Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G17340 Arabidopsis thaliana HOM05D005298 ORTHO05D008015 0.0e+00 2038.5 1091 100.0
AL3G30390 Arabidopsis lyrata HOM05D005298 ORTHO05D008015 0.0e+00 1898.6 1092 93.5
Thhalv10019950m.g Eutrema salsugineum HOM05D005298 ORTHO05D008015 0.0e+00 1813.1 1089 88.5
Sp3g15510 Schrenkiella parvula HOM05D005298 ORTHO05D008015 0.0e+00 1796.6 1090 87.3
Carub.0003s1705 Capsella rubella HOM05D005298 ORTHO05D008015 0.0e+00 1762.7 1091 86.9
C05p49050 Brassica napus HOM05D005298 ORTHO05D008015 0.0e+00 1705.3 1092 85.7
BolC5t33645H Brassica oleracea HOM05D005298 ORTHO05D008015 0.0e+00 1697.9 1092 85.2
BcaC05g28796 Brassica carinata HOM05D005298 ORTHO05D008015 0.0e+00 1667.1 1065 85.8
BraA05t22069Z Brassica rapa HOM05D005298 ORTHO05D008015 0.0e+00 1654.8 1091 83.6
A05p32420 Brassica napus HOM05D005298 ORTHO05D008015 0.0e+00 1653.3 1086 83.5
Aa31LG8G4260 Aethionema arabicum HOM05D005298 ORTHO05D008015 0.0e+00 1613.2 1120 78.7
Atru.chr4.3122 Acer truncatum HOM05D005298 ORTHO05D008015 0.0e+00 1174.8 1089 57.9
Cfa015712 Carpinus fangiana HOM05D005298 ORTHO05D008015 0.0e+00 1171.0 1085 55.9
Thecc.04G309800 Theobroma cacao HOM05D005298 ORTHO05D008015 0.0e+00 1170.6 1098 59.6
QL06p013696 Quercus lobata HOM05D005298 ORTHO05D008015 0.0e+00 1169.8 1140 57.3
Dinv29532 Davidia involucrata HOM05D005298 ORTHO05D008015 0.0e+00 1162.9 1087 59.2
COL.COLO4_34539 Corchorus olitorius HOM05D005298 ORTHO05D008015 0.0e+00 1157.5 1089 58.6
CSS0017624 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 0.0e+00 1146.3 1084 57.0
Sabra10G0117500 Salix brachista HOM05D005298 ORTHO05D008015 0.0e+00 1144.4 1092 57.8
Ciclev10004217m.g Citrus clementina HOM05D005298 ORTHO05D008015 0.0e+00 1144.0 1092 58.7
Prupe.1G109100 Prunus persica HOM05D005298 ORTHO05D008015 0.0e+00 1142.5 1096 57.4
Haze_00801 Corylus avellana HOM05D005298 ORTHO05D008015 0.0e+00 1141.3 1087 55.4
Gohir.D02G063000 Gossypium hirsutum HOM05D005298 ORTHO05D008015 0.0e+00 1140.2 1100 57.9
Gorai.005G070900 Gossypium raimondii HOM05D005298 ORTHO05D008015 0.0e+00 1137.9 1098 57.9
Manes.15G003700 Manihot esculenta HOM05D005298 ORTHO05D008015 0.0e+00 1136.7 1083 57.5
Gohir.A02G057201 Gossypium hirsutum HOM05D005298 ORTHO05D008015 0.0e+00 1126.7 1098 57.6
MD16G1139700 Malus domestica HOM05D005298 ORTHO05D008015 0.0e+00 1124.8 1099 56.1
CARHR092660 Cardamine hirsuta HOM05D005298 ORTHO05D008015 0.0e+00 1120.1 652 89.1
Potri.010G152700 Populus trichocarpa HOM05D005298 ORTHO05D008015 0.0e+00 1119.8 1093 56.9
RcHm_v2.0_Chr4g0426661 Rosa chinensis HOM05D005298 ORTHO05D008015 0.0e+00 1117.1 1104 56.6
Lalb_Chr07g0181831 Lupinus albus HOM05D005298 ORTHO05D008015 0.0e+00 1115.5 1097 56.1
Lj4g0022536 Lotus japonicus HOM05D005298 ORTHO05D008015 0.0e+00 1112.8 1097 56.2
FAN17G0175 Fragaria x ananassa HOM05D005298 ORTHO05D008015 0.0e+00 1111.3 1092 56.5
FvH4_4g21110 Fragaria vesca HOM05D005298 ORTHO05D008015 0.0e+00 1104.4 1092 56.3
Glyma.17G038500 Glycine max HOM05D005298 ORTHO05D008015 0.0e+00 1100.9 1104 54.1
Rhsim04G0246500 Rhododendron simsii HOM05D005298 ORTHO05D008015 0.0e+00 1097.4 1098 55.3
Phvul.003G119400 Phaseolus vulgaris HOM05D005298 ORTHO05D008015 0.0e+00 1096.6 1102 53.8
Glyma.07G233500 Glycine max HOM05D005298 ORTHO05D008015 0.0e+00 1089.7 1101 54.5
TAR362G0426 Trochodendron aralioides HOM05D005298 ORTHO05D008015 0.0e+00 1087.8 1058 58.6
arahy.Tifrunner.gnm1.ann1.68EF5E Arachis hypogaea HOM05D005298 ORTHO05D008015 0.0e+00 1086.2 1097 55.7
CiPaw.01G131300 Carya illinoinensis HOM05D005298 ORTHO05D008015 0.0e+00 1085.5 973 57.0
FAN07G1807 Fragaria x ananassa HOM05D005298 ORTHO05D008015 0.0e+00 1082.8 1108 55.1
TPR.G12648 Trifolium pratense HOM05D005298 ORTHO05D008015 0.0e+00 1081.6 1089 54.9
Psat0ss1196g0600 Pisum sativum HOM05D005298 ORTHO05D008015 0.0e+00 1080.1 1096 54.5
Aqoxy2G02567 Aquilegia oxysepala HOM05D005298 ORTHO05D008015 0.0e+00 1079.7 1090 55.7
VMungo1215G2609 Vigna mungo HOM05D005298 ORTHO05D008015 0.0e+00 1077.0 1105 53.2
Hma1.2p1_0013F.1_g008000 Hydrangea macrophylla HOM05D005298 ORTHO05D008015 7.5e-312 1074.7 1085 53.8
PGR004G2663 Punica granatum HOM05D005298 ORTHO05D008015 9.0e-308 1060.4 1080 54.9
Eucgr.H04107 Eucalyptus grandis HOM05D005298 ORTHO05D008015 1.2e-307 1060.1 1091 54.3
arahy.Tifrunner.gnm1.ann1.WSVI3W Arachis hypogaea HOM05D005298 ORTHO05D008015 4.5e-307 1058.1 1097 54.1
MBI18_g28901_MAGBIO Magnolia biondii HOM05D005298 ORTHO05D008015 7.1e-305 1050.8 1095 54.6
CANSAT78G1118 Cannabis sativa HOM05D005298 ORTHO05D008015 1.2e-304 1050.0 1108 55.7
Ca_21388_v3 Cicer arietinum L. HOM05D005298 ORTHO05D008015 2.7e-304 1048.9 1057 55.3
CsaV3_6G000130 Cucumis sativus L. HOM05D005298 ORTHO05D008015 1.3e-303 1046.6 1098 52.6
EL10Ac3g06277 Beta vulgaris HOM05D005298 ORTHO05D008015 1.8e-303 1046.2 1088 52.8
Lj3A839G57 Lonicera japonica HOM05D005298 ORTHO05D008015 2.1e-301 1039.3 1069 51.8
Sed0008409 Sechium edule HOM05D005298 ORTHO05D008015 1.4e-300 1036.6 1101 52.6
Oeu020287.1 Olea europaea HOM05D005298 ORTHO05D008015 4.5e-299 1031.6 1084 53.0
PSO210G1072 Papaver somniferum HOM05D005298 ORTHO05D008015 2.3e-295 1019.2 1093 52.9
Sopen01g022220 Solanum pennellii HOM05D005298 ORTHO05D008015 6.9e-292 1007.7 1094 52.8
Solyc01g057520.4 Solanum lycopersicum HOM05D005298 ORTHO05D008015 2.0e-291 1006.1 1094 52.7
Actinidia18497 Actinidia chinensis HOM05D005298 ORTHO05D008015 1.4e-287 993.4 1087 52.7
DCAR_002539 Daucus carota HOM05D005298 ORTHO05D008015 5.1e-287 991.5 1073 53.6
Peaxi162Scf00126g10123 Petunia axillaris HOM05D005298 ORTHO05D008015 2.6e-286 989.2 1083 52.0
Nitab4.5_0000169g0140 Nicotiana tabacum HOM05D005298 ORTHO05D008015 9.7e-286 987.3 1084 52.9
ClCG06G004280 Citrullus lanatus HOM05D005298 ORTHO05D008015 1.0e-282 977.2 1198 47.2
TWI09G0537 Tripterygium wilfordii HOM05D005298 ORTHO05D008015 6.1e-280 968.0 1110 52.9
ECA233G2380 Erigeron canadensis HOM05D005298 ORTHO05D008015 1.0e-279 967.2 1101 51.0
Ah.07g203800 Amaranthus hybridus HOM05D005298 ORTHO05D008015 5.7e-278 961.4 1087 50.4
Nitab4.5_0000992g0090 Nicotiana tabacum HOM05D005298 ORTHO05D008015 1.7e-277 959.9 1104 50.9
Cpa.g.sc146.46 Carica papaya HOM05D005298 ORTHO05D008015 8.2e-277 957.6 1090 52.8
Duzib151G1192 Durio zibethinus HOM05D005298 ORTHO05D008015 1.8e-276 956.4 1094 52.1
CAN.G14.34 Capsicum annuum HOM05D005298 ORTHO05D008015 3.2e-273 945.7 1013 50.3
ATR0796G315 Amborella trichopoda HOM05D005298 ORTHO05D008015 1.3e-269 933.7 1080 48.2
Lsat_1_v5_gn_6_69380 Lactuca sativa HOM05D005298 ORTHO05D008015 1.8e-263 913.3 973 50.3
Zm00001eb164790 Zea mays HOM05D005298 ORTHO05D008015 1.3e-261 907.1 1088 49.0
vmacro07993 Vaccinium macrocarpon HOM05D005298 ORTHO05D008015 2.2e-261 906.4 1162 48.1
AUR62029998 Chenopodium quinoa HOM05D005298 ORTHO05D008015 1.8e-260 903.3 1081 45.9
Nn3g21868 Nelumbo nucifera HOM05D005298 ORTHO05D008015 2.3e-258 896.3 1092 48.4
Os11g0695900 Oryza sativa ssp. japonica HOM05D005298 ORTHO05D008015 1.0e-255 887.5 1095 46.8
MELO3C021240.2 Cucumis melo HOM05D005298 ORTHO05D008015 3.4e-254 882.5 1113 47.9
HanXRQChr09g0251541 Helianthus annuus HOM05D005298 ORTHO05D008015 5.6e-241 838.6 1094 48.4
GSVIVG01017664001 Vitis vinifera HOM05D005298 ORTHO05D008015 7.3e-225 785.0 1104 45.9
Mapoly0002s0222 Marchantia polymorpha HOM05D005298 ORTHO05D008015 4.9e-205 719.2 1126 40.6
GSVIVG01034907001 Vitis vinifera HOM05D005298 ORTHO05D008015 7.4e-201 705.3 612 60.1
CSS0004853 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 6.4e-197 692.2 716 52.7
CARHR092650 Cardamine hirsuta HOM05D005298 ORTHO05D008015 7.9e-195 685.3 443 86.2
Pp3c27_6680 Physcomitrium patens HOM05D005298 ORTHO05D008015 5.5e-188 662.5 1132 39.0
Pp3c21_7100 Physcomitrium patens HOM05D005298 ORTHO05D008015 2.3e-186 657.1 1102 38.2
Pp3c21_7106 Physcomitrium patens HOM05D005298 ORTHO05D008015 2.3e-186 657.1 1102 38.2
SMO200G0212 Selaginella moellendorffii HOM05D005298 ORTHO05D008015 1.5e-177 627.9 930 38.4
Pp3c1_32943 Physcomitrium patens HOM05D005298 ORTHO05D008015 2.9e-157 560.5 1060 33.0
Medtr4g123670 Medicago truncatula HOM05D005298 ORTHO05D008015 4.0e-154 550.1 622 51.6
MD15G1386700 Malus domestica HOM05D005298 ORTHO05D008015 1.4e-146 525.0 503 51.3
Medtr4g123690 Medicago truncatula HOM05D005298 ORTHO05D008015 9.8e-137 492.3 431 58.7
GSVIVG01017599001 Vitis vinifera HOM05D005298 ORTHO05D008015 2.6e-113 414.5 430 49.3
Mapoly0011s0083 Marchantia polymorpha HOM05D005298 ORTHO05D008015 1.4e-98 365.5 828 30.0
SEGI_25654 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 4.6e-94 350.5 465 39.6
PGSC0003DMG400012034 Solanum tuberosum HOM05D005298 ORTHO05D008015 2.1e-78 298.5 443 45.8
FvH4_4g20840 Fragaria vesca HOM05D005298 ORTHO05D008015 1.7e-72 278.9 337 47.2
AUR62002576 Chenopodium quinoa HOM05D005298 ORTHO05D008015 2.7e-70 271.6 368 44.0
Zm00001eb304680 Zea mays HOM05D005298 ORTHO05D008015 5.1e-69 267.3 287 51.2
Cc03_g00330 Coffea canephora HOM05D005298 ORTHO05D008015 2.2e-67 261.9 408 44.1
MCO02G049 Micromonas commoda HOM05D005298 ORTHO05D008015 5.7e-60 237.3 1004 24.5
CSS0040584 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 1.3e-59 236.1 220 49.1
BcaB06g25819 Brassica carinata HOM05D005298 ORTHO05D008015 2.2e-59 235.3 214 80.4
PRCOL_00002040 Prasinoderma coloniale HOM05D005298 ORTHO05D008015 1.5e-57 229.2 708 26.4
Pp3c1_32940 Physcomitrium patens HOM05D005298 ORTHO05D008015 2.0e-57 228.8 402 33.3
AL3G29490 Arabidopsis lyrata HOM05D005298 ORTHO05D008015 5.0e-56 224.2 159 74.2
Zm00001eb026980 Zea mays HOM05D005298 ORTHO05D008015 9.7e-44 183.3 158 56.3
CDE09G0452 Ceratophyllum demersum HOM05D005298 ORTHO05D008015 3.1e-42 178.3 307 37.1
TPR.G8357 Trifolium pratense HOM05D005298 ORTHO05D008015 4.5e-33 147.9 199 43.7
GSVIVG01017598001 Vitis vinifera HOM05D005298 ORTHO05D008015 1.7e-32 146.0 87 77.0
Hma1.2p1_0079F.1_g041380 Hydrangea macrophylla HOM05D005298 ORTHO05D008015 2.3e-29 135.6 90 68.9
SEGI_08042 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 9.8e-28 130.2 138 50.0
TPR.G15154 Trifolium pratense HOM05D005298 ORTHO05D008015 2.0e-25 122.5 179 44.7
SEGI_33872 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 4.7e-22 111.3 120 46.7
TPR.G35281 Trifolium pratense HOM05D005298 ORTHO05D008015 2.3e-21 109.0 133 48.1
TPR.G40673 Trifolium pratense HOM05D005298 ORTHO05D037798 6.8e-21 107.5 111 52.3
SEGI_24323 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 2.6e-20 105.5 94 54.3
GSVIVG01017600001 Vitis vinifera HOM05D005298 ORTHO05D008015 5.7e-20 104.4 104 55.8
ATR0757G088 Amborella trichopoda HOM05D005298 ORTHO05D023441 2.2e-19 102.4 119 42.0
Zm00001eb026970 Zea mays HOM05D005298 ORTHO05D008015 1.2e-17 96.7 115 40.0
Aa31LG5G5320 Aethionema arabicum HOM05D002786 ORTHO05D003493 1.3e-16 93.2 671 21.6
MBI05_g29537_MAGBIO Magnolia biondii HOM05D005298 ORTHO05D008015 6.6e-16 90.9 142 41.5
Zm00001eb183920 Zea mays HOM05D005298 ORTHO05D030733 8.6e-16 90.5 124 36.3
CSS0028497 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D026321 1.5e-15 89.7 155 56.8
MCO08G239 Micromonas commoda HOM05D002786 ORTHO05D003493 1.9e-15 89.4 711 21.4
FAN17G1115 Fragaria x ananassa HOM05D002786 ORTHO05D003493 7.3e-15 87.4 677 20.8
ATR0457G001 Amborella trichopoda HOM05D005298 ORTHO05D023441 1.2e-14 86.7 105 39.0
ECA246G5341 Erigeron canadensis HOM05D002786 ORTHO05D003493 1.2e-12 80.1 687 19.9
Zm00001eb385420 Zea mays HOM05D005298 ORTHO05D030733 1.2e-12 80.1 124 33.9
CDE07G0250 Ceratophyllum demersum HOM05D002786 ORTHO05D003493 2.0e-12 79.3 467 21.0
ATR0605G314 Amborella trichopoda HOM05D005298 ORTHO05D023441 5.8e-12 77.8 89 44.9
ECA234G1297 Erigeron canadensis HOM05D002786 ORTHO05D003493 7.5e-12 77.4 666 20.0
HanXRQChr15g0471871 Helianthus annuus HOM05D002786 ORTHO05D003493 2.9e-11 75.5 674 19.4
Zm00001eb082350 Zea mays HOM05D005298 ORTHO05D008015 2.9e-11 75.5 87 41.4
Zm00001eb187550 Zea mays HOM05D005298 ORTHO05D008015 2.9e-11 75.5 87 41.4
Pp3c9_22260 Physcomitrium patens HOM05D002786 ORTHO05D003493 8.3e-11 73.9 360 21.7
HanXRQChr03g0062991 Helianthus annuus HOM05D002786 ORTHO05D003493 9.2e-10 70.5 666 20.1
Pp3c15_21650 Physcomitrium patens HOM05D002786 ORTHO05D003493 1.2e-09 70.1 650 20.6
TPR.G21809 Trifolium pratense HOM05D005298 ORTHO05D037798 1.2e-09 70.1 63 54.0
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 1.6e-09 69.7 48 60.4
Mapoly0014s0213 Marchantia polymorpha HOM05D002786 ORTHO05D003493 2.7e-09 68.9 660 20.5
Os11g0693900 Oryza sativa ssp. japonica HOM05D005298 ORTHO05D026321 1.5e-07 63.2 187 43.3
ATR0049G027 Amborella trichopoda HOM05D005298 ORTHO05D023441 4.3e-07 61.6 65 43.1
ECA236G0047 Erigeron canadensis HOM05D003602 ORTHO05D004808 9.5e-07 60.5 373 22.8


User provided reference genes

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