeu023377.1 Olea europaea HOM05D003268 ORTHO05D003719 1.8e-12 77.0 191 28.3
CsaV3_3G015530 Cucumis sativus L. HOM05D003268 ORTHO05D003719 2.3e-12 76.6 95 36.8
Hma1.2p1_0759F.1_g213940 Hydrangea macrophylla HOM05D003268 ORTHO05D003719 3.1e-12 76.3 178 30.9
SGA_v2.0_scaffold22G09705 Striga asiatica HOM05D003268 ORTHO05D003719 3.1e-12 76.3 186 29.0
VMungo1215G0793 Vigna mungo HOM05D003268 ORTHO05D003719 4.0e-12 75.9 165 33.3
FvH4_6g08440 Fragaria vesca HOM05D003268 ORTHO05D003719 5.2e-12 75.5 174 31.0
FAN02G3445 Fragaria x ananassa HOM05D003268 ORTHO05D003719 5.2e-12 75.5 178 32.0
FAN14G0797 Fragaria x ananassa HOM05D003268 ORTHO05D003719 5.2e-12 75.5 174 31.0
SalBow4G1159 Salvia bowleyana HOM05D003268 ORTHO05D003719 5.2e-12 75.5 197 27.9
PGSC0003DMG400044873 Solanum tuberosum HOM05D003268 ORTHO05D003719 5.2e-12 75.5 178 28.7
Actinidia11688 Actinidia chinensis HOM05D003268 ORTHO05D003719 6.8e-12 75.1 197 32.5
QL03p010269 Quercus lobata HOM05D003268 ORTHO05D003719 8.9e-12 74.7 159 34.0
QL03p010503 Quercus lobata HOM05D003268 ORTHO05D003719 8.9e-12 74.7 159 34.0
Nitab4.5_0005904g0060 Nicotiana tabacum HOM05D003268 ORTHO05D003719 1.5e-11 73.9 178 29.2
Nitab4.5_0002485g0060 Nicotiana tabacum HOM05D003268 ORTHO05D003719 2.6e-11 73.2 177 30.5
Cc02_g35810 Coffea canephora HOM05D003268 ORTHO05D003719 3.4e-11 72.8 200 26.5
Haze_03993 Corylus avellana HOM05D003268 ORTHO05D003719 3.4e-11 72.8 186 30.1
ATR0796G330 Amborella trichopoda HOM05D003268 ORTHO05D003719 7.5e-11 71.6 206 33.0
Sed0001415 Sechium edule HOM05D003268 ORTHO05D003719 7.5e-11 71.6 178 31.5
vmacro01600 Vaccinium macrocarpon HOM05D003268 ORTHO05D003719 7.5e-11 71.6 183 30.1
DCAR_001893 Daucus carota HOM05D003268 ORTHO05D003719 9.8e-11 71.2 179 30.2
ECA240G0886 Erigeron canadensis HOM05D003268 ORTHO05D003719 9.8e-11 71.2 184 27.7
Lalb_Chr07g0181591 Lupinus albus HOM05D003268 ORTHO05D003719 9.8e-11 71.2 165 29.1
Rhsim11G0103200 Rhododendron simsii HOM05D003268 ORTHO05D003719 9.8e-11 71.2 185 30.3
Phvul.003G123200 Phaseolus vulgaris HOM05D003268 ORTHO05D003719 2.2e-10 70.1 168 31.5
A09p65470 Brassica napus HOM05D003268 ORTHO05D003719 2.9e-10 69.7 178 28.7
BraA09t41892Z Brassica rapa HOM05D003268 ORTHO05D003719 2.9e-10 69.7 178 28.7
Lalb_Chr06g0167311 Lupinus albus HOM05D003268 ORTHO05D003719 2.9e-10 69.7 175 28.6
HPP92_012769 Vanilla planifolia HOM05D003268 ORTHO05D003719 2.9e-10 69.7 182 30.2
CAN.G1248.20 Capsicum annuum HOM05D003268 ORTHO05D003719 3.7e-10 69.3 184 26.1
ECA234G2755 Erigeron canadensis HOM05D003268 ORTHO05D003719 6.4e-10 68.6 188 27.7
MSTRG.16427 Avicennia marina HOM05D003268 ORTHO05D003719 1.1e-09 67.8 188 27.7
PGSC0003DMG400044126 Solanum tuberosum HOM05D003268 ORTHO05D003719 1.4e-09 67.4 183 26.8
Solyc01g101160.2 Solanum lycopersicum HOM05D003268 ORTHO05D003719 2.4e-09 66.6 183 26.2
Sopen01g044640 Solanum pennellii HOM05D003268 ORTHO05D003719 2.4e-09 66.6 183 26.2
HanXRQChr10g0294291 Helianthus annuus HOM05D003268 ORTHO05D003719 1.6e-08 63.9 186 26.9
Migut.B00893 Erythranthe guttata HOM05D003268 ORTHO05D003719 4.6e-08 62.4 208 24.0
Ah.10g026900 Amaranthus hybridus HOM05D003268 ORTHO05D003719 6.0e-08 62.0 216 26.4
Migut.N00971 Erythranthe guttata HOM05D003268 ORTHO05D003719 1.7e-07 60.5 187 27.3
unitig_578.g15945 Utricularia gibba HOM05D003268 ORTHO05D003719 1.5e-06 57.4 69 36.2
Aqoxy5G02799 Aquilegia oxysepala HOM05D003268 ORTHO05D003719 3.3e-06 56.2 183 27.3
Migut.O00762 Erythranthe guttata HOM05D003268 ORTHO05D003719 3.3e-06 56.2 177 28.2


User provided reference genes

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