Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G17130 Arabidopsis thaliana HOM05D001578 ORTHO05D001207 1.8e-96 355.9 184 100.0
AL3G30110 Arabidopsis lyrata HOM05D001578 ORTHO05D001207 2.6e-90 335.5 181 95.6
Carub.0003s1687 Capsella rubella HOM05D001578 ORTHO05D001207 1.3e-86 323.2 185 91.4
CARHR092380 Cardamine hirsuta HOM05D001578 ORTHO05D001207 3.6e-84 315.1 182 87.4
Sp3g15350 Schrenkiella parvula HOM05D001578 ORTHO05D001207 2.2e-81 305.8 184 84.8
BolC5t33672H Brassica oleracea HOM05D001578 ORTHO05D001207 2.1e-79 299.3 182 84.1
A05p32610 Brassica napus HOM05D001578 ORTHO05D001207 3.5e-79 298.5 182 84.1
BraA05t22085Z Brassica rapa HOM05D001578 ORTHO05D001207 3.5e-79 298.5 182 84.1
Thhalv10021610m.g Eutrema salsugineum HOM05D001578 ORTHO05D001207 1.3e-78 296.6 182 81.9
BcaC05g28823 Brassica carinata HOM05D001578 ORTHO05D001207 2.3e-78 295.8 182 83.0
C05p49310 Brassica napus HOM05D001578 ORTHO05D001207 2.3e-78 295.8 182 83.0
BcaB04g20863 Brassica carinata HOM05D001578 ORTHO05D001207 1.9e-77 292.7 182 82.4
BcaB04g18931 Brassica carinata HOM05D001578 ORTHO05D001207 1.6e-76 289.7 181 81.2
BcaB06g25805 Brassica carinata HOM05D001578 ORTHO05D001207 4.7e-76 288.1 175 84.0
BraA03t13159Z Brassica rapa HOM05D001578 ORTHO05D001207 2.0e-74 282.7 181 80.1
A03p40090 Brassica napus HOM05D001578 ORTHO05D001207 2.6e-74 282.3 181 80.1
BraA01t03778Z Brassica rapa HOM05D001578 ORTHO05D001207 2.6e-74 282.3 182 79.7
A01p37170 Brassica napus HOM05D001578 ORTHO05D001207 4.4e-74 281.6 182 79.7
BcaC01g03785 Brassica carinata HOM05D001578 ORTHO05D001207 5.8e-74 281.2 181 79.6
C03p48660 Brassica napus HOM05D001578 ORTHO05D001207 5.8e-74 281.2 181 79.6
BolC1t04679H Brassica oleracea HOM05D001578 ORTHO05D001207 1.7e-73 279.6 182 79.1
BolC3t17144H Brassica oleracea HOM05D001578 ORTHO05D001207 1.9e-72 276.2 189 76.2
Aa31LG8G4140 Aethionema arabicum HOM05D001578 ORTHO05D001207 6.8e-67 257.7 180 73.9
BcaC09g48669 Brassica carinata HOM05D001578 ORTHO05D001207 9.0e-59 230.7 182 69.8
THA.LOC104820315 Tarenaya hassleriana HOM05D001578 ORTHO05D001207 3.5e-55 218.8 170 67.1
C01p47110 Brassica napus HOM05D001578 ORTHO05D001207 2.5e-53 212.6 182 66.5
Cpa.g.sc9.27 Carica papaya HOM05D001578 ORTHO05D001207 2.3e-38 162.9 171 52.6
Ciclev10006032m.g Citrus clementina HOM05D001578 ORTHO05D001207 1.9e-37 159.8 172 48.3
Manes.15G002000 Manihot esculenta HOM05D001578 ORTHO05D001207 2.8e-36 156.0 179 49.7
Potri.008G102600 Populus trichocarpa HOM05D001578 ORTHO05D001207 6.2e-36 154.8 180 47.8
Sabra08G0077400 Salix brachista HOM05D001578 ORTHO05D001207 6.2e-36 154.8 181 49.2
Atru.chr4.3054 Acer truncatum HOM05D001578 ORTHO05D001207 8.4e-33 144.4 155 49.0
Duzib151G1057 Durio zibethinus HOM05D001578 ORTHO05D001207 1.1e-32 144.1 173 46.8
Gohir.A01G035200 Gossypium hirsutum HOM05D001578 ORTHO05D001207 1.1e-32 144.1 174 46.6
Thecc.04G304700 Theobroma cacao HOM05D001578 ORTHO05D001207 1.1e-32 144.1 186 46.2
COL.COLO4_34581 Corchorus olitorius HOM05D001578 ORTHO05D001207 1.9e-32 143.3 185 45.9
Gohir.D01G023565 Gossypium hirsutum HOM05D001578 ORTHO05D001207 3.2e-32 142.5 174 46.0
Gorai.002G031100 Gossypium raimondii HOM05D001578 ORTHO05D001207 3.2e-32 142.5 174 46.0
Lalb_Chr12g0200791 Lupinus albus HOM05D001578 ORTHO05D001207 7.9e-31 137.9 199 43.2
Duzib052G1048 Durio zibethinus HOM05D001578 ORTHO05D001207 1.3e-30 137.1 180 43.3
Manes.03G207000 Manihot esculenta HOM05D001578 ORTHO05D001207 3.9e-30 135.6 177 42.9
Psat0s740g0040 Pisum sativum HOM05D001578 ORTHO05D001207 6.7e-30 134.8 192 44.3
TWI09G1118 Tripterygium wilfordii HOM05D001578 ORTHO05D001207 1.1e-29 134.0 184 43.5
Medtr4g122740 Medicago truncatula HOM05D001578 ORTHO05D001207 1.5e-29 133.7 186 43.0
Medtr2g033630 Medicago truncatula HOM05D001578 ORTHO05D001207 3.3e-29 132.5 184 40.8
Glyma.07G237500 Glycine max HOM05D001578 ORTHO05D001207 9.7e-29 131.0 188 42.6
VMungo1215G0592 Vigna mungo HOM05D001578 ORTHO05D001207 1.6e-28 130.2 177 41.8
Glyma.17G036100 Glycine max HOM05D001578 ORTHO05D001207 1.1e-27 127.5 183 41.5
Phvul.003G116900 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 1.4e-27 127.1 196 41.3
TPR.G25390 Trifolium pratense HOM05D001578 ORTHO05D001207 1.4e-27 127.1 193 40.4
Glyma.15G138400 Glycine max HOM05D001578 ORTHO05D001207 1.8e-27 126.7 193 39.4
Lj4g0021583 Lotus japonicus HOM05D001578 ORTHO05D001207 3.1e-27 125.9 194 40.7
Lalb_Chr07g0181951 Lupinus albus HOM05D001578 ORTHO05D001207 3.1e-27 125.9 194 42.3
Psat1g162120 Pisum sativum HOM05D001578 ORTHO05D001207 1.2e-26 124.0 193 38.9
Glyma.09G033700 Glycine max HOM05D001578 ORTHO05D001207 2.6e-26 122.9 190 38.4
VMungo0540G0744 Vigna mungo HOM05D001578 ORTHO05D001207 2.6e-26 122.9 158 43.7
RcHm_v2.0_Chr4g0425861 Rosa chinensis HOM05D001578 ORTHO05D001207 7.7e-26 121.3 170 42.4
FvH4_4g20180 Fragaria vesca HOM05D001578 ORTHO05D001207 1.0e-25 120.9 166 41.0
FAN12G2195 Fragaria x ananassa HOM05D001578 ORTHO05D001207 1.0e-25 120.9 166 41.0
Prupe.1G113800 Prunus persica HOM05D001578 ORTHO05D001207 1.3e-25 120.6 186 38.7
FAN07G0539 Fragaria x ananassa HOM05D001578 ORTHO05D001207 1.7e-25 120.2 169 43.2
QL06p012819 Quercus lobata HOM05D001578 ORTHO05D001207 5.0e-25 118.6 190 40.0
Phvul.006G119800 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 6.5e-25 118.2 155 41.3
Haze_01333 Corylus avellana HOM05D001578 ORTHO05D001207 8.5e-25 117.9 174 42.0
Haze_01338 Corylus avellana HOM05D001578 ORTHO05D001207 8.5e-25 117.9 174 42.0
Eucgr.H04067 Eucalyptus grandis HOM05D001578 ORTHO05D001207 8.5e-25 117.9 151 44.4
Lalb_Chr15g0089101 Lupinus albus HOM05D001578 ORTHO05D001207 8.5e-25 117.9 176 40.9
TPR.G33864 Trifolium pratense HOM05D001578 ORTHO05D001207 1.1e-24 117.5 191 38.2
Cfa015284 Carpinus fangiana HOM05D001578 ORTHO05D001207 2.5e-24 116.3 186 38.7
Lj6g0003953 Lotus japonicus HOM05D001578 ORTHO05D001207 3.2e-24 115.9 189 38.1
CiPaw.01G136000 Carya illinoinensis HOM05D001578 ORTHO05D001207 4.2e-24 115.5 189 39.2
MD16G1150200 Malus domestica HOM05D001578 ORTHO05D001207 4.2e-24 115.5 183 39.9
PGR031G1824 Punica granatum HOM05D001578 ORTHO05D001207 4.2e-24 115.5 171 42.1
CANSAT78G0727 Cannabis sativa HOM05D001578 ORTHO05D001207 1.6e-23 113.6 187 37.4
PGR031G2148 Punica granatum HOM05D001578 ORTHO05D001207 2.7e-23 112.8 170 42.9
PGR004G2339 Punica granatum HOM05D001578 ORTHO05D001207 4.6e-23 112.1 185 37.8
MD13G1149800 Malus domestica HOM05D001578 ORTHO05D001207 1.0e-22 110.9 187 38.0
Sabra08G0077500 Salix brachista HOM05D001578 ORTHO05D001207 2.5e-21 106.3 178 38.8
TPR.G25409 Trifolium pratense HOM05D001578 ORTHO05D001207 1.7e-20 103.6 186 36.6
Eucgr.B03967 Eucalyptus grandis HOM05D001578 ORTHO05D001207 2.2e-20 103.2 119 45.4
Medtr4g122720 Medicago truncatula HOM05D001578 ORTHO05D001207 2.4e-19 99.8 192 34.9
Ca_21411_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 6.9e-19 98.2 117 44.4
Psat4g021720 Pisum sativum HOM05D001578 ORTHO05D001207 6.5e-17 91.7 191 35.1
COL.COLO4_34578 Corchorus olitorius HOM05D001578 ORTHO05D001207 1.0e-14 84.3 187 34.2
Gohir.D10G180700 Gossypium hirsutum HOM05D001578 ORTHO05D001207 1.4e-14 84.0 158 32.9
Gohir.A10G174100 Gossypium hirsutum HOM05D001578 ORTHO05D001207 1.8e-14 83.6 158 32.9
MD16G1150100 Malus domestica HOM05D001578 ORTHO05D001207 1.8e-14 83.6 159 35.2
Haze_01334 Corylus avellana HOM05D001578 ORTHO05D001207 5.1e-14 82.0 152 33.6
Haze_01339 Corylus avellana HOM05D001578 ORTHO05D001207 6.7e-14 81.6 152 33.6
Gorai.011G202200 Gossypium raimondii HOM05D001578 ORTHO05D001207 8.8e-14 81.3 158 32.3
Cfa015283 Carpinus fangiana HOM05D001578 ORTHO05D001207 1.1e-13 80.9 173 31.8
Lsat_1_v5_gn_6_301 Lactuca sativa HOM05D001578 ORTHO05D001207 2.0e-13 80.1 163 31.9
Duzib177G0524 Durio zibethinus HOM05D001578 ORTHO05D001207 3.3e-13 79.3 155 33.5
Duzib052G0195 Durio zibethinus HOM05D001578 ORTHO05D001207 4.4e-13 79.0 153 31.4
Duzib151G0695 Durio zibethinus HOM05D001578 ORTHO05D001207 1.7e-12 77.0 187 28.3
Manes.15G002100 Manihot esculenta HOM05D001578 ORTHO05D001207 1.7e-12 77.0 159 34.0
EL10Ac7g16355 Beta vulgaris HOM05D001578 ORTHO05D001207 2.2e-12 76.6 174 31.0
Cpa.g.sc9.25 Carica papaya HOM05D001578 ORTHO05D001207 2.2e-12 76.6 175 34.3
TWI75G0074 Tripterygium wilfordii HOM05D001578 ORTHO05D001207 2.2e-12 76.6 189 27.5
AUR62009839 Chenopodium quinoa HOM05D001578 ORTHO05D001207 2.8e-12 76.3 172 31.4
Medtr4g122718 Medicago truncatula HOM05D001578 ORTHO05D001207 3.7e-12 75.9 117 35.9
Thecc.08G179500 Theobroma cacao HOM05D001705 ORTHO05D008928 4.8e-12 75.5 156 32.7
Gohir.A05G275500 Gossypium hirsutum HOM05D001578 ORTHO05D001207 1.8e-11 73.6 160 30.6
Gohir.D05G277600 Gossypium hirsutum HOM05D001578 ORTHO05D001207 2.4e-11 73.2 160 30.6
AUR62038151 Chenopodium quinoa HOM05D001578 ORTHO05D001207 3.1e-11 72.8 178 29.8
Eucgr.B03968 Eucalyptus grandis HOM05D001578 ORTHO05D001207 4.1e-11 72.4 117 35.9
Ah.08g216390 Amaranthus hybridus HOM05D001578 ORTHO05D001207 5.3e-11 72.0 176 29.5
COL.COLO4_34577 Corchorus olitorius HOM05D001578 ORTHO05D001207 5.3e-11 72.0 176 28.4
SGA_v2.0_scaffold246G44798 Striga asiatica HOM05D001578 ORTHO05D001207 5.3e-11 72.0 178 28.7
Potri.009G083500 Populus trichocarpa HOM05D001578 ORTHO05D001207 7.0e-11 71.6 164 29.3
Thecc.04G305000 Theobroma cacao HOM05D001578 ORTHO05D001207 7.0e-11 71.6 160 28.1
Dinv44262 Davidia involucrata HOM05D001578 ORTHO05D001207 9.1e-11 71.2 167 32.3
ECA233G5780 Erigeron canadensis HOM05D001578 ORTHO05D001207 9.1e-11 71.2 158 27.8
Gorai.009G290600 Gossypium raimondii HOM05D001578 ORTHO05D001207 9.1e-11 71.2 154 31.2
HanXRQChr13g0395221 Helianthus annuus HOM05D001578 ORTHO05D001207 1.6e-10 70.5 173 30.1
Duzib052G0880 Durio zibethinus HOM05D001578 ORTHO05D001207 2.6e-10 69.7 178 29.8
Ca_00963_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 4.5e-10 68.9 93 41.9
COL.COLO4_25141 Corchorus olitorius HOM05D001705 ORTHO05D008928 5.9e-10 68.6 115 38.3
Sabra10G0043600 Salix brachista HOM05D001578 ORTHO05D001207 7.7e-10 68.2 175 30.3
CiPaw.01G135600 Carya illinoinensis HOM05D001578 ORTHO05D001207 1.0e-09 67.8 151 28.5
CiPaw.01G135900 Carya illinoinensis HOM05D001578 ORTHO05D001207 1.0e-09 67.8 151 29.1
Gohir.D10G180600 Gossypium hirsutum HOM05D001578 ORTHO05D001207 1.0e-09 67.8 176 30.1
Gorai.011G202100 Gossypium raimondii HOM05D001578 ORTHO05D001207 1.0e-09 67.8 176 30.1
Manes.03G207100 Manihot esculenta HOM05D001578 ORTHO05D001207 2.9e-09 66.2 176 29.5
Atru.chr4.3056 Acer truncatum HOM05D001578 ORTHO05D001207 3.8e-09 65.9 167 31.1
Actinidia19773 Actinidia chinensis HOM05D003556 ORTHO05D003404 6.5e-09 65.1 159 27.7
Ciclev10006791m.g Citrus clementina HOM05D001578 ORTHO05D001207 1.1e-08 64.3 152 27.0
RcHm_v2.0_Chr2g0143761 Rosa chinensis HOM05D001578 ORTHO05D001207 1.1e-08 64.3 176 28.4
RcHm_v2.0_Chr2g0144321 Rosa chinensis HOM05D001578 ORTHO05D001207 1.1e-08 64.3 176 28.4
RcHm_v2.0_Chr7g0200071 Rosa chinensis HOM05D001578 ORTHO05D001207 1.1e-08 64.3 176 28.4
Actinidia18465 Actinidia chinensis HOM05D001578 ORTHO05D001207 1.9e-08 63.5 163 26.4
Eucgr.H04068 Eucalyptus grandis HOM05D001578 ORTHO05D001207 1.9e-08 63.5 146 30.1
Eucgr.L02840 Eucalyptus grandis HOM05D001578 ORTHO05D001207 1.9e-08 63.5 146 30.1
Ciclev10006511m.g Citrus clementina HOM05D001578 ORTHO05D001207 3.2e-08 62.8 178 29.2
Lsat_1_v5_gn_8_17501 Lactuca sativa HOM05D004113 ORTHO05D005233 4.2e-08 62.4 183 29.5
Lalb_Chr12g0200781 Lupinus albus HOM05D001578 ORTHO05D001207 4.2e-08 62.4 176 27.8
Gohir.A10G174050 Gossypium hirsutum HOM05D001578 ORTHO05D001207 7.2e-08 61.6 174 28.2
MSTRG.24829 Avicennia marina HOM05D001578 ORTHO05D001207 9.4e-08 61.2 166 28.3
Lalb_Chr20g0117771 Lupinus albus HOM05D001578 ORTHO05D001207 9.4e-08 61.2 168 30.4
Potri.010G063000 Populus trichocarpa HOM05D001578 ORTHO05D001207 9.4e-08 61.2 179 30.7
HanXRQChr08g0218241 Helianthus annuus HOM05D004113 ORTHO05D005233 1.2e-07 60.8 180 27.2
Manes.15G098100 Manihot esculenta HOM05D001578 ORTHO05D001207 1.2e-07 60.8 144 30.6
PGR004G1767 Punica granatum HOM05D001578 ORTHO05D001207 1.2e-07 60.8 173 28.3
Carub.0001s3704 Capsella rubella HOM05D001578 ORTHO05D001207 1.6e-07 60.5 170 26.5
Glyma.17G036400 Glycine max HOM05D001578 ORTHO05D001207 1.6e-07 60.5 177 27.7
Sabra10G0043700 Salix brachista HOM05D001578 ORTHO05D001207 1.6e-07 60.5 175 29.1
Manes.02G201700 Manihot esculenta HOM05D001578 ORTHO05D001207 3.6e-07 59.3 183 27.9
PSO724G0052 Papaver somniferum HOM05D004113 ORTHO05D005233 3.6e-07 59.3 167 30.5
PSO724G0234 Papaver somniferum HOM05D004113 ORTHO05D005233 3.6e-07 59.3 167 30.5
Phvul.003G117100 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 3.6e-07 59.3 130 28.5
CSS0012414 Camellia sinensis var. sinensis HOM05D001578 ORTHO05D001207 6.1e-07 58.5 181 30.9
PSO837G0066 Papaver somniferum HOM05D004113 ORTHO05D005233 6.1e-07 58.5 170 27.6
PSO017G2443 Papaver somniferum HOM05D004113 ORTHO05D005233 8.0e-07 58.2 170 27.6
CSS0025537 Camellia sinensis var. sinensis HOM05D003556 ORTHO05D003404 1.4e-06 57.4 155 23.2
CSS0050483 Camellia sinensis var. sinensis HOM05D003556 ORTHO05D003404 1.4e-06 57.4 155 23.2
Oeu004248.1 Olea europaea HOM05D004113 ORTHO05D005233 1.4e-06 57.4 173 26.6
CSS0020686 Camellia sinensis var. sinensis HOM05D001578 ORTHO05D001207 1.8e-06 57.0 178 30.9
TAR365G0682 Trochodendron aralioides HOM05D001578 ORTHO05D001207 1.8e-06 57.0 146 28.8
Cc03_g00600 Coffea canephora HOM05D001578 ORTHO05D001207 2.3e-06 56.6 164 28.0
Peaxi162Scf00228g00064 Petunia axillaris HOM05D001578 ORTHO05D001207 2.3e-06 56.6 167 25.1
SalBow8G1966 Salvia bowleyana HOM05D001578 ORTHO05D001207 2.3e-06 56.6 172 27.3
SalBow8G3310 Salvia bowleyana HOM05D001578 ORTHO05D001207 2.3e-06 56.6 172 27.3
Eucgr.L02838 Eucalyptus grandis HOM05D001578 ORTHO05D001207 3.0e-06 56.2 146 30.1
RhsimUnG0017500 Rhododendron simsii HOM05D004113 ORTHO05D005233 3.0e-06 56.2 179 27.4
RhsimUnG0133000 Rhododendron simsii HOM05D004113 ORTHO05D005233 3.0e-06 56.2 180 27.8
FvH4_4g20430 Fragaria vesca HOM05D001578 ORTHO05D001207 4.0e-06 55.8 154 29.9
Ciclev10002648m.g Citrus clementina HOM05D003556 ORTHO05D003404 5.2e-06 55.5 177 26.6
SGA_v2.0_scaffold77G25252 Striga asiatica HOM05D001445 ORTHO05D001261 5.2e-06 55.5 179 29.1
Thecc.04G304900 Theobroma cacao HOM05D001578 ORTHO05D001207 5.2e-06 55.5 131 30.5
ATR1149G037 Amborella trichopoda HOM05D003556 ORTHO05D003404 6.7e-06 55.1 166 29.5
Ca_21410_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 6.7e-06 55.1 151 26.5
Glyma.20G029700 Glycine max HOM05D001578 ORTHO05D001207 6.7e-06 55.1 159 26.4
THA.LOC104820316 Tarenaya hassleriana HOM05D001578 ORTHO05D001207 6.7e-06 55.1 166 25.9
Medtr4g122800 Medicago truncatula HOM05D001578 ORTHO05D001207 8.8e-06 54.7 177 24.9


User provided reference genes

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