Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G16990 Arabidopsis thaliana HOM05D006322 ORTHO05D007716 4.9e-128 461.1 222 100.0
AL3G29970 Arabidopsis lyrata HOM05D006322 ORTHO05D007716 1.3e-120 436.4 222 94.6
Carub.0003s1674 Capsella rubella HOM05D006322 ORTHO05D007716 1.9e-116 422.5 220 92.3
Thhalv10021446m.g Eutrema salsugineum HOM05D006322 ORTHO05D007716 6.2e-115 417.5 220 90.9
CARHR092240 Cardamine hirsuta HOM05D006322 ORTHO05D007716 6.9e-114 414.1 221 89.6
Sp3g15210 Schrenkiella parvula HOM05D006322 ORTHO05D007716 2.7e-110 402.1 217 88.0
BraA03t13148Z Brassica rapa HOM05D006322 ORTHO05D007716 8.7e-109 397.1 218 86.2
BcaB04g18916 Brassica carinata HOM05D006322 ORTHO05D007716 1.1e-108 396.7 221 86.4
BcaC01g03797 Brassica carinata HOM05D006322 ORTHO05D007716 1.1e-108 396.7 221 86.4
BolC3t17131H Brassica oleracea HOM05D006322 ORTHO05D007716 1.1e-108 396.7 221 86.4
A03p40000 Brassica napus HOM05D006322 ORTHO05D007716 1.3e-107 393.3 218 85.8
C03p48530 Brassica napus HOM05D006322 ORTHO05D007716 2.8e-107 392.1 221 85.1
Aa31LG8G4030 Aethionema arabicum HOM05D006322 ORTHO05D007716 6.9e-106 387.5 221 83.7
BcaB04g18918 Brassica carinata HOM05D006322 ORTHO05D007716 5.3e-98 361.3 221 81.0
Haze_01283 Corylus avellana HOM05D006322 ORTHO05D007716 1.5e-84 316.6 219 66.7
Cfa015332 Carpinus fangiana HOM05D006322 ORTHO05D007716 3.3e-84 315.5 219 66.2
Manes.03G203000 Manihot esculenta HOM05D006322 ORTHO05D007716 2.2e-83 312.8 219 66.2
EL10Ac3g05469 Beta vulgaris HOM05D006322 ORTHO05D007716 3.7e-83 312.0 218 66.1
Cpa.g.sc9.74 Carica papaya HOM05D006322 ORTHO05D007716 6.3e-83 311.2 218 64.7
COL.COLO4_34636 Corchorus olitorius HOM05D006322 ORTHO05D007716 2.4e-82 309.3 221 64.3
QL06p011774 Quercus lobata HOM05D006322 ORTHO05D007716 3.1e-82 308.9 219 65.8
TAR636G2967 Trochodendron aralioides HOM05D006322 ORTHO05D007716 5.3e-82 308.1 215 63.7
Solyc11g007570.2 Solanum lycopersicum HOM05D006322 ORTHO05D007716 9.1e-82 307.4 214 64.5
Peaxi162Scf00244g00413 Petunia axillaris HOM05D006322 ORTHO05D007716 1.2e-81 307.0 217 64.5
Sopen11g003410 Solanum pennellii HOM05D006322 ORTHO05D007716 2.0e-81 306.2 214 64.0
Thecc.04G298700 Theobroma cacao HOM05D006322 ORTHO05D007716 5.9e-81 304.7 221 64.7
Aqoxy2G02768 Aquilegia oxysepala HOM05D006322 ORTHO05D007716 1.3e-80 303.5 217 63.1
PGSC0003DMG400027315 Solanum tuberosum HOM05D006322 ORTHO05D007716 1.7e-80 303.1 214 63.1
Nitab4.5_0001807g0060 Nicotiana tabacum HOM05D006322 ORTHO05D007716 2.2e-80 302.8 214 63.1
Duzib052G0456 Durio zibethinus HOM05D006322 ORTHO05D007716 2.9e-80 302.4 219 63.5
Potri.008G106600 Populus trichocarpa HOM05D006322 ORTHO05D007716 3.8e-80 302.0 220 61.4
Atru.chr4.3025 Acer truncatum HOM05D006322 ORTHO05D007716 6.5e-80 301.2 221 64.3
Hma1.2p1_0078F.1_g040000 Hydrangea macrophylla HOM05D006322 ORTHO05D007716 2.5e-79 299.3 212 65.6
Nitab4.5_0002259g0050 Nicotiana tabacum HOM05D006322 ORTHO05D007716 3.2e-79 298.9 214 61.7
Sc25g0003310 Simmondsia chinensis HOM05D006322 ORTHO05D007716 4.2e-79 298.5 215 63.3
Lju470A16T21 Lonicera japonica HOM05D006322 ORTHO05D007716 5.5e-79 298.1 213 63.4
CiPaw.01G139400 Carya illinoinensis HOM05D006322 ORTHO05D007716 7.2e-79 297.7 214 64.5
Medtr4g121940 Medicago truncatula HOM05D006322 ORTHO05D007716 1.2e-78 297.0 218 62.4
Phvul.003G113400 Phaseolus vulgaris HOM05D006322 ORTHO05D007716 1.2e-78 297.0 218 61.9
Eucgr.A00353 Eucalyptus grandis HOM05D006322 ORTHO05D007716 1.6e-78 296.6 218 61.0
SalBow5G5236 Salvia bowleyana HOM05D006322 ORTHO05D007716 2.1e-78 296.2 217 61.8
ECA233G0552 Erigeron canadensis HOM05D006322 ORTHO05D007716 2.7e-78 295.8 215 61.4
Migut.N00046 Erythranthe guttata HOM05D006322 ORTHO05D007716 3.6e-78 295.4 218 61.5
Lj4g0019910 Lotus japonicus HOM05D006322 ORTHO05D007716 4.7e-78 295.0 218 62.4
Sabra08G0080400 Salix brachista HOM05D006322 ORTHO05D007716 4.7e-78 295.0 220 59.5
Prupe.1G119400 Prunus persica HOM05D006322 ORTHO05D007716 6.1e-78 294.7 226 63.3
MD16G1155500 Malus domestica HOM05D006322 ORTHO05D007716 1.0e-77 293.9 222 64.0
Oeu019970.1 Olea europaea HOM05D006322 ORTHO05D007716 1.8e-77 293.1 217 59.9
VMungo1215G3118 Vigna mungo HOM05D006322 ORTHO05D007716 1.8e-77 293.1 218 61.0
Duzib151G0960 Durio zibethinus HOM05D006322 ORTHO05D007716 5.2e-77 291.6 220 63.2
Glyma.17G032700 Glycine max HOM05D006322 ORTHO05D007716 5.2e-77 291.6 218 61.0
HanXRQChr13g0395571 Helianthus annuus HOM05D006322 ORTHO05D007716 1.1e-76 290.4 217 60.8
Actinidia40367 Actinidia chinensis HOM05D006322 ORTHO05D007716 1.5e-76 290.0 215 61.4
Lsat_1_v5_gn_6_16821 Lactuca sativa HOM05D006322 ORTHO05D007716 1.5e-76 290.0 214 61.2
Cc03_g00960 Coffea canephora HOM05D006322 ORTHO05D007716 2.0e-76 289.7 217 60.8
GSVIVG01035010001 Vitis vinifera HOM05D006322 ORTHO05D007716 2.0e-76 289.7 203 65.0
CSS0012053 Camellia sinensis var. sinensis HOM05D006322 ORTHO05D007716 3.3e-76 288.9 215 60.9
CANSAT78G1173 Cannabis sativa HOM05D006322 ORTHO05D007716 3.3e-76 288.9 223 60.1
Ciclev10005751m.g Citrus clementina HOM05D006322 ORTHO05D007716 3.3e-76 288.9 227 63.0
Gohir.D09G235800 Gossypium hirsutum HOM05D006322 ORTHO05D007716 5.7e-76 288.1 213 61.5
MBI19_g07237_MAGBIO Magnolia biondii HOM05D006322 ORTHO05D007716 5.7e-76 288.1 215 59.5
THA.LOC104802603 Tarenaya hassleriana HOM05D006322 ORTHO05D007716 5.7e-76 288.1 175 76.0
Gohir.A09G235000 Gossypium hirsutum HOM05D006322 ORTHO05D007716 9.7e-76 287.3 215 60.5
Gorai.006G258900 Gossypium raimondii HOM05D006322 ORTHO05D007716 1.7e-75 286.6 213 61.0
Psat4g024200 Pisum sativum HOM05D006322 ORTHO05D007716 1.7e-75 286.6 220 59.5
MSTRG.24817 Avicennia marina HOM05D006322 ORTHO05D007716 2.8e-75 285.8 219 59.4
Ca_21447_v3 Cicer arietinum L. HOM05D006322 ORTHO05D007716 2.8e-75 285.8 219 61.2
Hund11963 Selenicereus undatus HOM05D006322 ORTHO05D007716 3.7e-75 285.4 213 59.6
vmacro08057 Vaccinium macrocarpon HOM05D006322 ORTHO05D007716 3.7e-75 285.4 216 59.3
PSO357G0527 Papaver somniferum HOM05D006322 ORTHO05D007716 6.3e-75 284.6 216 60.2
Nn3g21692 Nelumbo nucifera HOM05D006322 ORTHO05D007716 1.4e-74 283.5 215 60.0
RcHm_v2.0_Chr4g0424801 Rosa chinensis HOM05D006322 ORTHO05D007716 2.4e-74 282.7 217 59.0
TWI09G0431 Tripterygium wilfordii HOM05D006322 ORTHO05D007716 2.4e-74 282.7 215 61.4
HPP92_001241 Vanilla planifolia HOM05D006322 ORTHO05D007716 2.4e-74 282.7 216 60.6
Dinv44297 Davidia involucrata HOM05D006322 ORTHO05D007716 3.1e-74 282.3 183 69.9
PSO170G6693 Papaver somniferum HOM05D006322 ORTHO05D007716 3.1e-74 282.3 215 59.5
FAN07G2163 Fragaria x ananassa HOM05D006322 ORTHO05D007716 7.0e-74 281.2 218 58.3
SGA_v2.0_scaffold119G32659 Striga asiatica HOM05D006322 ORTHO05D007716 7.0e-74 281.2 211 59.7
arahy.Tifrunner.gnm1.ann1.WPA2XH Arachis hypogaea HOM05D006322 ORTHO05D007716 1.2e-73 280.4 216 58.8
Rhsim04G0234900 Rhododendron simsii HOM05D006322 ORTHO05D007716 2.0e-73 279.6 215 59.5
ATR0796G257 Amborella trichopoda HOM05D006322 ORTHO05D007716 5.9e-73 278.1 214 57.0
Zm00001eb396140 Zea mays HOM05D006322 ORTHO05D007716 1.0e-72 277.3 218 56.0
arahy.Tifrunner.gnm1.ann1.57P81C Arachis hypogaea HOM05D006322 ORTHO05D007716 1.3e-72 276.9 216 57.9
Psat4g024280 Pisum sativum HOM05D006322 ORTHO05D007716 6.5e-72 274.6 217 57.1
DCAR_027007 Daucus carota HOM05D006322 ORTHO05D007716 8.5e-72 274.2 274 47.8
PGR031G3552 Punica granatum HOM05D006322 ORTHO05D007716 1.1e-71 273.9 212 59.0
Lalb_Chr13g0298441 Lupinus albus HOM05D006322 ORTHO05D007716 4.2e-71 271.9 210 59.0
Os03g0306900 Oryza sativa ssp. japonica HOM05D006322 ORTHO05D007716 4.2e-71 271.9 208 56.7
BcaB04g18915 Brassica carinata HOM05D001503 ORTHO05D003820 4.7e-70 268.5 189 73.5
MELO3C021273.2 Cucumis melo HOM05D006322 ORTHO05D007716 4.7e-70 268.5 211 58.8
ClCG06G004620 Citrullus lanatus HOM05D006322 ORTHO05D007716 1.8e-69 266.5 211 58.3
Sed0017771 Sechium edule HOM05D006322 ORTHO05D007716 5.2e-69 265.0 209 58.9
CsaV3_6G022370 Cucumis sativus L. HOM05D006322 ORTHO05D007716 1.7e-67 260.0 209 57.4
FAN12G2263 Fragaria x ananassa HOM05D006322 ORTHO05D007716 5.4e-66 255.0 211 55.9
CAN.G135.71 Capsicum annuum HOM05D006322 ORTHO05D007716 1.9e-63 246.5 175 64.6
AUR62041396 Chenopodium quinoa HOM05D006322 ORTHO05D007716 9.5e-63 244.2 175 62.9
Ah.13g071980 Amaranthus hybridus HOM05D006322 ORTHO05D007716 2.7e-62 242.7 210 55.2
DCAR_030477 Daucus carota HOM05D006322 ORTHO05D007716 8.0e-62 241.1 218 51.8
SEGI_24166 Sequoiadendron giganteum HOM05D006322 ORTHO05D007716 1.8e-61 240.0 218 50.0
SHI00180 Sapria himalayana HOM05D006322 ORTHO05D007716 1.2e-60 237.3 249 47.0
AUR62016124 Chenopodium quinoa HOM05D006322 ORTHO05D007716 3.4e-60 235.7 174 62.1
FvH4_4g19550 Fragaria vesca HOM05D006322 ORTHO05D007716 5.4e-58 228.4 181 59.1
Peaxi162Scf00244g00510 Petunia axillaris HOM05D006322 ORTHO05D007716 1.3e-56 223.8 215 48.8
Solyc11g007560.2 Solanum lycopersicum HOM05D006322 ORTHO05D007716 8.0e-54 214.5 216 47.7
AagrBONN_evm.TU.Sc2ySwM_117.1930 Anthoceros agrestis HOM05D006322 ORTHO05D007716 5.2e-53 211.8 213 47.9
SMO116G0484 Selaginella moellendorffii HOM05D006322 ORTHO05D007716 3.4e-52 209.1 213 45.1
CAN.G135.72 Capsicum annuum HOM05D006322 ORTHO05D007716 7.5e-52 208.0 216 45.4
Mapoly0003s0261 Marchantia polymorpha HOM05D006322 ORTHO05D007716 3.7e-51 205.7 215 41.4
TAR362G0340 Trochodendron aralioides HOM05D006322 ORTHO05D007716 1.1e-50 204.1 215 47.9
Actinidia27045 Actinidia chinensis HOM05D006322 ORTHO05D007716 2.7e-49 199.5 153 61.4
Nitab4.5_0001807g0070 Nicotiana tabacum HOM05D006322 ORTHO05D007716 5.9e-49 198.4 208 46.6
EL10Ac7g16563 Beta vulgaris HOM05D006322 ORTHO05D007716 7.8e-49 198.0 157 57.3
Pp3c10_15580 Physcomitrium patens HOM05D006322 ORTHO05D007716 1.7e-48 196.8 217 42.4
TPR.G20694 Trifolium pratense HOM05D006322 ORTHO05D007716 2.2e-43 179.9 160 51.2
Lalb_Chr20g0120881 Lupinus albus HOM05D006322 ORTHO05D007716 3.5e-41 172.6 136 57.4
PGSC0003DMG400040588 Solanum tuberosum HOM05D006322 ORTHO05D007716 8.9e-37 157.9 164 47.6
Actinidia15599 Actinidia chinensis HOM05D006322 ORTHO05D007716 5.8e-36 155.2 113 62.8
CBR_g45493 Chara braunii HOM05D006322 ORTHO05D007716 8.9e-29 131.3 220 30.9
Atru.chr4.3023 Acer truncatum HOM05D006322 ORTHO05D007716 1.2e-28 131.0 87 66.7
Glyma.07G240701 Glycine max HOM05D006322 ORTHO05D007716 1.0e-24 117.9 112 51.8
BcaB04g18920 Brassica carinata HOM05D006322 ORTHO05D007716 4.7e-22 109.0 158 44.3
EL10Ac9g22265 Beta vulgaris HOM05D006322 ORTHO05D007716 1.3e-19 100.9 96 49.0
Cre09.g407600 Chlamydomonas reinhardtii HOM05D006322 ORTHO05D007716 1.4e-18 97.4 221 28.5
EL10Ac1g02106 Beta vulgaris HOM05D006322 ORTHO05D007716 9.6e-15 84.7 54 64.8
CANSAT54G0480 Cannabis sativa HOM05D006322 ORTHO05D007716 1.2e-12 77.8 97 42.3
CBR_g56708 Chara braunii HOM05D009436 ORTHO05D000048 1.5e-12 77.4 102 34.3
Atru.chr4.2979 Acer truncatum HOM05D006322 ORTHO05D007716 1.9e-10 70.5 43 67.4
PSO782G2289 Papaver somniferum HOM05D000256 ORTHO05D000119 4.8e-06 55.8 47 51.1


User provided reference genes

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