Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G17150 Arabidopsis thaliana HOM05D009524 ORTHO05D001207 1.1e-99 366.7 185 100.0
AL3G30130 Arabidopsis lyrata HOM05D009524 ORTHO05D001207 8.4e-57 224.2 160 76.9
CARHR092400 Cardamine hirsuta HOM05D009524 ORTHO05D001207 2.5e-53 212.6 175 64.6
Thhalv10022317m.g Eutrema salsugineum HOM05D009524 ORTHO05D001207 1.3e-49 200.3 179 59.8
AL3G30140 Arabidopsis lyrata HOM05D009524 ORTHO05D001207 5.7e-45 184.9 176 56.2
Thhalv10022234m.g Eutrema salsugineum HOM05D009524 ORTHO05D001207 1.6e-44 183.3 178 59.6
AT3G17152 Arabidopsis thaliana HOM05D009524 ORTHO05D001207 6.9e-43 177.9 170 56.5
Carub.0003s1690 Capsella rubella HOM05D009524 ORTHO05D001207 5.5e-40 168.3 174 51.7
CARHR092420 Cardamine hirsuta HOM05D009524 ORTHO05D001207 1.6e-39 166.8 175 51.4
BcaB04g20861 Brassica carinata HOM05D009524 ORTHO05D001207 9.7e-37 157.5 178 54.5
BcaB04g20860 Brassica carinata HOM05D009524 ORTHO05D001207 2.8e-36 156.0 177 52.5
CARHR092410 Cardamine hirsuta HOM05D009524 ORTHO05D001207 3.7e-36 155.6 175 49.1
A01p37140 Brassica napus HOM05D009524 ORTHO05D001207 2.4e-35 152.9 174 54.0
BraA01t03775Z Brassica rapa HOM05D009524 ORTHO05D001207 3.1e-35 152.5 178 52.8
BcaC09g48672 Brassica carinata HOM05D009524 ORTHO05D001207 1.5e-34 150.2 178 51.7
C01p47080 Brassica napus HOM05D009524 ORTHO05D001207 1.5e-34 150.2 178 51.7
BolC1t04674H Brassica oleracea HOM05D009524 ORTHO05D001207 5.9e-34 148.3 178 51.1
BcaB04g20858 Brassica carinata HOM05D009524 ORTHO05D001207 2.2e-33 146.4 178 50.6
A03p07210 Brassica napus HOM05D009524 ORTHO05D001207 1.2e-31 140.6 178 47.8
BraA03t10043Z Brassica rapa HOM05D009524 ORTHO05D001207 2.1e-31 139.8 178 47.8
BolC3t13318H Brassica oleracea HOM05D009524 ORTHO05D001207 7.9e-31 137.9 178 47.2
C03p08210 Brassica napus HOM05D009524 ORTHO05D001207 2.3e-30 136.3 178 47.2
Sp3g15360 Schrenkiella parvula HOM05D009524 ORTHO05D014763 7.4e-29 131.3 115 60.0
Carub.0003s1689 Capsella rubella HOM05D009524 ORTHO05D001207 3.1e-27 125.9 180 43.3
THA.LOC104802609 Tarenaya hassleriana HOM05D009524 ORTHO05D001207 3.5e-26 122.5 178 40.4
Aa31LG8G4150 Aethionema arabicum HOM05D009524 ORTHO05D001207 6.5e-25 118.2 113 52.2
Gohir.D01G023568 Gossypium hirsutum HOM05D001578 ORTHO05D001207 2.0e-21 106.7 171 33.9
Gorai.002G031200 Gossypium raimondii HOM05D001578 ORTHO05D001207 1.3e-20 104.0 170 35.3
Ciclev10006511m.g Citrus clementina HOM05D001578 ORTHO05D001207 7.0e-19 98.2 175 32.0
Duzib052G0880 Durio zibethinus HOM05D001578 ORTHO05D001207 2.0e-18 96.7 142 36.6
PGR031G2424 Punica granatum HOM05D001578 ORTHO05D001207 2.7e-18 96.3 140 38.6
Gohir.A01G035300 Gossypium hirsutum HOM05D001578 ORTHO05D001207 4.5e-18 95.5 171 32.2
Cpa.g.sc9.24 Carica papaya HOM05D001578 ORTHO05D001207 5.5e-16 88.6 148 33.1
CANSAT78G0727 Cannabis sativa HOM05D001578 ORTHO05D001207 1.2e-13 80.9 144 32.6
Prupe.1G114500 Prunus persica HOM05D001578 ORTHO05D001207 1.2e-13 80.9 174 31.6
MD16G1150100 Malus domestica HOM05D001578 ORTHO05D001207 1.5e-13 80.5 176 27.8
Hma1.2p1_0078F.1_g039850 Hydrangea macrophylla HOM05D001578 ORTHO05D001207 2.6e-13 79.7 177 31.1
Hma1.2p1_1400F.1_g280915 Hydrangea macrophylla HOM05D001578 ORTHO05D001207 2.6e-13 79.7 177 31.1
HanXRQChr13g0395201 Helianthus annuus HOM05D001578 ORTHO05D001207 3.4e-13 79.3 146 33.6
MD13G1150200 Malus domestica HOM05D001578 ORTHO05D001207 3.4e-13 79.3 173 27.7
RcHm_v2.0_Chr4g0425861 Rosa chinensis HOM05D001578 ORTHO05D001207 9.8e-13 77.8 182 27.5
FvH4_1g05890 Fragaria vesca HOM05D001578 ORTHO05D001207 3.7e-12 75.9 148 33.1
RcHm_v2.0_Chr4g0426481 Rosa chinensis HOM05D001578 ORTHO05D001207 4.8e-12 75.5 180 29.4
VMungo1215G0431 Vigna mungo HOM05D001578 ORTHO05D001207 4.8e-12 75.5 172 28.5
Prupe.5G112600 Prunus persica HOM05D001578 ORTHO05D001207 6.3e-12 75.1 176 30.7
Prupe.3G146800 Prunus persica HOM05D001578 ORTHO05D001207 1.4e-11 73.9 137 34.3
TPR.G25407 Trifolium pratense HOM05D001578 ORTHO05D001207 1.4e-11 73.9 142 30.3
COL.COLO4_34577 Corchorus olitorius HOM05D001578 ORTHO05D001207 2.4e-11 73.2 171 27.5
VMungo1215G1199 Vigna mungo HOM05D001578 ORTHO05D001207 2.4e-11 73.2 142 29.6
HanXRQChr13g0395161 Helianthus annuus HOM05D001578 ORTHO05D001207 3.1e-11 72.8 170 28.8
Lalb_Chr12g0200771 Lupinus albus HOM05D001578 ORTHO05D001207 3.1e-11 72.8 168 31.0
MD13G1149800 Malus domestica HOM05D001578 ORTHO05D001207 3.1e-11 72.8 184 27.2
Prupe.1G113800 Prunus persica HOM05D001578 ORTHO05D001207 3.1e-11 72.8 147 32.7
CSS0012414 Camellia sinensis var. sinensis HOM05D001578 ORTHO05D001207 4.1e-11 72.4 174 33.9
Psat4g021360 Pisum sativum HOM05D001578 ORTHO05D001207 4.1e-11 72.4 170 30.6
Duzib052G1048 Durio zibethinus HOM05D001578 ORTHO05D001207 5.4e-11 72.0 144 29.2
Gohir.A05G275500 Gossypium hirsutum HOM05D001578 ORTHO05D001207 7.0e-11 71.6 175 26.9
MD13G1150400 Malus domestica HOM05D001578 ORTHO05D001207 7.0e-11 71.6 142 29.6
CSS0020686 Camellia sinensis var. sinensis HOM05D001578 ORTHO05D001207 9.1e-11 71.2 176 34.1
Thecc.04G305000 Theobroma cacao HOM05D001578 ORTHO05D001207 9.1e-11 71.2 144 28.5
Glyma.20G029700 Glycine max HOM05D001578 ORTHO05D001207 1.2e-10 70.9 185 28.1
Ca_21409_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 1.6e-10 70.5 142 30.3
Ca_21424_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 1.6e-10 70.5 142 30.3
COL.COLO4_34578 Corchorus olitorius HOM05D001578 ORTHO05D001207 1.6e-10 70.5 166 27.7
Haze_01339 Corylus avellana HOM05D001578 ORTHO05D001207 1.6e-10 70.5 174 28.7
Hma1.2p1_0078F.1_g039860 Hydrangea macrophylla HOM05D007634 ORTHO05D004310 2.0e-10 70.1 176 28.4
Phvul.003G117200 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 2.0e-10 70.1 172 26.7
Haze_01334 Corylus avellana HOM05D001578 ORTHO05D001207 2.7e-10 69.7 174 28.7
Ca_21425_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 3.5e-10 69.3 172 26.7
MD16G1150200 Malus domestica HOM05D001578 ORTHO05D001207 3.5e-10 69.3 145 31.0
Phvul.003G117300 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 3.5e-10 69.3 142 29.6
TWI09G1118 Tripterygium wilfordii HOM05D001578 ORTHO05D001207 4.5e-10 68.9 155 28.4
TWI75G0074 Tripterygium wilfordii HOM05D001578 ORTHO05D001207 4.5e-10 68.9 175 25.7
Gohir.D05G277600 Gossypium hirsutum HOM05D001578 ORTHO05D001207 5.9e-10 68.6 175 26.3
Manes.03G207100 Manihot esculenta HOM05D001578 ORTHO05D001207 5.9e-10 68.6 179 29.1
Phvul.003G117400 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 5.9e-10 68.6 172 26.2
Medtr4g122750 Medicago truncatula HOM05D001578 ORTHO05D001207 7.7e-10 68.2 142 30.3
CAN.G305.59 Capsicum annuum HOM05D001578 ORTHO05D001207 1.0e-09 67.8 143 31.5
Haze_04447 Corylus avellana HOM05D001578 ORTHO05D001207 1.0e-09 67.8 178 27.0
Gorai.009G290600 Gossypium raimondii HOM05D001578 ORTHO05D001207 1.0e-09 67.8 144 26.4
Lsat_1_v5_gn_7_59300 Lactuca sativa HOM05D001578 ORTHO05D001207 1.0e-09 67.8 176 30.7
Glyma.07G237300 Glycine max HOM05D001578 ORTHO05D001207 1.3e-09 67.4 180 26.1
HanXRQChr13g0393461 Helianthus annuus HOM05D001578 ORTHO05D001207 1.7e-09 67.0 181 28.2
Lalb_Chr07g0181931 Lupinus albus HOM05D001578 ORTHO05D001207 1.7e-09 67.0 171 26.3
Glyma.20G028900 Glycine max HOM05D001578 ORTHO05D001207 2.3e-09 66.6 176 29.0
Manes.15G002100 Manihot esculenta HOM05D001578 ORTHO05D001207 2.3e-09 66.6 177 30.5
QL06p012837 Quercus lobata HOM05D001578 ORTHO05D001207 2.3e-09 66.6 173 24.9
Thecc.04G304700 Theobroma cacao HOM05D001578 ORTHO05D001207 2.3e-09 66.6 172 25.6
HanXRQChr13g0395221 Helianthus annuus HOM05D001578 ORTHO05D001207 2.9e-09 66.2 183 28.4
Lsat_1_v5_gn_7_59360 Lactuca sativa HOM05D001578 ORTHO05D001207 2.9e-09 66.2 145 31.7
Lsat_1_v5_gn_7_59420 Lactuca sativa HOM05D001578 ORTHO05D001207 2.9e-09 66.2 145 31.7
MD03G1249600 Malus domestica HOM05D001578 ORTHO05D001207 2.9e-09 66.2 145 32.4
MD03G1249700 Malus domestica HOM05D001578 ORTHO05D001207 2.9e-09 66.2 142 28.9
QL06p012845 Quercus lobata HOM05D001578 ORTHO05D001207 2.9e-09 66.2 173 24.9
RcHm_v2.0_Chr7g0200071 Rosa chinensis HOM05D001578 ORTHO05D001207 2.9e-09 66.2 176 27.8
MSTRG.24829 Avicennia marina HOM05D001578 ORTHO05D001207 3.8e-09 65.9 152 31.6
Duzib052G0195 Durio zibethinus HOM05D001578 ORTHO05D001207 3.8e-09 65.9 144 28.5
Rhsim07G0095800 Rhododendron simsii HOM05D003146 ORTHO05D001819 3.8e-09 65.9 170 28.2
RcHm_v2.0_Chr2g0143761 Rosa chinensis HOM05D001578 ORTHO05D001207 3.8e-09 65.9 175 28.0
RcHm_v2.0_Chr2g0144321 Rosa chinensis HOM05D001578 ORTHO05D001207 3.8e-09 65.9 175 28.0
Thecc.08G179500 Theobroma cacao HOM05D001705 ORTHO05D008928 3.8e-09 65.9 147 26.5
Duzib151G0695 Durio zibethinus HOM05D001578 ORTHO05D001207 5.0e-09 65.5 144 26.4
MD03G1248700 Malus domestica HOM05D001578 ORTHO05D001207 5.0e-09 65.5 142 30.3
Psat0s2823g0080 Pisum sativum HOM05D001578 ORTHO05D001207 5.0e-09 65.5 172 26.2
FAN02G2223 Fragaria x ananassa HOM05D001578 ORTHO05D001207 6.5e-09 65.1 167 29.3
Glyma.17G036300 Glycine max HOM05D001578 ORTHO05D001207 6.5e-09 65.1 178 27.0
FvH4_4g20180 Fragaria vesca HOM05D001578 ORTHO05D001207 8.6e-09 64.7 183 26.8
FAN12G2195 Fragaria x ananassa HOM05D001578 ORTHO05D001207 8.6e-09 64.7 183 26.8
HanXRQChr13g0395151 Helianthus annuus HOM05D001578 ORTHO05D001207 1.1e-08 64.3 179 26.8
Lsat_1_v5_gn_5_185380 Lactuca sativa HOM05D001578 ORTHO05D001207 1.1e-08 64.3 145 31.7
FvH4_4g20480 Fragaria vesca HOM05D001578 ORTHO05D001207 1.5e-08 63.9 188 30.3
TPR.G25397 Trifolium pratense HOM05D001578 ORTHO05D001207 1.5e-08 63.9 142 28.2
CSS0037733 Camellia sinensis var. sinensis HOM05D001578 ORTHO05D001207 1.9e-08 63.5 146 29.5
Dinv44262 Davidia involucrata HOM05D001578 ORTHO05D001207 1.9e-08 63.5 160 30.0
ECA233G5780 Erigeron canadensis HOM05D001578 ORTHO05D001207 1.9e-08 63.5 146 28.8
Migut.M01936 Erythranthe guttata HOM05D001578 ORTHO05D001207 1.9e-08 63.5 144 30.6
Lsat_1_v5_gn_6_301 Lactuca sativa HOM05D001578 ORTHO05D001207 1.9e-08 63.5 178 28.1
CAN.G1359.1 Capsicum annuum HOM05D001578 ORTHO05D001207 2.5e-08 63.2 143 28.7
Duzib151G0004 Durio zibethinus HOM05D001578 ORTHO05D001207 2.5e-08 63.2 173 27.7
Glyma.17G036400 Glycine max HOM05D001578 ORTHO05D001207 2.5e-08 63.2 180 25.6
Cfa015283 Carpinus fangiana HOM05D001578 ORTHO05D001207 3.2e-08 62.8 145 29.7
Ca_21410_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 3.2e-08 62.8 182 28.0
MD03G1250000 Malus domestica HOM05D001578 ORTHO05D001207 3.2e-08 62.8 143 30.8
FAN12G0910 Fragaria x ananassa HOM05D001578 ORTHO05D001207 5.5e-08 62.0 188 29.8
Haze_01333 Corylus avellana HOM05D001578 ORTHO05D001207 7.2e-08 61.6 173 25.4
Haze_01338 Corylus avellana HOM05D001578 ORTHO05D001207 7.2e-08 61.6 173 25.4
Lalb_Chr15g0089101 Lupinus albus HOM05D001578 ORTHO05D001207 7.2e-08 61.6 144 27.8
Medtr4g122800 Medicago truncatula HOM05D001578 ORTHO05D001207 7.2e-08 61.6 142 26.8
RcHm_v2.0_Chr4g0425961 Rosa chinensis HOM05D001578 ORTHO05D001207 7.2e-08 61.6 151 29.8
AT1G47960 Arabidopsis thaliana HOM05D001578 ORTHO05D001207 9.5e-08 61.2 144 30.6
CAN.G338.39 Capsicum annuum HOM05D003146 ORTHO05D001819 9.5e-08 61.2 128 32.0
Ciclev10006791m.g Citrus clementina HOM05D001578 ORTHO05D001207 9.5e-08 61.2 161 27.3
FAN07G1428 Fragaria x ananassa HOM05D001578 ORTHO05D001207 9.5e-08 61.2 188 29.8
Nn1g00654 Nelumbo nucifera HOM05D001445 ORTHO05D001261 9.5e-08 61.2 152 33.6
Actinidia21379 Actinidia chinensis HOM05D001578 ORTHO05D001207 1.2e-07 60.8 174 29.3
FAN07G0539 Fragaria x ananassa HOM05D001578 ORTHO05D001207 1.2e-07 60.8 178 27.0
Thecc.01G317500 Theobroma cacao HOM05D001578 ORTHO05D001207 1.2e-07 60.8 147 27.9
Lj3P834T43 Lonicera japonica HOM05D001578 ORTHO05D001207 1.6e-07 60.5 147 27.2
Glyma.20G029000 Glycine max HOM05D001578 ORTHO05D001207 2.1e-07 60.1 144 29.2
Lsat_1_v5_gn_5_185420 Lactuca sativa HOM05D001578 ORTHO05D001207 2.1e-07 60.1 145 31.7
Manes.02G201700 Manihot esculenta HOM05D001578 ORTHO05D001207 2.1e-07 60.1 151 26.5
Prupe.3G007700 Prunus persica HOM05D001578 ORTHO05D001207 2.1e-07 60.1 148 31.1
PGR004G1348 Punica granatum HOM05D008403 ORTHO05D010317 2.1e-07 60.1 150 25.3
BraA01t03776Z Brassica rapa HOM05D026427 ORTHO05D027957 2.8e-07 59.7 50 58.0
FAN18G0021 Fragaria x ananassa HOM05D001578 ORTHO05D001207 2.8e-07 59.7 173 27.7
Rhsim04G0241400 Rhododendron simsii HOM05D001578 ORTHO05D001207 2.8e-07 59.7 106 31.1
MELO3C017187.2 Cucumis melo HOM05D001445 ORTHO05D001261 3.6e-07 59.3 178 30.9
Dinv29548 Davidia involucrata HOM05D003146 ORTHO05D001819 3.6e-07 59.3 155 27.1
Lj4g0009388 Lotus japonicus HOM05D001578 ORTHO05D001207 3.6e-07 59.3 172 27.9
Medtr4g122760 Medicago truncatula HOM05D001578 ORTHO05D001207 3.6e-07 59.3 175 25.7
Solyc03g112180.1 Solanum lycopersicum HOM05D003146 ORTHO05D001819 4.7e-07 58.9 132 29.5
A01p37150 Brassica napus HOM05D026427 ORTHO05D027957 6.1e-07 58.5 50 58.0
PGR004G2081 Punica granatum HOM05D003146 ORTHO05D001819 6.1e-07 58.5 144 24.3
MSTRG.24828 Avicennia marina HOM05D001578 ORTHO05D001207 1.0e-06 57.8 174 29.3
Eucgr.H04068 Eucalyptus grandis HOM05D001578 ORTHO05D001207 1.0e-06 57.8 166 25.3
Eucgr.L02840 Eucalyptus grandis HOM05D001578 ORTHO05D001207 1.0e-06 57.8 166 25.3
BolC1t04675H Brassica oleracea HOM05D026427 ORTHO05D027957 1.4e-06 57.4 50 56.0
Peaxi162Scf00228g00064 Petunia axillaris HOM05D001578 ORTHO05D001207 1.4e-06 57.4 147 27.9
RcHm_v2.0_Chr4g0432401 Rosa chinensis HOM05D001578 ORTHO05D001207 1.4e-06 57.4 181 24.3
vmacro15637 Vaccinium macrocarpon HOM05D000074 ORTHO05D001262 1.4e-06 57.4 156 29.5
FAN07G2406 Fragaria x ananassa HOM05D001578 ORTHO05D001207 1.8e-06 57.0 156 29.5
SalBow8G1966 Salvia bowleyana HOM05D001578 ORTHO05D001207 1.8e-06 57.0 176 27.3
SalBow8G3310 Salvia bowleyana HOM05D001578 ORTHO05D001207 1.8e-06 57.0 176 27.3
FvH4_4g14140 Fragaria vesca HOM05D001578 ORTHO05D001207 2.3e-06 56.6 146 28.8
FvH4_4g20510 Fragaria vesca HOM05D001578 ORTHO05D001207 2.3e-06 56.6 185 27.6
FvH4_5g04330 Fragaria vesca HOM05D001578 ORTHO05D001207 2.3e-06 56.6 169 27.2
Rhsim04G0244100 Rhododendron simsii HOM05D003146 ORTHO05D001819 2.3e-06 56.6 156 30.1
QL06p012826 Quercus lobata HOM05D001578 ORTHO05D001207 3.0e-06 56.2 177 24.3
Actinidia18487 Actinidia chinensis HOM05D003146 ORTHO05D001819 4.0e-06 55.8 77 35.1
ECA233G4032 Erigeron canadensis HOM05D001578 ORTHO05D001207 4.0e-06 55.8 149 26.8
Migut.N00030 Erythranthe guttata HOM05D001578 ORTHO05D001207 4.0e-06 55.8 142 31.0
Lj3P834T42 Lonicera japonica HOM05D001578 ORTHO05D001207 4.0e-06 55.8 149 28.9
MD16G1150600 Malus domestica HOM05D001578 ORTHO05D001207 4.0e-06 55.8 109 29.4
QL04p007223 Quercus lobata HOM05D003146 ORTHO05D001819 4.0e-06 55.8 173 26.6
Actinidia36483 Actinidia chinensis HOM05D000573 ORTHO05D001819 5.2e-06 55.5 116 33.6
Atru.chr6.1289 Acer truncatum HOM05D004113 ORTHO05D001207 6.8e-06 55.1 158 29.7
Cfa015284 Carpinus fangiana HOM05D001578 ORTHO05D001207 6.8e-06 55.1 144 25.0


User provided reference genes

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