Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G17140 Arabidopsis thaliana HOM05D001578 ORTHO05D001207 9.7e-56 219.9 113 100.0
AL3G30120 Arabidopsis lyrata HOM05D001578 ORTHO05D001207 6.3e-47 190.7 101 92.1
BolC1t04676H Brassica oleracea HOM05D001578 ORTHO05D001207 2.2e-44 182.2 101 86.1
A01p37160 Brassica napus HOM05D001578 ORTHO05D001207 5.0e-44 181.0 101 85.1
BraA01t03777Z Brassica rapa HOM05D001578 ORTHO05D001207 5.0e-44 181.0 101 85.1
C01p47100 Brassica napus HOM05D001578 ORTHO05D001207 6.5e-44 180.6 101 85.1
BcaC09g48670 Brassica carinata HOM05D001578 ORTHO05D001207 2.5e-43 178.7 101 84.2
Carub.0003s1688 Capsella rubella HOM05D001578 ORTHO05D001207 1.0e-41 173.3 101 83.2
BcaB04g20862 Brassica carinata HOM05D001578 ORTHO05D001207 3.0e-41 171.8 101 82.2
Thhalv10021672m.g Eutrema salsugineum HOM05D001578 ORTHO05D001207 1.5e-40 169.5 101 80.2
BolC3t17145H Brassica oleracea HOM05D001578 ORTHO05D001207 7.5e-40 167.2 113 74.3
CARHR092390 Cardamine hirsuta HOM05D001578 ORTHO05D001207 5.9e-37 157.5 100 78.0
BcaB04g18932 Brassica carinata HOM05D001578 ORTHO05D001207 1.7e-36 156.0 101 77.2
CARHR268400 Cardamine hirsuta HOM05D001578 ORTHO05D001207 8.5e-36 153.7 111 71.2
BcaC01g03784 Brassica carinata HOM05D001578 ORTHO05D001207 4.0e-33 144.8 93 75.3
BraA03t13160Z Brassica rapa HOM05D001578 ORTHO05D001207 1.6e-29 132.9 99 65.7
CARHR088530 Cardamine hirsuta HOM05D001578 ORTHO05D001207 1.6e-26 122.9 102 64.7
AL1G54460 Arabidopsis lyrata HOM05D001578 ORTHO05D001207 3.6e-26 121.7 101 64.4
Carub.0001s3704 Capsella rubella HOM05D001578 ORTHO05D001207 4.0e-25 118.2 101 62.4
CARHR037580 Cardamine hirsuta HOM05D001578 ORTHO05D001207 5.2e-25 117.9 109 57.8
BcaC08g42990 Brassica carinata HOM05D001578 ORTHO05D001207 1.2e-24 116.7 101 61.4
C06p02320 Brassica napus HOM05D001578 ORTHO05D001207 1.2e-24 116.7 101 61.4
BolC6t35358H Brassica oleracea HOM05D001578 ORTHO05D001207 1.2e-24 116.7 101 61.4
BraA06t23683Z Brassica rapa HOM05D001578 ORTHO05D001207 1.7e-23 112.8 101 59.4
BcaB07g33804 Brassica carinata HOM05D001578 ORTHO05D001207 2.2e-23 112.5 101 60.4
A06p04790 Brassica napus HOM05D001578 ORTHO05D001207 2.2e-23 112.5 101 59.4
Thhalv10011825m.g Eutrema salsugineum HOM05D001578 ORTHO05D001207 3.7e-23 111.7 101 59.4
AT1G47960 Arabidopsis thaliana HOM05D001578 ORTHO05D001207 4.9e-23 111.3 95 61.1
Aa31LG10G5830 Aethionema arabicum HOM05D001578 ORTHO05D001207 9.2e-22 107.1 95 58.9
CARHR088540 Cardamine hirsuta HOM05D001578 ORTHO05D001207 3.0e-20 102.1 99 55.6
THA.LOC104820316 Tarenaya hassleriana HOM05D001578 ORTHO05D001207 3.9e-20 101.7 102 53.9
Glyma.17G036300 Glycine max HOM05D001578 ORTHO05D001207 1.4e-14 83.2 86 47.7
Oeu016575.1 Olea europaea HOM05D001578 ORTHO05D001207 5.4e-14 81.3 101 43.6
HanXRQChr13g0395221 Helianthus annuus HOM05D001578 ORTHO05D001207 7.0e-14 80.9 104 44.2
Glyma.20G028700 Glycine max HOM05D001578 ORTHO05D001207 2.7e-13 79.0 97 47.4
Actinidia18466 Actinidia chinensis HOM05D001578 ORTHO05D001207 3.5e-13 78.6 112 42.9
Glyma.20G029700 Glycine max HOM05D001578 ORTHO05D001207 3.5e-13 78.6 81 53.1
Glyma.20G029200 Glycine max HOM05D001578 ORTHO05D001207 6.0e-13 77.8 97 47.4
Glyma.20G029500 Glycine max HOM05D001578 ORTHO05D001207 6.0e-13 77.8 97 47.4
Lj4g0009388 Lotus japonicus HOM05D001578 ORTHO05D001207 7.8e-13 77.4 87 46.0
ECA233G5780 Erigeron canadensis HOM05D001578 ORTHO05D001207 1.3e-12 76.6 104 41.3
Haze_01334 Corylus avellana HOM05D001578 ORTHO05D001207 3.9e-12 75.1 98 41.8
Haze_01339 Corylus avellana HOM05D001578 ORTHO05D001207 3.9e-12 75.1 98 41.8
Glyma.20G029000 Glycine max HOM05D001578 ORTHO05D001207 5.0e-12 74.7 81 48.1
Lsat_1_v5_gn_5_185380 Lactuca sativa HOM05D001578 ORTHO05D001207 5.0e-12 74.7 102 44.1
Lsat_1_v5_gn_5_185420 Lactuca sativa HOM05D001578 ORTHO05D001207 5.0e-12 74.7 102 44.1
TPR.G25407 Trifolium pratense HOM05D001578 ORTHO05D001207 5.0e-12 74.7 99 43.4
Glyma.20G028900 Glycine max HOM05D001578 ORTHO05D001207 6.6e-12 74.3 81 50.6
Medtr4g122890 Medicago truncatula HOM05D001578 ORTHO05D001207 6.6e-12 74.3 98 45.9
Sabra10G0043600 Salix brachista HOM05D001578 ORTHO05D001207 1.5e-11 73.2 102 43.1
Potri.010G063000 Populus trichocarpa HOM05D001578 ORTHO05D001207 4.3e-11 71.6 93 45.2
CSS0020686 Camellia sinensis var. sinensis HOM05D001578 ORTHO05D001207 5.6e-11 71.2 97 43.3
Oeu027346.1 Olea europaea HOM05D001578 ORTHO05D001207 5.6e-11 71.2 102 36.3
Phvul.003G117100 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 5.6e-11 71.2 86 46.5
Lsat_1_v5_gn_7_59300 Lactuca sativa HOM05D001578 ORTHO05D001207 7.3e-11 70.9 116 41.4
Lsat_1_v5_gn_7_59360 Lactuca sativa HOM05D001578 ORTHO05D001207 7.3e-11 70.9 116 41.4
Lsat_1_v5_gn_7_59420 Lactuca sativa HOM05D001578 ORTHO05D001207 7.3e-11 70.9 116 41.4
VMungo1215G1199 Vigna mungo HOM05D001578 ORTHO05D001207 7.3e-11 70.9 82 48.8
SGA_v2.0_scaffold246G44798 Striga asiatica HOM05D001578 ORTHO05D001207 9.5e-11 70.5 93 39.8
TPR.G25429 Trifolium pratense HOM05D001578 ORTHO05D001207 1.2e-10 70.1 88 45.5
Lj6g0013229 Lotus japonicus HOM05D001578 ORTHO05D001207 1.6e-10 69.7 111 43.2
MSTRG.24829 Avicennia marina HOM05D001578 ORTHO05D001207 2.1e-10 69.3 104 39.4
CSS0012414 Camellia sinensis var. sinensis HOM05D001578 ORTHO05D001207 2.1e-10 69.3 97 42.3
Lsat_1_v5_gn_6_301 Lactuca sativa HOM05D001578 ORTHO05D001207 2.8e-10 68.9 115 37.4
MSTRG.24828 Avicennia marina HOM05D001578 ORTHO05D001207 3.6e-10 68.6 90 44.4
Ca_21410_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 4.7e-10 68.2 98 41.8
Migut.N00031 Erythranthe guttata HOM05D001578 ORTHO05D001207 4.7e-10 68.2 119 39.5
Glyma.07G237300 Glycine max HOM05D001578 ORTHO05D001207 8.1e-10 67.4 82 43.9
Lalb_Chr12g0200781 Lupinus albus HOM05D001578 ORTHO05D001207 8.1e-10 67.4 86 46.5
ECA233G4032 Erigeron canadensis HOM05D001578 ORTHO05D001207 1.1e-09 67.0 102 37.3
TPR.G25401 Trifolium pratense HOM05D001578 ORTHO05D001207 1.1e-09 67.0 88 46.6
HanXRQChr13g0395201 Helianthus annuus HOM05D001578 ORTHO05D001207 1.4e-09 66.6 102 39.2
Sabra10G0043700 Salix brachista HOM05D001578 ORTHO05D001207 1.4e-09 66.6 97 42.3
CiPaw.01G135900 Carya illinoinensis HOM05D001578 ORTHO05D001207 1.8e-09 66.2 83 42.2
Manes.03G207100 Manihot esculenta HOM05D001578 ORTHO05D001207 1.8e-09 66.2 97 39.2
Medtr4g122750 Medicago truncatula HOM05D001578 ORTHO05D001207 1.8e-09 66.2 96 37.5
Phvul.003G117400 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 2.3e-09 65.9 85 43.5
Cpa.g.sc9.25 Carica papaya HOM05D001578 ORTHO05D001207 4.0e-09 65.1 109 41.3
Solyc12g099190.1 Solanum lycopersicum HOM05D001578 ORTHO05D001207 4.0e-09 65.1 101 36.6
Sopen12g033890 Solanum pennellii HOM05D001578 ORTHO05D001207 4.0e-09 65.1 80 45.0
CiPaw.01G135600 Carya illinoinensis HOM05D001578 ORTHO05D001207 5.2e-09 64.7 107 37.4
Lalb_Chr07g0181941 Lupinus albus HOM05D001578 ORTHO05D001207 6.8e-09 64.3 86 43.0
Nitab4.5_0000651g0280 Nicotiana tabacum HOM05D001578 ORTHO05D001207 8.9e-09 63.9 79 45.6
Ca_21409_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 1.2e-08 63.5 82 42.7
Ca_21424_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 1.2e-08 63.5 82 42.7
Ca_21425_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 1.2e-08 63.5 82 42.7
Ciclev10006791m.g Citrus clementina HOM05D001578 ORTHO05D001207 1.2e-08 63.5 102 38.2
HanXRQChr13g0395161 Helianthus annuus HOM05D001578 ORTHO05D001207 1.2e-08 63.5 101 36.6
Nitab4.5_0002150g0010 Nicotiana tabacum HOM05D001578 ORTHO05D001207 1.2e-08 63.5 116 35.3
Sopen12g033870 Solanum pennellii HOM05D001578 ORTHO05D001207 1.2e-08 63.5 101 34.7
HanXRQChr13g0395171 Helianthus annuus HOM05D001578 ORTHO05D001207 1.5e-08 63.2 102 40.2
HanXRQChr13g0395211 Helianthus annuus HOM05D001578 ORTHO05D001207 2.0e-08 62.8 102 39.2
Lj3P834T43 Lonicera japonica HOM05D001578 ORTHO05D001207 2.0e-08 62.8 97 38.1
Manes.15G002100 Manihot esculenta HOM05D001578 ORTHO05D001207 2.0e-08 62.8 102 37.3
PGSC0003DMG400004618 Solanum tuberosum HOM05D001578 ORTHO05D001207 2.0e-08 62.8 80 43.8
CAN.G1075.28 Capsicum annuum HOM05D001578 ORTHO05D001207 3.4e-08 62.0 81 45.7
Psat0s740g0160 Pisum sativum HOM05D001578 ORTHO05D001207 3.4e-08 62.0 111 36.0
Solyc12g099210.2 Solanum lycopersicum HOM05D001578 ORTHO05D001207 3.4e-08 62.0 80 43.8
FvH4_4g20440 Fragaria vesca HOM05D001578 ORTHO05D001207 4.4e-08 61.6 102 38.2
FAN07G2152 Fragaria x ananassa HOM05D001578 ORTHO05D001207 4.4e-08 61.6 102 38.2
FAN12G2021 Fragaria x ananassa HOM05D001578 ORTHO05D001207 4.4e-08 61.6 102 38.2
MD13G1150400 Malus domestica HOM05D001578 ORTHO05D001207 4.4e-08 61.6 112 33.0
Ca_21411_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 5.8e-08 61.2 80 40.0
QL06p012826 Quercus lobata HOM05D001578 ORTHO05D001207 5.8e-08 61.2 89 39.3
Ah.08g216400 Amaranthus hybridus HOM05D001578 ORTHO05D001207 9.9e-08 60.5 85 36.5
CAN.G484.68 Capsicum annuum HOM05D001578 ORTHO05D001207 1.3e-07 60.1 85 43.5
HanXRQChr13g0393461 Helianthus annuus HOM05D001578 ORTHO05D001207 1.3e-07 60.1 101 35.6
Phvul.003G117300 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 1.3e-07 60.1 85 41.2
CAN.G305.59 Capsicum annuum HOM05D001578 ORTHO05D001207 1.7e-07 59.7 80 43.8
COL.COLO4_34578 Corchorus olitorius HOM05D001578 ORTHO05D001207 1.7e-07 59.7 110 38.2
Lj1g0019408 Lotus japonicus HOM05D001578 ORTHO05D001207 1.7e-07 59.7 101 40.6
Gohir.D10G180600 Gossypium hirsutum HOM05D001578 ORTHO05D001207 2.9e-07 58.9 101 37.6
Gorai.011G202100 Gossypium raimondii HOM05D001578 ORTHO05D001207 2.9e-07 58.9 101 37.6
RcHm_v2.0_Chr4g0399701 Rosa chinensis HOM05D001578 ORTHO05D001207 4.9e-07 58.2 98 33.7
Migut.N00030 Erythranthe guttata HOM05D001578 ORTHO05D001207 8.3e-07 57.4 59 49.2
SalBow5G1261 Salvia bowleyana HOM05D001578 ORTHO05D001207 8.3e-07 57.4 100 37.0
CARHR037570 Cardamine hirsuta HOM05D001578 ORTHO05D001207 1.1e-06 57.0 58 50.0
Gohir.A10G174050 Gossypium hirsutum HOM05D001578 ORTHO05D001207 1.4e-06 56.6 101 36.6
Thecc.04G304900 Theobroma cacao HOM05D001578 ORTHO05D001207 1.4e-06 56.6 88 38.6
EL10Ac7g16355 Beta vulgaris HOM05D001578 ORTHO05D001207 1.9e-06 56.2 85 35.3
Peaxi162Scf01160g00142 Petunia axillaris HOM05D001578 ORTHO05D001207 1.9e-06 56.2 82 39.0
TWI75G0074 Tripterygium wilfordii HOM05D001578 ORTHO05D001207 1.9e-06 56.2 80 38.8
Cc03_g00590 Coffea canephora HOM05D001578 ORTHO05D001207 2.4e-06 55.8 96 35.4
MD13G1150300 Malus domestica HOM05D001578 ORTHO05D001207 2.4e-06 55.8 89 40.4
Psat0s4829g0040 Pisum sativum HOM05D001578 ORTHO05D001207 2.4e-06 55.8 112 33.9
Atru.chr4.3057 Acer truncatum HOM05D001578 ORTHO05D001207 4.1e-06 55.1 96 39.6
Ah.08g216390 Amaranthus hybridus HOM05D001578 ORTHO05D001207 5.4e-06 54.7 81 35.8
CAN.G1359.1 Capsicum annuum HOM05D001578 ORTHO05D001207 5.4e-06 54.7 80 41.2
Duzib177G0524 Durio zibethinus HOM05D001578 ORTHO05D001207 5.4e-06 54.7 84 35.7
Lj1g0016642 Lotus japonicus HOM05D001578 ORTHO05D001207 5.4e-06 54.7 101 39.6
Solyc12g099200.2 Solanum lycopersicum HOM05D001578 ORTHO05D001207 5.4e-06 54.7 85 41.2
Sopen12g033880 Solanum pennellii HOM05D001578 ORTHO05D001207 5.4e-06 54.7 85 41.2
PGSC0003DMG400004617 Solanum tuberosum HOM05D001578 ORTHO05D001207 5.4e-06 54.7 85 41.2
FAN18G0021 Fragaria x ananassa HOM05D001578 ORTHO05D001207 9.2e-06 53.9 103 36.9
PGR004G1767 Punica granatum HOM05D001578 ORTHO05D001207 9.2e-06 53.9 86 40.7
Thecc.08G179500 Theobroma cacao HOM05D001705 ORTHO05D008928 9.2e-06 53.9 92 33.7


User provided reference genes

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