Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G17030 Arabidopsis thaliana HOM05D006559 ORTHO05D008867 0.0e+00 1348.2 669 100.0
AL3G30010 Arabidopsis lyrata HOM05D006559 ORTHO05D008867 0.0e+00 1246.5 672 92.6
Sp3g15250 Schrenkiella parvula HOM05D006559 ORTHO05D008867 0.0e+00 1199.9 676 88.6
Thhalv10020210m.g Eutrema salsugineum HOM05D006559 ORTHO05D008867 0.0e+00 1181.0 681 87.4
Carub.0003s1678 Capsella rubella HOM05D006559 ORTHO05D008867 0.0e+00 1169.1 679 86.3
A01p37300 Brassica napus HOM05D006559 ORTHO05D008867 0.0e+00 1156.7 676 85.5
BraA01t03788Z Brassica rapa HOM05D006559 ORTHO05D008867 0.0e+00 1156.7 676 85.4
BcaC09g48654 Brassica carinata HOM05D006559 ORTHO05D008867 0.0e+00 1149.8 673 85.1
BolC1t04694H Brassica oleracea HOM05D006559 ORTHO05D008867 0.0e+00 1149.8 674 85.3
C01p47240 Brassica napus HOM05D006559 ORTHO05D008867 0.0e+00 1142.9 674 84.9
Aa31LG8G4060 Aethionema arabicum HOM05D006559 ORTHO05D008867 0.0e+00 1119.0 680 81.5
THA.LOC104820440 Tarenaya hassleriana HOM05D006559 ORTHO05D008867 1.5e-273 946.0 659 71.3
Cpa.g.sc9.65 Carica papaya HOM05D006559 ORTHO05D008867 1.6e-243 846.3 670 63.9
vmacro08053 Vaccinium macrocarpon HOM05D006559 ORTHO05D008867 7.6e-233 810.8 671 61.7
Thecc.04G299700 Theobroma cacao HOM05D006559 ORTHO05D008867 6.5e-232 807.7 679 60.8
Rhsim04G0235400 Rhododendron simsii HOM05D006559 ORTHO05D008867 3.2e-231 805.4 660 62.0
Gohir.A09G234700 Gossypium hirsutum HOM05D006559 ORTHO05D008867 1.0e-229 800.4 687 58.7
CANSAT64G0770 Cannabis sativa HOM05D006559 ORTHO05D008867 5.1e-229 798.1 659 60.2
Ciclev10004497m.g Citrus clementina HOM05D006559 ORTHO05D008867 8.7e-229 797.3 681 60.5
Dinv44291 Davidia involucrata HOM05D006559 ORTHO05D008867 1.1e-228 797.0 663 60.0
Cfa008663 Carpinus fangiana HOM05D006559 ORTHO05D008867 2.5e-228 795.8 672 58.8
TWI73G0870 Tripterygium wilfordii HOM05D006559 ORTHO05D008867 2.5e-228 795.8 676 59.5
Gohir.D09G235500 Gossypium hirsutum HOM05D006559 ORTHO05D008867 4.3e-228 795.0 687 58.5
Gorai.006G258500 Gossypium raimondii HOM05D006559 ORTHO05D008867 2.8e-227 792.3 687 58.4
Potri.010G144400 Populus trichocarpa HOM05D006559 ORTHO05D008867 1.8e-226 789.6 662 60.3
Manes.03G204300 Manihot esculenta HOM05D006559 ORTHO05D008867 9.0e-226 787.3 670 59.9
Sabra10G0111500 Salix brachista HOM05D006559 ORTHO05D008867 2.6e-225 785.8 664 59.5
Hma1.2p1_0078F.1_g039970 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 7.6e-225 784.3 634 60.6
GSVIVG01035001001 Vitis vinifera HOM05D006559 ORTHO05D008867 1.5e-220 770.0 670 58.2
Eucgr.H04041 Eucalyptus grandis HOM05D006559 ORTHO05D008867 1.4e-218 763.5 660 59.2
Sc19g0003140 Simmondsia chinensis HOM05D006559 ORTHO05D008867 4.5e-217 758.4 678 57.7
Hund11970 Selenicereus undatus HOM05D006559 ORTHO05D008867 1.7e-216 756.5 677 58.2
Medtr4g122000 Medicago truncatula HOM05D006559 ORTHO05D008867 1.1e-212 743.8 663 58.8
Lj4g0009670 Lotus japonicus HOM05D006559 ORTHO05D008867 1.5e-212 743.4 664 57.7
Haze_11682 Corylus avellana HOM05D006559 ORTHO05D008867 2.0e-212 743.0 732 53.6
Psat4g024080 Pisum sativum HOM05D006559 ORTHO05D008867 7.4e-212 741.1 662 57.3
RcHm_v2.0_Chr4g0424901 Rosa chinensis HOM05D006559 ORTHO05D008867 9.7e-212 740.7 673 56.5
Ca_21444_v3 Cicer arietinum L. HOM05D006559 ORTHO05D008867 2.8e-211 739.2 663 57.9
VMungo1215G0265 Vigna mungo HOM05D006559 ORTHO05D008867 8.2e-211 737.6 662 57.1
Cc03_g00890 Coffea canephora HOM05D006559 ORTHO05D008867 1.4e-210 736.9 670 56.6
Lalb_Chr07g0182081 Lupinus albus HOM05D006559 ORTHO05D008867 1.4e-210 736.9 665 57.6
CAN.G244.5 Capsicum annuum HOM05D006559 ORTHO05D008867 4.1e-210 735.3 659 56.9
FvH4_4g19640 Fragaria vesca HOM05D006559 ORTHO05D008867 1.2e-209 733.8 673 55.9
CSS0039775 Camellia sinensis var. sinensis HOM05D006559 ORTHO05D008867 2.0e-209 733.0 664 56.6
Glyma.07G240200 Glycine max HOM05D006559 ORTHO05D008867 2.9e-208 729.2 661 57.8
PGSC0003DMG400021843 Solanum tuberosum HOM05D006559 ORTHO05D008867 3.8e-208 728.8 658 56.4
Migut.G00055 Erythranthe guttata HOM05D006559 ORTHO05D008867 1.1e-207 727.2 677 54.7
Sopen01g026050 Solanum pennellii HOM05D006559 ORTHO05D008867 3.2e-207 725.7 670 55.2
CsaV3_3G015150 Cucumis sativus L. HOM05D006559 ORTHO05D008867 7.2e-207 724.5 675 55.4
Glyma.17G033200 Glycine max HOM05D006559 ORTHO05D008867 7.2e-207 724.5 671 56.9
DCAR_002509 Daucus carota HOM05D006559 ORTHO05D008867 1.2e-206 723.8 665 57.0
FAN12G1983 Fragaria x ananassa HOM05D006559 ORTHO05D008867 2.7e-206 722.6 685 54.9
Nitab4.5_0011895g0010 Nicotiana tabacum HOM05D006559 ORTHO05D008867 4.7e-206 721.8 676 54.9
Peaxi162Scf00228g00226 Petunia axillaris HOM05D006559 ORTHO05D008867 4.7e-206 721.8 667 56.5
Solyc01g059920.4 Solanum lycopersicum HOM05D006559 ORTHO05D008867 1.4e-205 720.3 670 55.1
AUR62039288 Chenopodium quinoa HOM05D006559 ORTHO05D008867 2.3e-205 719.5 691 54.4
MELO3C006713.2 Cucumis melo HOM05D006559 ORTHO05D008867 3.0e-205 719.2 685 55.5
SGA_v2.0_scaffold18G08402 Striga asiatica HOM05D006559 ORTHO05D008867 3.0e-205 719.2 664 55.3
Aqoxy2G02735 Aquilegia oxysepala HOM05D006559 ORTHO05D008867 3.9e-205 718.8 671 56.8
arahy.Tifrunner.gnm1.ann1.57X5SD Arachis hypogaea HOM05D006559 ORTHO05D008867 1.5e-204 716.8 662 56.2
arahy.Tifrunner.gnm1.ann1.Y9UCUD Arachis hypogaea HOM05D006559 ORTHO05D008867 1.5e-204 716.8 662 56.3
MBI18_g32021_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D008867 2.0e-204 716.5 662 55.9
AUR62016199 Chenopodium quinoa HOM05D006559 ORTHO05D008867 9.7e-204 714.1 742 51.2
Lsat_1_v5_gn_6_116281 Lactuca sativa HOM05D006559 ORTHO05D008867 2.2e-203 713.0 672 55.8
CARHR092280 Cardamine hirsuta HOM05D006559 ORTHO05D008867 4.8e-203 711.8 399 89.0
MD13G1155000 Malus domestica HOM05D006559 ORTHO05D008867 2.4e-202 709.5 670 55.1
Oeu032013.1 Olea europaea HOM05D006559 ORTHO05D008867 4.1e-202 708.8 658 55.0
Phvul.003G113900 Phaseolus vulgaris HOM05D006559 ORTHO05D008867 4.1e-202 708.8 663 55.2
Sed0004607 Sechium edule HOM05D006559 ORTHO05D008867 4.1e-202 708.8 680 54.1
Nn3g21720 Nelumbo nucifera HOM05D006559 ORTHO05D008867 2.0e-201 706.4 680 54.9
MSTRG.3859 Avicennia marina HOM05D006559 ORTHO05D008867 5.0e-200 701.8 665 54.4
PSO210G1317 Papaver somniferum HOM05D006559 ORTHO05D008867 5.0e-200 701.8 669 54.4
Prupe.1G118000 Prunus persica HOM05D006559 ORTHO05D008867 1.5e-199 700.3 673 54.4
ECA246G2012 Erigeron canadensis HOM05D006559 ORTHO05D008867 1.2e-198 697.2 660 53.6
SalBow8G4902 Salvia bowleyana HOM05D006559 ORTHO05D008867 2.1e-198 696.4 667 53.1
TPR.G5276 Trifolium pratense HOM05D006559 ORTHO05D008867 3.1e-194 682.6 712 53.1
Atru.chr4.3010 Acer truncatum HOM05D006559 ORTHO05D008867 1.3e-192 677.2 690 54.5
EL10Ac3g05493 Beta vulgaris HOM05D006559 ORTHO05D008867 3.8e-192 675.6 694 52.3
COL.COLO4_34624 Corchorus olitorius HOM05D006559 ORTHO05D008867 6.8e-189 664.8 677 52.9
Ah.13g071910 Amaranthus hybridus HOM05D006559 ORTHO05D008867 1.1e-183 647.5 677 50.4
FAN07G1421 Fragaria x ananassa HOM05D006559 ORTHO05D008867 1.1e-183 647.5 666 51.8
Lj6A690G72 Lonicera japonica HOM05D006559 ORTHO05D008867 1.9e-183 646.7 512 62.1
ATR0796G144 Amborella trichopoda HOM05D006559 ORTHO05D008867 3.0e-181 639.4 659 50.5
CiPaw.01G113700 Carya illinoinensis HOM05D006559 ORTHO05D008867 8.8e-181 637.9 523 61.0
HanXRQChr08g0236161 Helianthus annuus HOM05D006559 ORTHO05D008867 2.3e-176 623.2 671 51.1
Duzib151G0228 Durio zibethinus HOM05D006559 ORTHO05D008867 1.9e-175 620.2 666 50.3
SHI00146 Sapria himalayana HOM05D006559 ORTHO05D008867 1.9e-175 620.2 672 51.6
Os03g0832500 Oryza sativa ssp. japonica HOM05D006559 ORTHO05D008867 5.6e-175 618.6 650 50.5
Actinidia40373 Actinidia chinensis HOM05D006559 ORTHO05D008867 2.9e-171 606.3 467 64.9
Zm00001eb063450 Zea mays HOM05D006559 ORTHO05D008867 9.2e-170 601.3 651 50.1
Nitab4.5_0000169g0190 Nicotiana tabacum HOM05D006559 ORTHO05D008867 2.8e-166 589.7 524 57.3
SEGI_33199 Sequoiadendron giganteum HOM05D006559 ORTHO05D008867 6.4e-155 552.0 672 45.2
Hma1.2p1_0078F.1_g039960 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 3.2e-146 523.1 512 53.9
ClCG00G004240 Citrullus lanatus HOM05D006559 ORTHO05D008867 9.0e-141 505.0 526 52.9
unitig_32.g11851 Utricularia gibba HOM05D006559 ORTHO05D008867 4.3e-127 459.5 646 40.7
HPP92_015242 Vanilla planifolia HOM05D006559 ORTHO05D008867 9.3e-122 441.8 662 40.3
Mapoly0086s0053 Marchantia polymorpha HOM05D006559 ORTHO05D008867 4.6e-121 439.5 687 37.3
AagrBONN_evm.TU.Sc2ySwM_344.4908 Anthoceros agrestis HOM05D006559 ORTHO05D008867 9.7e-111 405.2 665 37.3
RcHm_v2.0_Chr4g0424931 Rosa chinensis HOM05D006559 ORTHO05D008867 5.3e-93 346.3 399 48.4
TAR365G1053 Trochodendron aralioides HOM05D006559 ORTHO05D008867 1.2e-89 335.1 261 65.1
SMO116G0303 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 2.1e-81 307.8 465 38.9
SMO239G0200 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 1.2e-73 282.0 536 34.0
TPR.G16835 Trifolium pratense HOM05D006559 ORTHO05D008867 1.9e-58 231.5 386 39.4
AUR62035935 Chenopodium quinoa HOM05D006559 ORTHO05D008867 1.8e-40 171.8 246 39.8
SMO195G0016 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 8.3e-38 162.9 396 30.1
AUR62044438 Chenopodium quinoa HOM05D006559 ORTHO05D008867 4.1e-37 160.6 184 45.1
Hma1.2p1_0078F.1_g039980 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 4.6e-36 157.1 147 52.4
Actinidia27128 Actinidia chinensis HOM05D006559 ORTHO05D008867 4.3e-34 150.6 118 66.1
BcaB04g20870 Brassica carinata HOM05D006559 ORTHO05D019951 1.4e-29 135.6 92 73.9
AUR62038912 Chenopodium quinoa HOM05D006559 ORTHO05D008867 5.4e-29 133.7 238 33.6
BcaC01g05501 Brassica carinata HOM05D006559 ORTHO05D019951 1.0e-27 129.4 94 71.3
Cc03_g00880 Coffea canephora HOM05D006559 ORTHO05D008867 3.0e-27 127.9 87 69.0
MBI14_g17950_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D241410 3.2e-21 107.8 187 40.1
RcHm_v2.0_Chr4g0425061 Rosa chinensis HOM05D006559 ORTHO05D008867 5.4e-21 107.1 113 53.1
Lj6A690T73 Lonicera japonica HOM05D006559 ORTHO05D008867 2.1e-20 105.1 97 51.5
RcHm_v2.0_Chr3g0458131 Rosa chinensis HOM05D006559 ORTHO05D050582 1.3e-14 85.9 74 60.8
RcHm_v2.0_Chr4g0425081 Rosa chinensis HOM05D006559 ORTHO05D008867 1.3e-14 85.9 115 40.0
Potri.008G105850 Populus trichocarpa HOM05D006559 ORTHO05D050582 1.6e-12 79.0 70 52.9
RcHm_v2.0_Chr4g0425071 Rosa chinensis HOM05D006559 ORTHO05D343184 3.4e-07 61.2 64 46.9
BcaC01g01575 Brassica carinata HOM05D006559 ORTHO05D019951 2.2e-06 58.5 45 68.9


User provided reference genes

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